Wall clock time and date at job start Tue Mar 31 2020 15:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 H 1.08999 * 109.47082 * 55.00195 * 3 2 1 5 5 C 1.50699 * 109.47298 * 175.00125 * 3 2 1 6 6 H 1.07996 * 120.00205 * 119.99783 * 5 3 2 7 7 C 1.37881 * 119.99894 * 299.99894 * 5 3 2 8 8 N 1.31518 * 120.00145 * 179.97438 * 7 5 3 9 9 Si 1.86808 * 119.99953 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47142 * 89.99427 * 9 7 5 11 11 H 1.48495 * 109.46809 * 209.99996 * 9 7 5 12 12 H 1.48497 * 109.46853 * 329.99754 * 9 7 5 13 13 O 1.45203 * 109.47010 * 294.99876 * 3 2 1 14 14 C 1.34659 * 116.99858 * 90.00361 * 13 3 2 15 15 O 1.21416 * 119.99983 * 359.97438 * 14 13 3 16 16 C 1.48216 * 120.00309 * 179.97438 * 14 13 3 17 17 C 1.39856 * 119.19823 * 179.97438 * 16 14 13 18 18 C 1.38554 * 119.56187 * 179.97438 * 17 16 14 19 19 N 1.38689 * 121.00795 * 180.02562 * 18 17 16 20 20 C 1.46902 * 111.00302 * 299.98051 * 19 18 17 21 21 C 1.46898 * 110.99796 * 63.93672 * 19 18 17 22 22 C 1.41506 * 117.98427 * 0.02562 * 18 17 16 23 23 C 1.40183 * 121.25116 * 180.02562 * 22 18 17 24 24 C 1.36237 * 119.66482 * 179.72224 * 23 22 18 25 25 C 1.39352 * 120.85879 * 0.25635 * 24 23 22 26 26 C 1.36044 * 121.05129 * 0.02562 * 25 24 23 27 27 C 1.40787 * 119.75082 * 359.97438 * 26 25 24 28 28 N 1.32075 * 119.18863 * 0.53907 * 16 14 13 29 29 H 1.09004 * 109.47228 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47089 * 299.99907 * 1 2 3 31 31 H 1.08998 * 109.46902 * 59.99935 * 1 2 3 32 32 H 1.09002 * 109.46750 * 239.99767 * 2 1 3 33 33 H 1.08998 * 109.46902 * 120.00065 * 2 1 3 34 34 H 0.97000 * 119.99500 * 180.02562 * 8 7 5 35 35 H 1.07998 * 120.21848 * 359.97438 * 17 16 14 36 36 H 1.08995 * 109.47003 * 63.94987 * 20 19 18 37 37 H 1.09001 * 109.46646 * 183.95502 * 20 19 18 38 38 H 1.09003 * 109.47003 * 303.95198 * 20 19 18 39 39 H 1.08997 * 109.47264 * 56.04556 * 21 19 18 40 40 H 1.08998 * 109.47107 * 176.04555 * 21 19 18 41 41 H 1.09002 * 109.47085 * 296.04125 * 21 19 18 42 42 H 1.08002 * 120.16957 * 0.02562 * 23 22 18 43 43 H 1.08005 * 119.56666 * 180.23557 * 24 23 22 44 44 H 1.08000 * 119.47130 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.12125 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 5.4541 0.8794 1.3358 9 14 3.0963 0.1088 2.5701 10 1 2.8754 -1.3273 2.2633 11 1 3.7936 0.2347 3.8751 12 1 1.7877 0.8072 2.6387 13 8 1.6559 2.0916 -1.2407 14 6 0.4690 2.7275 -1.2560 15 8 -0.2263 2.7391 -0.2608 16 6 0.0114 3.4131 -2.4878 17 6 -1.2245 4.0679 -2.4851 18 6 -1.6594 4.7118 -3.6322 19 7 -2.8794 5.3707 -3.6628 20 6 -3.9849 4.4451 -3.3813 21 6 -2.8896 6.5031 -2.7271 22 6 -0.8212 4.6766 -4.7717 23 6 -1.1934 5.3055 -5.9680 24 6 -0.3588 5.2562 -7.0437 25 6 0.8596 4.5836 -6.9729 26 6 1.2501 3.9574 -5.8300 27 6 0.4146 3.9863 -4.6971 28 7 0.7756 3.3813 -3.5645 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8770 0.4810 2.1125 35 1 -1.8357 4.0716 -1.5947 36 1 -3.8871 4.0605 -2.3661 37 1 -4.9340 4.9720 -3.4805 38 1 -3.9538 3.6162 -4.0885 39 1 -2.0611 7.1726 -2.9579 40 1 -3.8311 7.0441 -2.8217 41 1 -2.7843 6.1327 -1.7073 42 1 -2.1347 5.8306 -6.0351 43 1 -0.6454 5.7445 -7.9635 44 1 1.5041 4.5590 -7.8391 45 1 2.1978 3.4409 -5.7916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810709853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:08 Heat of formation + Delta-G solvation = -29.470130 kcal Electronic energy + Delta-G solvation = -27983.948692 eV Core-core repulsion = 24159.410478 eV Total energy + Delta-G solvation = -3824.538214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40316 -41.35387 -39.07001 -38.20092 -37.57082 -35.57467 -33.97999 -33.34398 -31.99331 -30.80508 -29.84310 -28.62177 -26.89412 -26.14135 -24.74442 -24.17485 -23.21678 -22.30534 -21.48471 -19.67670 -19.21401 -18.79745 -18.36386 -18.05605 -17.43750 -16.84850 -16.46793 -16.25649 -16.09240 -15.70038 -15.43594 -15.13113 -15.07425 -14.97070 -14.84841 -14.30129 -14.20870 -13.93469 -13.65521 -13.34005 -13.27044 -13.17652 -13.07290 -12.76813 -12.72448 -12.65700 -12.59711 -12.52581 -12.08167 -11.91439 -11.58570 -11.44603 -11.40554 -11.21128 -10.79567 -10.78215 -9.97916 -9.81750 -9.24541 -8.47261 -6.56843 -1.03563 -0.53278 0.80509 1.03798 1.21154 1.28420 1.38911 1.59658 2.01477 2.17339 2.52078 2.83873 2.92654 2.96544 3.51705 3.59416 3.64378 3.89552 4.02591 4.05418 4.11288 4.12867 4.21460 4.31538 4.32286 4.36110 4.39521 4.49420 4.55514 4.56791 4.71832 4.85957 4.88398 4.92227 4.93327 4.94546 4.96237 5.05745 5.21241 5.24830 5.27831 5.36564 5.47576 5.50774 5.66801 5.82927 5.97124 6.04845 6.44696 6.49730 6.80245 7.07172 8.69072 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.003457 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.176141 B = 8096.680964 C = 9219.654124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 C 0.198 3.802 4 H 0.035 0.965 5 C -0.543 4.543 6 H 0.041 0.959 7 C 0.032 3.968 8 N -0.930 5.930 9 Si 0.940 3.060 10 H -0.248 1.248 11 H -0.280 1.280 12 H -0.253 1.253 13 O -0.333 6.333 14 C 0.507 3.493 15 O -0.518 6.518 16 C 0.119 3.881 17 C -0.167 4.167 18 C 0.161 3.839 19 N -0.501 5.501 20 C 0.021 3.979 21 C 0.022 3.978 22 C -0.077 4.077 23 C -0.084 4.084 24 C -0.097 4.097 25 C -0.081 4.081 26 C -0.113 4.113 27 C 0.105 3.895 28 N -0.451 5.451 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.276 0.724 35 H 0.150 0.850 36 H 0.031 0.969 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.030 0.970 42 H 0.161 0.839 43 H 0.172 0.828 44 H 0.167 0.833 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.325 10.419 -17.019 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C 0.144 3.856 4 H 0.053 0.947 5 C -0.581 4.581 6 H 0.059 0.941 7 C -0.168 4.168 8 N -0.567 5.567 9 Si 0.764 3.236 10 H -0.173 1.173 11 H -0.207 1.207 12 H -0.177 1.177 13 O -0.247 6.247 14 C 0.350 3.650 15 O -0.408 6.408 16 C -0.031 4.031 17 C -0.190 4.190 18 C 0.058 3.942 19 N -0.222 5.222 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.080 4.080 23 C -0.102 4.102 24 C -0.115 4.115 25 C -0.100 4.100 26 C -0.132 4.132 27 C -0.020 4.020 28 N -0.164 5.164 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.167 0.833 36 H 0.050 0.950 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.049 0.951 42 H 0.179 0.821 43 H 0.189 0.811 44 H 0.185 0.815 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.599 10.100 -17.080 28.602 hybrid contribution -0.029 -0.525 2.054 2.120 sum -20.628 9.575 -15.027 27.258 Atomic orbital electron populations 1.21812 0.94426 1.02252 1.01265 1.22268 0.96610 0.97179 1.02247 1.20811 0.94247 0.90006 0.80576 0.94745 1.20937 0.89554 1.40261 1.07329 0.94090 1.25594 0.96201 0.95394 0.99629 1.69967 1.10441 1.45296 1.31041 0.85980 0.79329 0.80367 0.77919 1.17288 1.20658 1.17720 1.86677 1.34769 1.62127 1.41174 1.21335 0.80034 0.76136 0.87471 1.90733 1.55770 1.59302 1.34972 1.19987 0.93173 0.99121 0.90825 1.22410 0.95715 0.99608 1.01235 1.19027 0.91967 0.92632 0.90601 1.59496 0.99489 1.10216 1.52955 1.22648 0.93561 0.96143 1.00124 1.22642 1.04972 0.92045 0.92759 1.19075 0.93701 0.99213 0.96020 1.21259 1.01253 0.97530 0.90177 1.21570 0.92941 0.97140 0.99831 1.21408 0.97063 0.94111 0.97450 1.21093 0.99696 1.01010 0.91368 1.19336 0.94057 0.96203 0.92385 1.67912 1.32881 1.16416 0.99169 0.90296 0.92847 0.94204 0.91169 0.91699 0.91419 0.83251 0.94989 0.87368 0.91125 0.91216 0.87300 0.95090 0.82110 0.81068 0.81525 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 8.56 71.98 0.62 -4.91 16 2 C -0.15 -6.80 5.14 30.59 0.16 -6.64 16 3 C 0.20 10.66 1.84 29.85 0.06 10.71 16 4 H 0.03 1.93 6.22 -2.39 -0.01 1.91 16 5 C -0.54 -33.76 9.48 25.60 0.24 -33.52 16 6 H 0.04 2.84 8.06 -2.91 -0.02 2.82 16 7 C 0.03 1.90 5.45 84.66 0.46 2.36 16 8 N -0.93 -58.60 13.96 21.45 0.30 -58.30 16 9 Si 0.94 45.16 24.41 68.60 1.67 46.84 16 10 H -0.25 -10.93 6.83 99.48 0.68 -10.25 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.25 -11.81 6.53 99.48 0.65 -11.16 16 13 O -0.33 -17.38 9.60 -55.68 -0.53 -17.92 16 14 C 0.51 23.00 6.40 70.48 0.45 23.45 16 15 O -0.52 -23.66 13.46 20.11 0.27 -23.39 16 16 C 0.12 4.59 6.74 42.15 0.28 4.87 16 17 C -0.17 -5.05 8.24 22.74 0.19 -4.86 16 18 C 0.16 3.89 4.71 38.94 0.18 4.07 16 19 N -0.50 -8.50 4.19 -743.75 -3.11 -11.61 16 20 C 0.02 0.29 9.29 127.69 1.19 1.48 16 21 C 0.02 0.31 9.33 127.69 1.19 1.50 16 22 C -0.08 -1.88 5.76 -21.13 -0.12 -2.01 16 23 C -0.08 -1.36 9.55 22.28 0.21 -1.15 16 24 C -0.10 -1.18 9.96 22.07 0.22 -0.96 16 25 C -0.08 -1.20 9.94 22.03 0.22 -0.99 16 26 C -0.11 -2.72 9.98 22.38 0.22 -2.50 16 27 C 0.11 3.19 6.61 40.40 0.27 3.45 16 28 N -0.45 -17.41 10.04 -178.13 -1.79 -19.20 16 29 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.05 2.12 7.79 -2.39 -0.02 2.11 16 31 H 0.04 1.58 6.06 -2.39 -0.01 1.57 16 32 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.07 3.00 3.21 -2.39 -0.01 3.00 16 34 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 35 H 0.15 4.30 6.73 -2.91 -0.02 4.28 16 36 H 0.03 0.50 7.32 -2.39 -0.02 0.48 16 37 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 39 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 40 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.03 0.50 7.53 -2.39 -0.02 0.48 16 42 H 0.16 1.96 7.59 -2.91 -0.02 1.94 16 43 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 44 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 45 H 0.13 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -77.99 364.92 3.77 -74.22 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.92 Total: 14.98 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 6.04 Total: -5.62 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -4.60 Total: -89.11 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.26 Total: -41.31 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.67 Total: 46.84 kcal Total: -77.99 3.77 -74.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810709853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.754 kcal (2) G-P(sol) polarization free energy of solvation -77.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds