Wall clock time and date at job start Tue Mar 31 2020 15:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 N 1.46506 * 109.46901 * 294.99627 * 3 2 1 6 6 C 1.34776 * 119.99799 * 85.00473 * 5 3 2 7 7 O 1.21285 * 120.00122 * 359.97438 * 6 5 3 8 8 C 1.50698 * 119.99878 * 179.97438 * 6 5 3 9 9 H 1.08998 * 109.46950 * 60.00003 * 8 6 5 10 10 C 1.47199 * 109.47164 * 299.99609 * 8 6 5 11 11 N 6.16500 * 91.49527 * 329.11431 * 2 1 3 12 12 C 1.50705 * 109.46941 * 179.97438 * 8 6 5 13 13 O 1.20758 * 120.00010 * 29.99979 * 12 8 6 14 14 C 1.50696 * 119.99719 * 209.99699 * 12 8 6 15 15 C 1.53007 * 109.46770 * 180.02562 * 14 12 8 16 16 C 1.50701 * 109.46916 * 180.02562 * 15 14 12 17 17 H 1.08007 * 120.00385 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99802 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00191 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99735 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46895 * 90.00056 * 20 18 16 22 22 H 1.48503 * 109.47097 * 209.99759 * 20 18 16 23 23 H 1.48500 * 109.47261 * 329.99976 * 20 18 16 24 24 C 1.50700 * 109.46738 * 175.00110 * 3 2 1 25 25 C 1.38238 * 120.00134 * 79.72556 * 24 3 2 26 26 C 1.38236 * 119.99578 * 179.80770 * 25 24 3 27 27 C 1.38229 * 120.00469 * 0.39465 * 26 25 24 28 28 C 1.38237 * 119.99927 * 359.85885 * 27 26 25 29 29 C 1.38236 * 119.99736 * 259.99438 * 24 3 2 30 30 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 32 32 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 35 35 H 0.97001 * 119.99984 * 264.99882 * 5 3 2 36 36 H 1.08994 * 109.47188 * 299.99975 * 14 12 8 37 37 H 1.09000 * 109.47172 * 60.00574 * 14 12 8 38 38 H 1.08994 * 109.47198 * 299.99912 * 15 14 12 39 39 H 1.09000 * 109.46851 * 60.00320 * 15 14 12 40 40 H 0.96999 * 120.00469 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.00048 * 359.97438 * 25 24 3 42 42 H 1.08001 * 119.99244 * 180.23375 * 26 25 24 43 43 H 1.08000 * 120.00493 * 179.83313 * 27 26 25 44 44 H 1.08002 * 119.99829 * 179.97438 * 28 27 26 45 45 H 1.07991 * 120.00164 * 359.97438 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 7 1.6524 2.0974 -1.2519 6 6 0.4351 2.6644 -1.3671 7 8 -0.3396 2.6320 -0.4345 8 6 0.0367 3.3385 -2.6546 9 1 0.0681 2.6144 -3.4687 10 6 0.9704 4.4399 -2.9412 11 7 1.6908 5.2890 -3.1636 12 6 -1.3613 3.8859 -2.5233 13 8 -1.7707 4.2440 -1.4452 14 6 -2.2482 3.9863 -3.7375 15 6 -3.6031 4.5703 -3.3324 16 6 -4.4903 4.6702 -4.5465 17 1 -4.1243 4.3495 -5.5107 18 6 -5.7690 5.1718 -4.4265 19 7 -6.2145 5.5626 -3.2526 20 14 -6.8684 5.2962 -5.9316 21 1 -7.6430 4.0384 -6.0841 22 1 -7.8046 6.4372 -5.7678 23 1 -6.0318 5.5118 -7.1394 24 6 3.5419 1.4442 0.1238 25 6 4.3273 1.1974 -0.9867 26 6 5.7050 1.2029 -0.8738 27 6 6.2972 1.4472 0.3510 28 6 5.5118 1.6889 1.4626 29 6 4.1341 1.6872 1.3490 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2720 2.1231 -1.9979 36 1 -1.7796 4.6355 -4.4770 37 1 -2.3930 2.9940 -4.1647 38 1 -4.0719 3.9215 -2.5927 39 1 -3.4580 5.5627 -2.9054 40 1 -7.1140 5.9159 -3.1682 41 1 3.8645 1.0028 -1.9430 42 1 6.3186 1.0137 -1.7422 43 1 7.3736 1.4488 0.4398 44 1 5.9745 1.8793 2.4197 45 1 3.5205 1.8761 2.2174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813091327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:05 Heat of formation + Delta-G solvation = -26.960293 kcal Electronic energy + Delta-G solvation = -26935.152302 eV Core-core repulsion = 23110.722923 eV Total energy + Delta-G solvation = -3824.429379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.95723 -39.76384 -38.51379 -36.70843 -36.00291 -33.55774 -33.03141 -31.66685 -31.36175 -31.21749 -30.55853 -26.54699 -25.72987 -23.20633 -22.60482 -22.28504 -21.42046 -20.57991 -19.70768 -18.67416 -17.57489 -16.97895 -16.60060 -16.41455 -15.66443 -15.51983 -15.02840 -14.96285 -14.65611 -14.46188 -14.36431 -13.93723 -13.82414 -13.78862 -13.45943 -13.25419 -13.05498 -12.97334 -12.53179 -12.33410 -12.22411 -12.18082 -12.07224 -11.68764 -11.47560 -11.19672 -11.17114 -11.01782 -10.95200 -10.63372 -10.14475 -10.02951 -9.79385 -9.41317 -9.32352 -9.20757 -9.09449 -8.95410 -8.35730 -5.99035 -4.03862 0.89910 0.99575 2.00040 2.11291 2.47563 2.67113 2.88378 3.32198 3.38591 3.39261 3.40931 3.74363 4.14162 4.15492 4.38205 4.45589 4.47641 4.58823 4.71817 4.78084 4.85530 4.89328 5.07700 5.11164 5.23937 5.36245 5.42840 5.54974 5.60158 5.65781 5.67667 5.85040 5.93952 6.02013 6.05497 6.10439 6.11915 6.15637 6.27097 6.35811 6.57413 6.83436 7.10970 7.19350 7.67419 7.76879 7.82489 7.96067 8.00488 8.36613 9.03601 9.60241 11.11840 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.002335 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.208425 B =11990.130702 C =12510.630817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.186 3.814 4 H 0.100 0.900 5 N -0.724 5.724 6 C 0.527 3.473 7 O -0.478 6.478 8 C -0.069 4.069 9 H 0.162 0.838 10 C 0.216 3.784 11 N -0.394 5.394 12 C 0.360 3.640 13 O -0.388 6.388 14 C -0.153 4.153 15 C 0.030 3.970 16 C -0.528 4.528 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.090 4.090 25 C -0.114 4.114 26 C -0.116 4.116 27 C -0.120 4.120 28 C -0.116 4.116 29 C -0.106 4.106 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.399 0.601 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.071 -14.013 5.411 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.082 3.918 4 H 0.118 0.882 5 N -0.379 5.379 6 C 0.309 3.691 7 O -0.348 6.348 8 C -0.095 4.095 9 H 0.179 0.821 10 C -0.103 4.103 11 N -0.071 5.071 12 C 0.228 3.772 13 O -0.254 6.254 14 C -0.190 4.190 15 C -0.007 4.007 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.091 4.091 25 C -0.133 4.133 26 C -0.134 4.134 27 C -0.138 4.138 28 C -0.134 4.134 29 C -0.125 4.125 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.234 0.766 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 25.156 -12.467 6.496 28.817 hybrid contribution -0.414 -0.287 -1.266 1.363 sum 24.741 -12.755 5.230 28.323 Atomic orbital electron populations 1.21846 0.94113 1.01095 1.03533 1.21947 0.97323 0.94657 1.02548 1.19937 0.89778 0.94242 0.87835 0.88166 1.46099 1.16412 1.58583 1.16766 1.19536 0.82230 0.79023 0.88300 1.90891 1.50061 1.55818 1.38079 1.19885 0.95373 0.93816 1.00409 0.82104 1.27661 0.93986 0.94255 0.94373 1.81236 1.09560 1.08736 1.07554 1.24423 0.85105 0.75376 0.92337 1.90497 1.72964 1.32535 1.29420 1.22263 0.98717 1.03495 0.94539 1.18981 0.87975 0.96795 0.96991 1.21176 0.98297 1.42719 0.94415 0.92448 1.25028 0.98116 0.95387 0.95854 1.69983 1.17554 1.42295 1.22894 0.86589 0.80557 0.77666 0.83126 1.20617 1.21244 1.19870 1.19933 0.94604 1.00343 0.94224 1.20937 0.93862 1.00317 0.98137 1.21147 0.94690 0.99786 0.97789 1.21203 0.99980 0.99691 0.92973 1.21173 0.93664 0.99723 0.98868 1.21046 0.95026 0.99373 0.97046 0.93163 0.91819 0.92245 0.91587 0.90946 0.76557 0.89391 0.88958 0.95554 0.95899 0.92880 0.86084 0.85872 0.86023 0.85828 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.51 37.16 0.32 -1.23 16 2 C -0.13 -1.03 5.58 -26.73 -0.15 -1.18 16 3 C 0.19 1.65 2.46 -69.08 -0.17 1.48 16 4 H 0.10 1.07 7.44 -51.93 -0.39 0.68 16 5 N -0.72 -6.59 4.87 -54.93 -0.27 -6.86 16 6 C 0.53 6.57 5.64 -10.99 -0.06 6.51 16 7 O -0.48 -7.89 11.78 -17.83 -0.21 -8.10 16 8 C -0.07 -0.81 2.85 -95.71 -0.27 -1.09 16 9 H 0.16 1.07 8.12 -51.93 -0.42 0.65 16 10 C 0.22 2.82 14.39 -20.77 -0.30 2.52 16 11 N -0.39 -5.90 18.53 42.14 0.78 -5.12 16 12 C 0.36 6.15 6.05 -29.03 -0.18 5.97 16 13 O -0.39 -8.42 14.51 -17.38 -0.25 -8.67 16 14 C -0.15 -2.79 5.56 -27.88 -0.16 -2.95 16 15 C 0.03 0.76 4.26 -27.88 -0.12 0.64 16 16 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 17 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 20 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.09 -0.73 4.95 -104.62 -0.52 -1.24 16 25 C -0.11 -0.81 9.05 -39.58 -0.36 -1.16 16 26 C -0.12 -0.77 10.05 -39.59 -0.40 -1.17 16 27 C -0.12 -0.80 10.05 -39.59 -0.40 -1.20 16 28 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 29 C -0.11 -0.83 9.67 -39.58 -0.38 -1.21 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 32 H 0.06 0.70 5.64 -51.93 -0.29 0.41 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.40 2.71 6.75 -40.82 -0.28 2.44 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.12 0.64 6.93 -52.48 -0.36 0.28 16 42 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.13 0.85 8.04 -52.49 -0.42 0.43 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -35.70 385.45 -8.71 -44.41 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.33 Total: -1.78 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -3.95 Total: -9.77 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 1.25 Total: -38.22 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.46 Total: -16.77 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.70 -8.71 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813091327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.449 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds