Wall clock time and date at job start Tue Mar 31 2020 15:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 N 1.46506 * 109.46901 * 294.99627 * 3 2 1 6 6 C 1.34776 * 119.99799 * 85.00473 * 5 3 2 7 7 O 1.21285 * 120.00122 * 359.97438 * 6 5 3 8 8 C 1.50698 * 119.99878 * 179.97438 * 6 5 3 9 9 H 1.08998 * 109.46950 * 60.00003 * 8 6 5 10 10 C 1.47199 * 109.47164 * 299.99609 * 8 6 5 11 11 N 6.16500 * 91.49527 * 329.11431 * 2 1 3 12 12 C 1.50705 * 109.46941 * 179.97438 * 8 6 5 13 13 O 1.20758 * 120.00010 * 29.99979 * 12 8 6 14 14 C 1.50696 * 119.99719 * 209.99699 * 12 8 6 15 15 C 1.53007 * 109.46770 * 180.02562 * 14 12 8 16 16 C 1.50701 * 109.46916 * 180.02562 * 15 14 12 17 17 H 1.08007 * 120.00385 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99802 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00191 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99735 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46895 * 90.00056 * 20 18 16 22 22 H 1.48503 * 109.47097 * 209.99759 * 20 18 16 23 23 H 1.48500 * 109.47261 * 329.99976 * 20 18 16 24 24 C 1.50700 * 109.46738 * 175.00110 * 3 2 1 25 25 C 1.38238 * 120.00134 * 79.72556 * 24 3 2 26 26 C 1.38236 * 119.99578 * 179.80770 * 25 24 3 27 27 C 1.38229 * 120.00469 * 0.39465 * 26 25 24 28 28 C 1.38237 * 119.99927 * 359.85885 * 27 26 25 29 29 C 1.38236 * 119.99736 * 259.99438 * 24 3 2 30 30 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 32 32 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 35 35 H 0.97001 * 119.99984 * 264.99882 * 5 3 2 36 36 H 1.08994 * 109.47188 * 299.99975 * 14 12 8 37 37 H 1.09000 * 109.47172 * 60.00574 * 14 12 8 38 38 H 1.08994 * 109.47198 * 299.99912 * 15 14 12 39 39 H 1.09000 * 109.46851 * 60.00320 * 15 14 12 40 40 H 0.96999 * 120.00469 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.00048 * 359.97438 * 25 24 3 42 42 H 1.08001 * 119.99244 * 180.23375 * 26 25 24 43 43 H 1.08000 * 120.00493 * 179.83313 * 27 26 25 44 44 H 1.08002 * 119.99829 * 179.97438 * 28 27 26 45 45 H 1.07991 * 120.00164 * 359.97438 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 7 1.6524 2.0974 -1.2519 6 6 0.4351 2.6644 -1.3671 7 8 -0.3396 2.6320 -0.4345 8 6 0.0367 3.3385 -2.6546 9 1 0.0681 2.6144 -3.4687 10 6 0.9704 4.4399 -2.9412 11 7 1.6908 5.2890 -3.1636 12 6 -1.3613 3.8859 -2.5233 13 8 -1.7707 4.2440 -1.4452 14 6 -2.2482 3.9863 -3.7375 15 6 -3.6031 4.5703 -3.3324 16 6 -4.4903 4.6702 -4.5465 17 1 -4.1243 4.3495 -5.5107 18 6 -5.7690 5.1718 -4.4265 19 7 -6.2145 5.5626 -3.2526 20 14 -6.8684 5.2962 -5.9316 21 1 -7.6430 4.0384 -6.0841 22 1 -7.8046 6.4372 -5.7678 23 1 -6.0318 5.5118 -7.1394 24 6 3.5419 1.4442 0.1238 25 6 4.3273 1.1974 -0.9867 26 6 5.7050 1.2029 -0.8738 27 6 6.2972 1.4472 0.3510 28 6 5.5118 1.6889 1.4626 29 6 4.1341 1.6872 1.3490 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2720 2.1231 -1.9979 36 1 -1.7796 4.6355 -4.4770 37 1 -2.3930 2.9940 -4.1647 38 1 -4.0719 3.9215 -2.5927 39 1 -3.4580 5.5627 -2.9054 40 1 -7.1140 5.9159 -3.1682 41 1 3.8645 1.0028 -1.9430 42 1 6.3186 1.0137 -1.7422 43 1 7.3736 1.4488 0.4398 44 1 5.9745 1.8793 2.4197 45 1 3.5205 1.8761 2.2174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813091327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:03 Heat of formation + Delta-G solvation = -48.011232 kcal Electronic energy + Delta-G solvation = -26936.065139 eV Core-core repulsion = 23110.722923 eV Total energy + Delta-G solvation = -3825.342216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.97449 -40.61653 -39.59351 -37.84668 -36.83373 -35.56486 -34.02127 -33.14566 -32.15350 -31.89422 -31.65227 -27.91200 -27.00504 -24.18309 -23.67314 -23.16502 -22.40555 -21.40797 -21.06694 -19.72501 -18.67911 -18.34051 -17.73957 -17.25027 -16.95186 -16.43423 -16.15718 -16.13944 -15.87210 -15.72957 -15.39427 -15.14782 -14.58596 -14.49524 -14.32597 -14.23062 -14.16094 -14.04658 -13.95629 -13.77843 -13.40006 -13.21272 -13.09621 -12.80574 -12.79476 -12.47853 -12.45546 -11.98564 -11.86791 -11.82821 -11.73242 -11.64807 -11.29292 -11.18578 -10.54069 -10.48412 -10.20259 -9.83133 -9.66476 -8.15722 -6.28993 0.35917 0.48738 0.73392 1.10277 1.39965 1.44614 1.46478 1.56938 1.57192 1.97165 2.43983 2.67789 2.86203 2.95325 3.18006 3.45216 3.53858 3.92780 4.01505 4.07934 4.17763 4.22356 4.23435 4.28655 4.45337 4.57294 4.60802 4.64453 4.66075 4.75891 4.93414 5.02300 5.07305 5.13921 5.15974 5.17436 5.33489 5.49616 5.53387 5.55181 5.62662 5.65855 5.66678 5.87658 6.08216 6.12923 6.19104 6.32113 6.53445 6.91567 7.05496 7.41411 8.96718 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.002335 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.208425 B =11990.130702 C =12510.630817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.189 3.811 4 H 0.075 0.925 5 N -0.704 5.704 6 C 0.527 3.473 7 O -0.525 6.525 8 C -0.051 4.051 9 H 0.226 0.774 10 C 0.236 3.764 11 N -0.423 5.423 12 C 0.366 3.634 13 O -0.445 6.445 14 C -0.147 4.147 15 C 0.031 3.969 16 C -0.538 4.538 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.254 1.254 24 C -0.101 4.101 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.126 4.126 28 C -0.126 4.126 29 C -0.124 4.124 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.414 0.586 36 H 0.113 0.887 37 H 0.131 0.869 38 H -0.013 1.013 39 H -0.021 1.021 40 H 0.261 0.739 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.442 -15.828 2.393 31.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.085 3.915 4 H 0.093 0.907 5 N -0.359 5.359 6 C 0.309 3.691 7 O -0.399 6.399 8 C -0.076 4.076 9 H 0.242 0.758 10 C -0.083 4.083 11 N -0.100 5.100 12 C 0.237 3.763 13 O -0.315 6.315 14 C -0.183 4.183 15 C -0.006 4.006 16 C -0.576 4.576 17 H 0.099 0.901 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.196 1.196 22 H -0.217 1.217 23 H -0.178 1.178 24 C -0.102 4.102 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.144 4.144 28 C -0.144 4.144 29 C -0.142 4.142 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.252 0.748 36 H 0.131 0.869 37 H 0.148 0.852 38 H 0.005 0.995 39 H -0.003 1.003 40 H 0.070 0.930 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 27.599 -14.306 3.432 31.275 hybrid contribution -1.100 0.277 -0.257 1.163 sum 26.498 -14.029 3.175 30.151 Atomic orbital electron populations 1.21799 0.95890 1.01050 1.01645 1.21882 0.95466 0.94280 1.03902 1.19871 0.90591 0.94307 0.86736 0.90717 1.45948 1.15367 1.57187 1.17372 1.19619 0.82692 0.78914 0.87863 1.90903 1.51647 1.57787 1.39546 1.19771 0.91117 0.94314 1.02416 0.75758 1.27653 0.93486 0.93784 0.93361 1.81271 1.10604 1.09229 1.08874 1.24623 0.87170 0.73762 0.90795 1.90507 1.74740 1.34996 1.31229 1.22150 0.95072 1.05454 0.95661 1.18803 0.92094 0.94148 0.95598 1.21739 0.98582 1.41661 0.95650 0.90148 1.26130 1.00273 0.95092 0.99156 1.70170 1.18058 1.43875 1.25818 0.85368 0.78286 0.77623 0.79260 1.19634 1.21674 1.17812 1.19862 0.93768 1.01645 0.94893 1.21181 0.94176 0.99844 0.98475 1.21468 0.94822 0.99162 0.98540 1.21529 1.01076 0.98924 0.92881 1.21410 0.93399 0.99630 0.99918 1.21206 0.95721 1.00004 0.97279 0.92153 0.94411 0.93519 0.89602 0.90113 0.74756 0.86942 0.85164 0.99498 1.00288 0.93010 0.84109 0.83803 0.84163 0.84478 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.51 71.98 0.61 -2.42 16 2 C -0.12 -1.75 5.58 30.59 0.17 -1.58 16 3 C 0.19 3.23 2.46 44.24 0.11 3.34 16 4 H 0.07 1.69 7.44 -2.39 -0.02 1.67 16 5 N -0.70 -11.55 4.87 -446.09 -2.17 -13.72 16 6 C 0.53 12.60 5.64 87.66 0.49 13.10 16 7 O -0.52 -17.92 11.78 19.31 0.23 -17.69 16 8 C -0.05 -1.08 2.85 -14.09 -0.04 -1.12 16 9 H 0.23 1.75 8.12 -2.39 -0.02 1.73 16 10 C 0.24 5.60 14.39 89.45 1.29 6.88 16 11 N -0.42 -11.87 18.53 20.00 0.37 -11.50 16 12 C 0.37 12.29 6.05 29.10 0.18 12.47 16 13 O -0.45 -20.23 14.51 20.91 0.30 -19.92 16 14 C -0.15 -5.13 5.56 29.85 0.17 -4.96 16 15 C 0.03 1.63 4.26 29.85 0.13 1.75 16 16 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 17 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 18 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 19 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 20 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 24 C -0.10 -1.49 4.95 -19.86 -0.10 -1.59 16 25 C -0.12 -1.36 9.05 22.27 0.20 -1.15 16 26 C -0.12 -1.28 10.05 22.27 0.22 -1.06 16 27 C -0.13 -1.39 10.05 22.27 0.22 -1.17 16 28 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 29 C -0.12 -1.87 9.67 22.27 0.22 -1.65 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 0.96 7.85 -2.39 -0.02 0.94 16 32 H 0.05 1.08 5.64 -2.39 -0.01 1.07 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.41 4.28 6.75 -92.71 -0.63 3.65 16 36 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.13 3.60 8.14 -2.39 -0.02 3.58 16 38 H -0.01 -0.80 8.10 -2.39 -0.02 -0.82 16 39 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 40 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.14 0.94 6.93 -2.91 -0.02 0.92 16 42 H 0.14 0.87 8.06 -2.91 -0.02 0.84 16 43 H 0.14 0.95 8.06 -2.91 -0.02 0.93 16 44 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 45 H 0.12 1.77 8.04 -2.92 -0.02 1.74 16 Total: -1.00 -84.05 385.45 6.21 -77.84 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.38 Total: 8.03 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.79 Total: -9.88 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.52 Total: -84.05 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: 0.53 Total: -37.62 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -84.05 6.21 -77.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813091327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.831 kcal (2) G-P(sol) polarization free energy of solvation -84.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds