Wall clock time and date at job start Tue Mar 31 2020 15:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 H 1.08999 * 109.47082 * 55.00195 * 3 2 1 5 5 C 1.50699 * 109.47298 * 175.00125 * 3 2 1 6 6 H 1.07996 * 120.00205 * 119.99783 * 5 3 2 7 7 C 1.37881 * 119.99894 * 299.99894 * 5 3 2 8 8 N 1.31518 * 120.00145 * 179.97438 * 7 5 3 9 9 Si 1.86808 * 119.99953 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47142 * 89.99427 * 9 7 5 11 11 H 1.48495 * 109.46809 * 209.99996 * 9 7 5 12 12 H 1.48497 * 109.46853 * 329.99754 * 9 7 5 13 13 O 1.45203 * 109.47010 * 294.99876 * 3 2 1 14 14 C 1.34659 * 116.99858 * 90.00361 * 13 3 2 15 15 O 1.21416 * 119.99983 * 359.97438 * 14 13 3 16 16 C 1.48216 * 120.00309 * 179.97438 * 14 13 3 17 17 C 1.39856 * 119.19823 * 179.97438 * 16 14 13 18 18 C 1.38554 * 119.56187 * 179.97438 * 17 16 14 19 19 N 1.38689 * 121.00795 * 180.02562 * 18 17 16 20 20 C 1.46902 * 111.00302 * 299.98051 * 19 18 17 21 21 C 1.46898 * 110.99796 * 63.93672 * 19 18 17 22 22 C 1.41506 * 117.98427 * 0.02562 * 18 17 16 23 23 C 1.40183 * 121.25116 * 180.02562 * 22 18 17 24 24 C 1.36237 * 119.66482 * 179.72224 * 23 22 18 25 25 C 1.39352 * 120.85879 * 0.25635 * 24 23 22 26 26 C 1.36044 * 121.05129 * 0.02562 * 25 24 23 27 27 C 1.40787 * 119.75082 * 359.97438 * 26 25 24 28 28 N 1.32075 * 119.18863 * 0.53907 * 16 14 13 29 29 H 1.09004 * 109.47228 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47089 * 299.99907 * 1 2 3 31 31 H 1.08998 * 109.46902 * 59.99935 * 1 2 3 32 32 H 1.09002 * 109.46750 * 239.99767 * 2 1 3 33 33 H 1.08998 * 109.46902 * 120.00065 * 2 1 3 34 34 H 0.97000 * 119.99500 * 180.02562 * 8 7 5 35 35 H 1.07998 * 120.21848 * 359.97438 * 17 16 14 36 36 H 1.08995 * 109.47003 * 63.94987 * 20 19 18 37 37 H 1.09001 * 109.46646 * 183.95502 * 20 19 18 38 38 H 1.09003 * 109.47003 * 303.95198 * 20 19 18 39 39 H 1.08997 * 109.47264 * 56.04556 * 21 19 18 40 40 H 1.08998 * 109.47107 * 176.04555 * 21 19 18 41 41 H 1.09002 * 109.47085 * 296.04125 * 21 19 18 42 42 H 1.08002 * 120.16957 * 0.02562 * 23 22 18 43 43 H 1.08005 * 119.56666 * 180.23557 * 24 23 22 44 44 H 1.08000 * 119.47130 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.12125 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 5.4541 0.8794 1.3358 9 14 3.0963 0.1088 2.5701 10 1 2.8754 -1.3273 2.2633 11 1 3.7936 0.2347 3.8751 12 1 1.7877 0.8072 2.6387 13 8 1.6559 2.0916 -1.2407 14 6 0.4690 2.7275 -1.2560 15 8 -0.2263 2.7391 -0.2608 16 6 0.0114 3.4131 -2.4878 17 6 -1.2245 4.0679 -2.4851 18 6 -1.6594 4.7118 -3.6322 19 7 -2.8794 5.3707 -3.6628 20 6 -3.9849 4.4451 -3.3813 21 6 -2.8896 6.5031 -2.7271 22 6 -0.8212 4.6766 -4.7717 23 6 -1.1934 5.3055 -5.9680 24 6 -0.3588 5.2562 -7.0437 25 6 0.8596 4.5836 -6.9729 26 6 1.2501 3.9574 -5.8300 27 6 0.4146 3.9863 -4.6971 28 7 0.7756 3.3813 -3.5645 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8770 0.4810 2.1125 35 1 -1.8357 4.0716 -1.5947 36 1 -3.8871 4.0605 -2.3661 37 1 -4.9340 4.9720 -3.4805 38 1 -3.9538 3.6162 -4.0885 39 1 -2.0611 7.1726 -2.9579 40 1 -3.8311 7.0441 -2.8217 41 1 -2.7843 6.1327 -1.7073 42 1 -2.1347 5.8306 -6.0351 43 1 -0.6454 5.7445 -7.9635 44 1 1.5041 4.5590 -7.8391 45 1 2.1978 3.4409 -5.7916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810709853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:09 Heat of formation + Delta-G solvation = -8.501985 kcal Electronic energy + Delta-G solvation = -27983.039445 eV Core-core repulsion = 24159.410478 eV Total energy + Delta-G solvation = -3823.628967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.31320 -39.72108 -38.25336 -36.94047 -35.98928 -33.57941 -32.44142 -31.92210 -30.92999 -29.85764 -27.98908 -27.86442 -25.79131 -25.01933 -23.32050 -22.82507 -21.86716 -21.00673 -19.87388 -18.23999 -18.09108 -17.56241 -16.66037 -16.33327 -15.80674 -15.55958 -15.45543 -15.24111 -14.96157 -14.48328 -14.20771 -14.12164 -14.07514 -13.46492 -13.43117 -12.88537 -12.73030 -12.55471 -12.44122 -12.09933 -12.01620 -11.88002 -11.77742 -11.72978 -11.60942 -11.45322 -11.23496 -10.75383 -10.43625 -10.32226 -10.01140 -9.69968 -9.62689 -9.51230 -9.07309 -9.01932 -8.98717 -8.64105 -8.33011 -6.20734 -4.22820 0.02905 0.48265 1.75822 2.28179 3.12716 3.19002 3.24411 3.31241 3.33370 3.34904 3.99411 4.10690 4.27418 4.50569 4.58557 4.68639 4.76792 4.96070 4.97596 5.03132 5.08063 5.12969 5.14684 5.22269 5.25686 5.38985 5.51498 5.52754 5.65428 5.80013 5.85465 5.87012 5.91477 5.97445 6.14851 6.17682 6.29272 6.36001 6.41708 6.55349 6.62157 6.66185 6.71339 6.83980 7.01297 7.30692 7.49248 7.66315 8.20516 8.55824 8.88532 9.35865 10.91310 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.003457 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.176141 B = 8096.680964 C = 9219.654124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.194 3.806 4 H 0.047 0.953 5 C -0.523 4.523 6 H 0.089 0.911 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.261 1.261 13 O -0.311 6.311 14 C 0.509 3.491 15 O -0.507 6.507 16 C 0.147 3.853 17 C -0.158 4.158 18 C 0.143 3.857 19 N -0.507 5.507 20 C 0.024 3.976 21 C 0.024 3.976 22 C -0.070 4.070 23 C -0.083 4.083 24 C -0.115 4.115 25 C -0.104 4.104 26 C -0.082 4.082 27 C 0.128 3.872 28 N -0.412 5.412 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.269 0.731 35 H 0.148 0.852 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.954 9.595 -14.986 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.140 3.860 4 H 0.065 0.935 5 C -0.561 4.561 6 H 0.107 0.893 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.185 1.185 13 O -0.224 6.224 14 C 0.351 3.649 15 O -0.396 6.396 16 C -0.005 4.005 17 C -0.180 4.180 18 C 0.040 3.960 19 N -0.227 5.227 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.073 4.073 23 C -0.102 4.102 24 C -0.133 4.133 25 C -0.124 4.124 26 C -0.101 4.101 27 C 0.004 3.996 28 N -0.124 5.124 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.166 0.834 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.210 9.271 -15.037 24.663 hybrid contribution -1.111 -0.461 1.730 2.107 sum -18.321 8.810 -13.307 24.297 Atomic orbital electron populations 1.21901 0.97079 1.00098 1.01630 1.22369 0.94287 0.99530 1.02374 1.21087 0.96604 0.88173 0.80124 0.93503 1.20789 0.87574 1.39827 1.07889 0.89296 1.24724 0.94938 0.95286 0.97314 1.69839 1.08460 1.44342 1.29786 0.87015 0.81022 0.80178 0.81327 1.19886 1.21665 1.18522 1.86694 1.32619 1.61146 1.41958 1.20703 0.81299 0.76792 0.86088 1.90781 1.55839 1.58825 1.34145 1.20315 0.91456 0.96919 0.91812 1.22475 0.96833 0.98704 1.00032 1.18853 0.91193 0.94261 0.91665 1.59295 1.00648 1.10106 1.52683 1.22543 0.93092 0.96025 1.00628 1.22542 1.03531 0.92580 0.93581 1.18828 0.94485 0.99333 0.94636 1.20965 1.00097 0.98004 0.91121 1.21042 0.94318 0.99088 0.98879 1.20947 0.96622 0.96897 0.97930 1.20947 0.99602 0.98918 0.90631 1.18941 0.92418 0.95509 0.92773 1.68079 1.31642 1.14676 0.97987 0.93813 0.92511 0.93766 0.91031 0.91673 0.92074 0.83388 0.94252 0.90209 0.90866 0.90811 0.90204 0.94245 0.84282 0.85441 0.85066 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.56 37.16 0.32 -2.69 16 2 C -0.15 -3.43 5.14 -26.73 -0.14 -3.57 16 3 C 0.19 4.99 1.84 -27.89 -0.05 4.94 16 4 H 0.05 1.26 6.22 -51.93 -0.32 0.93 16 5 C -0.52 -15.29 9.48 -34.44 -0.33 -15.62 16 6 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 7 C 0.08 2.34 5.45 -17.82 -0.10 2.24 16 8 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 9 Si 0.88 21.74 24.41 -169.99 -4.15 17.59 16 10 H -0.27 -6.48 6.83 56.52 0.39 -6.09 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 13 O -0.31 -7.56 9.60 -40.38 -0.39 -7.95 16 14 C 0.51 10.85 6.40 34.83 0.22 11.08 16 15 O -0.51 -11.07 13.46 -19.20 -0.26 -11.33 16 16 C 0.15 2.65 6.74 -83.06 -0.56 2.09 16 17 C -0.16 -2.31 8.24 -38.86 -0.32 -2.63 16 18 C 0.14 1.78 4.71 -83.40 -0.39 1.39 16 19 N -0.51 -4.86 4.19 -186.43 -0.78 -5.64 16 20 C 0.02 0.19 9.29 60.07 0.56 0.75 16 21 C 0.02 0.20 9.33 60.06 0.56 0.76 16 22 C -0.07 -0.89 5.76 -106.58 -0.61 -1.50 16 23 C -0.08 -0.83 9.55 -39.57 -0.38 -1.20 16 24 C -0.12 -0.97 9.96 -39.89 -0.40 -1.37 16 25 C -0.10 -0.95 9.94 -39.96 -0.40 -1.35 16 26 C -0.08 -1.00 9.98 -39.41 -0.39 -1.40 16 27 C 0.13 1.90 6.61 -84.89 -0.56 1.34 16 28 N -0.41 -7.42 10.04 -7.65 -0.08 -7.50 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.16 7.79 -51.93 -0.40 0.75 16 31 H 0.04 0.87 6.06 -51.93 -0.31 0.56 16 32 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.07 1.54 3.21 -51.93 -0.17 1.38 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.15 2.04 6.73 -52.49 -0.35 1.69 16 36 H 0.04 0.33 7.32 -51.93 -0.38 -0.05 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 39 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.04 0.34 7.53 -51.93 -0.39 -0.05 16 42 H 0.14 1.18 7.59 -52.49 -0.40 0.78 16 43 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 44 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.14 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -32.93 364.92 -8.49 -41.42 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.14 Total: 0.85 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -2.97 Total: -6.75 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: -0.08 Total: -39.33 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.65 Total: -19.27 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.93 -8.49 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810709853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.916 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds