Wall clock time and date at job start Tue Mar 31 2020 15:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46916 * 2 1 4 4 H 1.08998 * 109.47634 * 54.99946 * 3 2 1 5 5 N 1.46500 * 109.46811 * 294.99772 * 3 2 1 6 6 C 1.34777 * 119.99709 * 85.00525 * 5 3 2 7 7 O 1.21274 * 120.00284 * 359.97438 * 6 5 3 8 8 C 1.50706 * 119.99726 * 179.97438 * 6 5 3 9 9 H 1.09006 * 109.47039 * 299.99466 * 8 6 5 10 10 C 1.47193 * 109.47010 * 59.99826 * 8 6 5 11 11 N 5.07618 * 73.76645 * 289.22530 * 2 1 3 12 12 C 1.50701 * 109.46840 * 180.02562 * 8 6 5 13 13 O 1.20763 * 119.99937 * 334.99323 * 12 8 6 14 14 C 1.50702 * 119.99878 * 155.27688 * 12 8 6 15 15 C 1.53003 * 109.46878 * 179.72241 * 14 12 8 16 16 C 1.50702 * 109.46878 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99766 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00159 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99543 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 59.99901 * 20 18 16 22 22 H 1.48497 * 109.47169 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47241 * 299.99984 * 20 18 16 24 24 C 1.50700 * 109.46855 * 175.00105 * 3 2 1 25 25 C 1.38243 * 119.99840 * 79.72385 * 24 3 2 26 26 C 1.38238 * 119.99659 * 179.80958 * 25 24 3 27 27 C 1.38238 * 119.99889 * 0.39891 * 26 25 24 28 28 C 1.38232 * 120.00093 * 359.85215 * 27 26 25 29 29 C 1.38234 * 119.99778 * 259.99635 * 24 3 2 30 30 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46712 * 300.00083 * 1 2 3 32 32 H 1.08995 * 109.46795 * 59.99876 * 1 2 3 33 33 H 1.08995 * 109.47029 * 240.00035 * 2 1 3 34 34 H 1.08999 * 109.46901 * 119.99618 * 2 1 3 35 35 H 0.96996 * 120.00371 * 264.99746 * 5 3 2 36 36 H 1.09004 * 109.46965 * 299.72098 * 14 12 8 37 37 H 1.08994 * 109.46990 * 59.71952 * 14 12 8 38 38 H 1.08998 * 109.46943 * 299.99345 * 15 14 12 39 39 H 1.08994 * 109.47116 * 59.99734 * 15 14 12 40 40 H 0.97004 * 119.99849 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.00111 * 359.97438 * 25 24 3 42 42 H 1.08001 * 119.99906 * 180.23176 * 26 25 24 43 43 H 1.07999 * 119.99828 * 179.83878 * 27 26 25 44 44 H 1.08003 * 120.00307 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.00297 * 359.97438 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9817 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4351 2.6643 -1.3670 7 8 -0.3395 2.6319 -0.4345 8 6 0.0366 3.3385 -2.6546 9 1 0.7280 4.1541 -2.8668 10 6 0.0790 2.3607 -3.7539 11 7 0.1110 1.6049 -4.6020 12 6 -1.3608 3.8869 -2.5228 13 8 -2.1298 3.3965 -1.7312 14 6 -1.8008 5.0432 -3.3834 15 6 -3.2534 5.3971 -3.0583 16 6 -3.6931 6.5538 -3.9184 17 1 -3.0052 6.9928 -4.6258 18 6 -4.9736 7.0516 -3.8022 19 7 -5.8114 6.5166 -2.9411 20 14 -5.5185 8.4858 -4.8679 21 1 -5.4089 8.1081 -6.2999 22 1 -6.9287 8.8284 -4.5533 23 1 -4.6511 9.6605 -4.5980 24 6 3.5419 1.4443 0.1238 25 6 4.3273 1.1975 -0.9868 26 6 5.7051 1.2030 -0.8740 27 6 6.2973 1.4472 0.3510 28 6 5.5118 1.6890 1.4625 29 6 4.1341 1.6873 1.3490 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.2719 2.1232 -1.9978 36 1 -1.1639 5.9056 -3.1865 37 1 -1.7210 4.7650 -4.4342 38 1 -3.8902 4.5347 -3.2552 39 1 -3.3331 5.6753 -2.0074 40 1 -6.7122 6.8670 -2.8591 41 1 3.8645 1.0029 -1.9429 42 1 6.3187 1.0138 -1.7423 43 1 7.3736 1.4490 0.4397 44 1 5.9745 1.8794 2.4197 45 1 3.5205 1.8762 2.2174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813091328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:10 Heat of formation + Delta-G solvation = -47.038681 kcal Electronic energy + Delta-G solvation = -26948.266111 eV Core-core repulsion = 23122.966068 eV Total energy + Delta-G solvation = -3825.300043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97563 -40.60203 -39.57012 -37.81922 -36.83551 -35.56615 -34.03943 -33.14749 -32.18427 -31.87707 -31.63005 -27.92311 -27.01203 -24.18046 -23.65340 -23.21004 -22.38030 -21.41515 -21.07257 -19.71217 -18.67456 -18.27634 -17.85257 -17.21277 -16.75580 -16.43707 -16.42499 -16.07853 -15.87830 -15.69636 -15.38495 -15.06768 -14.63717 -14.54452 -14.29767 -14.24620 -14.15171 -13.99003 -13.96262 -13.77408 -13.43282 -13.21245 -13.07266 -12.83781 -12.76015 -12.55096 -12.49822 -11.99660 -11.89013 -11.86245 -11.74753 -11.65410 -11.31720 -11.20585 -10.53567 -10.42922 -10.21309 -9.80221 -9.64322 -8.16018 -6.29399 0.38744 0.51749 0.74235 1.10496 1.40889 1.44266 1.47744 1.55270 1.56875 1.97080 2.43757 2.67986 2.88482 2.95522 3.17491 3.45310 3.53832 3.93267 4.01894 4.05196 4.16990 4.19067 4.22624 4.30616 4.41084 4.55764 4.59592 4.63773 4.66802 4.75204 4.84647 4.95745 5.03537 5.11253 5.16072 5.16368 5.31847 5.39133 5.52480 5.58233 5.65289 5.66001 5.68846 5.87060 6.10840 6.13067 6.18829 6.32678 6.53680 6.90780 7.06355 7.40901 8.96186 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020370 B = 0.002322 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.207746 B =12057.100875 C =12216.543848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.190 3.810 4 H 0.086 0.914 5 N -0.706 5.706 6 C 0.526 3.474 7 O -0.522 6.522 8 C -0.052 4.052 9 H 0.224 0.776 10 C 0.235 3.765 11 N -0.420 5.420 12 C 0.364 3.636 13 O -0.441 6.441 14 C -0.147 4.147 15 C 0.032 3.968 16 C -0.540 4.540 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.291 1.291 23 H -0.260 1.260 24 C -0.098 4.098 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.118 4.118 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.413 0.587 36 H 0.129 0.871 37 H 0.110 0.890 38 H -0.021 1.021 39 H -0.012 1.012 40 H 0.262 0.738 41 H 0.131 0.869 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.855 -10.196 5.102 31.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C 0.086 3.914 4 H 0.104 0.896 5 N -0.360 5.360 6 C 0.308 3.692 7 O -0.396 6.396 8 C -0.077 4.077 9 H 0.240 0.760 10 C -0.083 4.083 11 N -0.097 5.097 12 C 0.235 3.765 13 O -0.310 6.310 14 C -0.184 4.184 15 C -0.006 4.006 16 C -0.578 4.578 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.217 1.217 23 H -0.184 1.184 24 C -0.098 4.098 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.142 4.142 28 C -0.141 4.141 29 C -0.137 4.137 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.252 0.748 36 H 0.147 0.853 37 H 0.128 0.872 38 H -0.003 1.003 39 H 0.006 0.994 40 H 0.070 0.930 41 H 0.149 0.851 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 28.739 -11.630 5.021 31.407 hybrid contribution -0.867 0.810 -0.222 1.207 sum 27.872 -10.820 4.799 30.282 Atomic orbital electron populations 1.21769 0.96338 1.00620 1.01426 1.21908 0.95039 0.95412 1.03493 1.19856 0.90901 0.93560 0.87047 0.89569 1.45961 1.15638 1.57029 1.17375 1.19634 0.82427 0.79016 0.88104 1.90901 1.51125 1.57162 1.40385 1.19732 1.02392 0.97526 0.88045 0.75961 1.27642 0.93865 0.93491 0.93315 1.81310 1.07942 1.09750 1.10682 1.24593 0.86353 0.84178 0.81383 1.90521 1.53973 1.55565 1.30937 1.22142 0.98954 0.97043 1.00252 1.18793 0.91495 0.94896 0.95382 1.21706 0.98135 1.16248 1.21739 0.90266 1.26124 0.97144 1.00352 0.96951 1.70168 1.06659 1.43487 1.37543 0.85421 0.76981 0.79132 0.79021 1.18905 1.21699 1.18423 1.19782 0.93353 1.01794 0.94918 1.21102 0.94279 1.00130 0.98284 1.21427 0.94626 0.99275 0.98618 1.21521 1.01094 0.98800 0.92776 1.21421 0.93376 0.99439 0.99871 1.21204 0.95689 0.99678 0.97092 0.92801 0.93445 0.94862 0.90983 0.89522 0.74844 0.85277 0.87223 1.00261 0.99406 0.92980 0.85115 0.84084 0.84142 0.84274 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.52 71.98 0.61 -2.96 16 2 C -0.12 -2.12 5.59 30.60 0.17 -1.95 16 3 C 0.19 3.23 2.46 44.25 0.11 3.34 16 4 H 0.09 1.78 7.44 -2.39 -0.02 1.76 16 5 N -0.71 -11.76 4.87 -446.09 -2.17 -13.93 16 6 C 0.53 12.69 5.65 87.66 0.50 13.18 16 7 O -0.52 -17.84 11.65 19.71 0.23 -17.61 16 8 C -0.05 -1.11 2.84 -14.09 -0.04 -1.15 16 9 H 0.22 1.92 8.14 -2.38 -0.02 1.90 16 10 C 0.24 5.49 14.39 89.43 1.29 6.78 16 11 N -0.42 -11.47 18.54 20.01 0.37 -11.10 16 12 C 0.36 12.29 6.14 29.10 0.18 12.47 16 13 O -0.44 -19.93 14.31 21.26 0.30 -19.63 16 14 C -0.15 -5.21 5.58 29.85 0.17 -5.05 16 15 C 0.03 1.67 4.26 29.85 0.13 1.80 16 16 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 17 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 18 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 19 N -0.94 -59.13 13.29 21.45 0.28 -58.84 16 20 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 24 C -0.10 -1.34 4.95 -19.86 -0.10 -1.44 16 25 C -0.12 -1.35 9.05 22.27 0.20 -1.15 16 26 C -0.12 -1.19 10.05 22.27 0.22 -0.96 16 27 C -0.12 -1.19 10.05 22.27 0.22 -0.97 16 28 C -0.12 -1.32 10.05 22.27 0.22 -1.10 16 29 C -0.12 -1.54 9.67 22.27 0.22 -1.32 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.31 7.85 -2.39 -0.02 1.29 16 32 H 0.03 0.98 5.64 -2.39 -0.01 0.97 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.41 4.48 6.75 -92.71 -0.63 3.86 16 36 H 0.13 3.65 8.14 -2.38 -0.02 3.63 16 37 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 38 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 39 H -0.01 -0.75 8.10 -2.39 -0.02 -0.77 16 40 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.13 1.11 6.93 -2.91 -0.02 1.09 16 42 H 0.14 0.82 8.06 -2.91 -0.02 0.79 16 43 H 0.14 0.76 8.06 -2.91 -0.02 0.74 16 44 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 45 H 0.13 1.50 8.04 -2.91 -0.02 1.48 16 Total: -1.00 -82.76 385.25 6.22 -76.54 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.38 Total: 8.78 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 4.79 Total: -10.02 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -1.52 Total: -83.87 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: 0.53 Total: -37.23 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -82.76 6.22 -76.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813091328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.501 kcal (2) G-P(sol) polarization free energy of solvation -82.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds