Wall clock time and date at job start Tue Mar 31 2020 15:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47353 * 2 1 4 4 H 1.09003 * 109.47203 * 304.99676 * 3 2 1 5 5 N 1.46500 * 109.47545 * 64.99537 * 3 2 1 6 6 C 1.34772 * 120.00341 * 275.00706 * 5 3 2 7 7 O 1.21291 * 119.99744 * 359.97438 * 6 5 3 8 8 C 1.50696 * 120.00456 * 179.97438 * 6 5 3 9 9 H 1.09003 * 109.46899 * 59.99285 * 8 6 5 10 10 C 1.47199 * 109.47135 * 300.00061 * 8 6 5 11 11 N 5.07621 * 73.76756 * 70.77153 * 2 1 3 12 12 C 1.50701 * 109.47525 * 179.97438 * 8 6 5 13 13 O 1.20759 * 119.99821 * 30.00014 * 12 8 6 14 14 C 1.50694 * 119.99824 * 210.00040 * 12 8 6 15 15 C 1.53000 * 109.47039 * 179.97438 * 14 12 8 16 16 C 1.50697 * 109.47560 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99791 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00233 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00072 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99884 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46827 * 90.00462 * 20 18 16 22 22 H 1.48505 * 109.47255 * 209.99685 * 20 18 16 23 23 H 1.48496 * 109.47302 * 330.00215 * 20 18 16 24 24 C 1.50702 * 109.47442 * 185.00169 * 3 2 1 25 25 C 1.38234 * 120.00271 * 99.99361 * 24 3 2 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 3 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99485 * 279.97488 * 24 3 2 30 30 H 1.09000 * 109.47373 * 300.00068 * 1 2 3 31 31 H 1.08996 * 109.47249 * 60.00467 * 1 2 3 32 32 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46908 * 239.99318 * 2 1 3 34 34 H 1.09010 * 109.46815 * 119.99813 * 2 1 3 35 35 H 0.96999 * 119.99648 * 95.00007 * 5 3 2 36 36 H 1.09002 * 109.47407 * 299.99448 * 14 12 8 37 37 H 1.09005 * 109.47535 * 60.00031 * 14 12 8 38 38 H 1.08998 * 109.47217 * 300.00170 * 15 14 12 39 39 H 1.09005 * 109.46740 * 59.99779 * 15 14 12 40 40 H 0.97004 * 120.00127 * 179.97438 * 19 18 16 41 41 H 1.08001 * 119.99769 * 359.97438 * 25 24 3 42 42 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 44 44 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.00489 * 0.02562 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6524 2.0975 1.2517 6 6 0.4352 2.6644 1.3669 7 8 -0.3393 2.6326 0.4340 8 6 0.0362 3.3378 2.6546 9 1 0.7277 4.1531 2.8677 10 6 0.0781 2.3593 3.7535 11 7 0.1110 1.6051 4.6019 12 6 -1.3612 3.8864 2.5228 13 8 -2.1579 3.3411 1.7975 14 6 -1.7642 5.1153 3.2962 15 6 -3.2222 5.4587 2.9844 16 6 -3.6256 6.6873 3.7583 17 1 -2.9131 7.1747 4.4073 18 6 -4.9041 7.1891 3.6378 19 7 -5.7718 6.5952 2.8479 20 14 -5.4042 8.7116 4.5976 21 1 -5.1194 9.9231 3.7875 22 1 -6.8564 8.6501 4.9021 23 1 -4.6346 8.7721 5.8661 24 6 3.5419 1.4442 -0.1239 25 6 4.1342 1.6870 -1.3491 26 6 5.5118 1.6892 -1.4625 27 6 6.2973 1.4491 -0.3507 28 6 5.7051 1.2074 0.8748 29 6 4.3273 1.2035 0.9879 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.2719 2.1232 1.9977 36 1 -1.6559 4.9245 4.3640 37 1 -1.1253 5.9507 3.0098 38 1 -3.3302 5.6497 1.9168 39 1 -3.8614 4.6234 3.2706 40 1 -6.6715 6.9480 2.7634 41 1 3.5205 1.8750 -2.2177 42 1 5.9746 1.8792 -2.4197 43 1 7.3736 1.4464 -0.4401 44 1 6.3187 1.0195 1.7434 45 1 3.8647 1.0137 1.9451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813091329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:17 Heat of formation + Delta-G solvation = -26.837026 kcal Electronic energy + Delta-G solvation = -26947.680793 eV Core-core repulsion = 23123.256759 eV Total energy + Delta-G solvation = -3824.424034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.96189 -39.76940 -38.51134 -36.71426 -36.00372 -33.55782 -33.03475 -31.65577 -31.36583 -31.22381 -30.56065 -26.54974 -25.71740 -23.21257 -22.59525 -22.28677 -21.42858 -20.58064 -19.70248 -18.69042 -17.48212 -17.11931 -16.59839 -16.31833 -15.63102 -15.44679 -15.35960 -14.83877 -14.60939 -14.45992 -14.32955 -13.92953 -13.82667 -13.75625 -13.55020 -13.29294 -13.03837 -12.90392 -12.59634 -12.30466 -12.22506 -12.19526 -12.04908 -11.66034 -11.47867 -11.19429 -11.17018 -11.00813 -10.95099 -10.63281 -10.15297 -10.02819 -9.78739 -9.40439 -9.33218 -9.21479 -9.10568 -8.95125 -8.35632 -5.99018 -4.03801 0.89018 0.98634 1.99702 2.10386 2.46783 2.66196 2.87749 3.32268 3.38473 3.38864 3.40992 3.73140 4.13669 4.15854 4.38160 4.45234 4.47681 4.58374 4.71309 4.79877 4.85359 4.89876 5.07213 5.11162 5.24330 5.36282 5.43631 5.54393 5.60235 5.66267 5.67710 5.86920 5.96198 6.02655 6.04957 6.10603 6.11184 6.15835 6.27980 6.38782 6.56498 6.83586 7.10791 7.17827 7.67469 7.76932 7.82460 7.95975 8.00542 8.36730 9.03665 9.60296 11.11862 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.002335 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.235172 B =11987.572026 C =12154.924317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.187 3.813 4 H 0.102 0.898 5 N -0.724 5.724 6 C 0.527 3.473 7 O -0.478 6.478 8 C -0.070 4.070 9 H 0.162 0.838 10 C 0.216 3.784 11 N -0.395 5.395 12 C 0.361 3.639 13 O -0.388 6.388 14 C -0.153 4.153 15 C 0.030 3.970 16 C -0.528 4.528 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.090 4.090 25 C -0.106 4.106 26 C -0.116 4.116 27 C -0.120 4.120 28 C -0.116 4.116 29 C -0.114 4.114 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.252 -11.255 -6.521 29.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.083 3.917 4 H 0.120 0.880 5 N -0.379 5.379 6 C 0.309 3.691 7 O -0.349 6.349 8 C -0.095 4.095 9 H 0.179 0.821 10 C -0.102 4.102 11 N -0.071 5.071 12 C 0.228 3.772 13 O -0.254 6.254 14 C -0.190 4.190 15 C -0.007 4.007 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.090 4.090 25 C -0.124 4.124 26 C -0.134 4.134 27 C -0.138 4.138 28 C -0.134 4.134 29 C -0.133 4.133 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.234 0.766 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 25.047 -12.716 -6.431 28.817 hybrid contribution 0.216 1.183 0.706 1.395 sum 25.263 -11.533 -5.724 28.355 Atomic orbital electron populations 1.21835 0.94087 1.01044 1.03567 1.21956 0.97341 0.94849 1.02441 1.19930 0.89788 0.94176 0.87836 0.87971 1.46096 1.16585 1.58451 1.16742 1.19534 0.82003 0.79054 0.88479 1.90893 1.49705 1.55418 1.38841 1.19891 1.04961 0.96071 0.88613 0.82068 1.27678 0.94641 0.94072 0.93855 1.81239 1.07216 1.09034 1.09632 1.24417 0.84684 0.86759 0.81360 1.90496 1.50397 1.55738 1.28775 1.22263 1.03545 0.93592 0.99627 1.18980 0.87043 0.96793 0.97925 1.21174 0.97184 1.11479 1.26762 0.92454 1.25028 0.96686 0.97231 0.95438 1.69988 1.05170 1.40035 1.37545 0.86588 0.77761 0.83299 0.80290 1.20617 1.21240 1.19869 1.19923 0.94533 1.00363 0.94201 1.21040 0.95007 0.99372 0.97004 1.21170 0.93661 0.99736 0.98842 1.21204 0.99981 0.99694 0.92948 1.21149 0.94660 0.99768 0.97817 1.20940 0.93870 1.00309 0.98153 0.92315 0.91705 0.93320 0.90894 0.91823 0.76554 0.89390 0.88962 0.95556 0.95894 0.92882 0.85599 0.85816 0.86026 0.85894 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.51 37.16 0.32 -1.45 16 2 C -0.13 -1.17 5.59 -26.74 -0.15 -1.32 16 3 C 0.19 1.66 2.46 -69.08 -0.17 1.49 16 4 H 0.10 1.03 7.44 -51.93 -0.39 0.64 16 5 N -0.72 -6.59 4.87 -54.93 -0.27 -6.86 16 6 C 0.53 6.57 5.64 -10.99 -0.06 6.50 16 7 O -0.48 -7.88 11.79 -17.83 -0.21 -8.09 16 8 C -0.07 -0.82 2.85 -95.71 -0.27 -1.09 16 9 H 0.16 1.10 8.12 -51.93 -0.42 0.68 16 10 C 0.22 2.76 14.39 -20.77 -0.30 2.46 16 11 N -0.39 -5.74 18.54 42.14 0.78 -4.96 16 12 C 0.36 6.14 6.05 -29.04 -0.18 5.97 16 13 O -0.39 -8.36 14.51 -17.38 -0.25 -8.62 16 14 C -0.15 -2.80 5.56 -27.89 -0.16 -2.95 16 15 C 0.03 0.76 4.26 -27.88 -0.12 0.64 16 16 C -0.53 -14.51 9.11 -34.44 -0.31 -14.83 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.09 -0.68 4.95 -104.62 -0.52 -1.20 16 25 C -0.11 -0.76 9.67 -39.59 -0.38 -1.14 16 26 C -0.12 -0.74 10.05 -39.59 -0.40 -1.14 16 27 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 28 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 29 C -0.11 -0.79 9.06 -39.58 -0.36 -1.15 16 30 H 0.06 0.84 5.65 -51.93 -0.29 0.55 16 31 H 0.06 0.84 7.85 -51.93 -0.41 0.43 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 35 H 0.40 2.72 6.74 -40.82 -0.28 2.44 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.13 0.77 8.04 -52.49 -0.42 0.34 16 42 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.12 0.69 6.92 -52.49 -0.36 0.32 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -35.38 385.43 -8.71 -44.09 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.33 Total: -1.54 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -3.95 Total: -9.91 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 1.25 Total: -38.08 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.46 Total: -16.71 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.38 -8.71 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813091329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.254 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds