Wall clock time and date at job start Tue Mar 31 2020 15:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47353 * 2 1 4 4 H 1.09003 * 109.47203 * 304.99676 * 3 2 1 5 5 N 1.46500 * 109.47545 * 64.99537 * 3 2 1 6 6 C 1.34772 * 120.00341 * 275.00706 * 5 3 2 7 7 O 1.21291 * 119.99744 * 359.97438 * 6 5 3 8 8 C 1.50696 * 120.00456 * 179.97438 * 6 5 3 9 9 H 1.09003 * 109.46899 * 59.99285 * 8 6 5 10 10 C 1.47199 * 109.47135 * 300.00061 * 8 6 5 11 11 N 5.07621 * 73.76756 * 70.77153 * 2 1 3 12 12 C 1.50701 * 109.47525 * 179.97438 * 8 6 5 13 13 O 1.20759 * 119.99821 * 30.00014 * 12 8 6 14 14 C 1.50694 * 119.99824 * 210.00040 * 12 8 6 15 15 C 1.53000 * 109.47039 * 179.97438 * 14 12 8 16 16 C 1.50697 * 109.47560 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99791 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00233 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00072 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99884 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46827 * 90.00462 * 20 18 16 22 22 H 1.48505 * 109.47255 * 209.99685 * 20 18 16 23 23 H 1.48496 * 109.47302 * 330.00215 * 20 18 16 24 24 C 1.50702 * 109.47442 * 185.00169 * 3 2 1 25 25 C 1.38234 * 120.00271 * 99.99361 * 24 3 2 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 3 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99485 * 279.97488 * 24 3 2 30 30 H 1.09000 * 109.47373 * 300.00068 * 1 2 3 31 31 H 1.08996 * 109.47249 * 60.00467 * 1 2 3 32 32 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46908 * 239.99318 * 2 1 3 34 34 H 1.09010 * 109.46815 * 119.99813 * 2 1 3 35 35 H 0.96999 * 119.99648 * 95.00007 * 5 3 2 36 36 H 1.09002 * 109.47407 * 299.99448 * 14 12 8 37 37 H 1.09005 * 109.47535 * 60.00031 * 14 12 8 38 38 H 1.08998 * 109.47217 * 300.00170 * 15 14 12 39 39 H 1.09005 * 109.46740 * 59.99779 * 15 14 12 40 40 H 0.97004 * 120.00127 * 179.97438 * 19 18 16 41 41 H 1.08001 * 119.99769 * 359.97438 * 25 24 3 42 42 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 44 44 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.00489 * 0.02562 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6524 2.0975 1.2517 6 6 0.4352 2.6644 1.3669 7 8 -0.3393 2.6326 0.4340 8 6 0.0362 3.3378 2.6546 9 1 0.7277 4.1531 2.8677 10 6 0.0781 2.3593 3.7535 11 7 0.1110 1.6051 4.6019 12 6 -1.3612 3.8864 2.5228 13 8 -2.1579 3.3411 1.7975 14 6 -1.7642 5.1153 3.2962 15 6 -3.2222 5.4587 2.9844 16 6 -3.6256 6.6873 3.7583 17 1 -2.9131 7.1747 4.4073 18 6 -4.9041 7.1891 3.6378 19 7 -5.7718 6.5952 2.8479 20 14 -5.4042 8.7116 4.5976 21 1 -5.1194 9.9231 3.7875 22 1 -6.8564 8.6501 4.9021 23 1 -4.6346 8.7721 5.8661 24 6 3.5419 1.4442 -0.1239 25 6 4.1342 1.6870 -1.3491 26 6 5.5118 1.6892 -1.4625 27 6 6.2973 1.4491 -0.3507 28 6 5.7051 1.2074 0.8748 29 6 4.3273 1.2035 0.9879 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.2719 2.1232 1.9977 36 1 -1.6559 4.9245 4.3640 37 1 -1.1253 5.9507 3.0098 38 1 -3.3302 5.6497 1.9168 39 1 -3.8614 4.6234 3.2706 40 1 -6.6715 6.9480 2.7634 41 1 3.5205 1.8750 -2.2177 42 1 5.9746 1.8792 -2.4197 43 1 7.3736 1.4464 -0.4401 44 1 6.3187 1.0195 1.7434 45 1 3.8647 1.0137 1.9451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813091329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:16 Heat of formation + Delta-G solvation = -47.522298 kcal Electronic energy + Delta-G solvation = -26948.577774 eV Core-core repulsion = 23123.256759 eV Total energy + Delta-G solvation = -3825.321014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.97877 -40.60678 -39.58148 -37.83476 -36.84345 -35.56762 -34.04753 -33.15043 -32.18820 -31.87792 -31.63116 -27.92470 -27.01621 -24.18239 -23.65504 -23.21483 -22.39716 -21.41219 -21.06307 -19.72817 -18.68219 -18.27216 -17.85378 -17.22510 -16.75916 -16.43465 -16.42891 -16.08763 -15.88531 -15.69601 -15.38522 -15.07111 -14.63936 -14.55011 -14.31420 -14.24825 -14.15995 -14.00851 -13.96642 -13.76253 -13.43794 -13.21171 -13.07351 -12.83658 -12.79710 -12.54957 -12.46557 -11.99593 -11.89383 -11.86427 -11.74788 -11.65052 -11.29834 -11.19939 -10.54304 -10.46580 -10.22188 -9.80231 -9.64410 -8.16044 -6.29298 0.38677 0.51789 0.73545 1.09634 1.40040 1.44375 1.46202 1.56839 1.57067 1.97231 2.43741 2.67779 2.88504 2.95127 3.17678 3.45207 3.53705 3.93148 4.01573 4.04776 4.16874 4.19027 4.22581 4.30608 4.41026 4.55723 4.60396 4.63999 4.66807 4.75148 4.84514 4.95526 5.03387 5.11179 5.16028 5.16816 5.31388 5.39050 5.53002 5.58254 5.65528 5.66045 5.68713 5.87330 6.10823 6.12668 6.18884 6.31716 6.53208 6.91192 7.05031 7.41087 8.96405 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.002335 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.235172 B =11987.572026 C =12154.924317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.190 3.810 4 H 0.087 0.913 5 N -0.705 5.705 6 C 0.527 3.473 7 O -0.524 6.524 8 C -0.052 4.052 9 H 0.224 0.776 10 C 0.235 3.765 11 N -0.420 5.420 12 C 0.366 3.634 13 O -0.444 6.444 14 C -0.147 4.147 15 C 0.031 3.969 16 C -0.539 4.539 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.271 1.271 22 H -0.290 1.290 23 H -0.255 1.255 24 C -0.098 4.098 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.122 4.122 29 C -0.120 4.120 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.113 0.887 37 H 0.129 0.871 38 H -0.013 1.013 39 H -0.021 1.021 40 H 0.261 0.739 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.866 -10.291 -4.956 31.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C 0.086 3.914 4 H 0.105 0.895 5 N -0.359 5.359 6 C 0.310 3.690 7 O -0.398 6.398 8 C -0.077 4.077 9 H 0.240 0.760 10 C -0.083 4.083 11 N -0.097 5.097 12 C 0.236 3.764 13 O -0.313 6.313 14 C -0.184 4.184 15 C -0.006 4.006 16 C -0.577 4.577 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.196 1.196 22 H -0.216 1.216 23 H -0.178 1.178 24 C -0.098 4.098 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.142 4.142 28 C -0.139 4.139 29 C -0.138 4.138 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.252 0.748 36 H 0.131 0.869 37 H 0.147 0.853 38 H 0.005 0.995 39 H -0.002 1.002 40 H 0.070 0.930 41 H 0.147 0.853 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 28.740 -11.758 -4.826 31.425 hybrid contribution -0.875 0.832 0.168 1.219 sum 27.864 -10.926 -4.657 30.290 Atomic orbital electron populations 1.21768 0.96341 1.00624 1.01427 1.21906 0.95031 0.95412 1.03505 1.19858 0.90917 0.93561 0.87033 0.89540 1.45951 1.15615 1.56972 1.17400 1.19611 0.82415 0.78950 0.88060 1.90900 1.51210 1.57287 1.40430 1.19760 1.02391 0.97493 0.88081 0.75980 1.27626 0.93863 0.93509 0.93328 1.81272 1.07943 1.09780 1.10710 1.24605 0.86433 0.85808 0.79519 1.90506 1.52648 1.57163 1.30999 1.22148 0.99091 0.95784 1.01343 1.18801 0.91533 0.95030 0.95261 1.21734 0.97658 1.11724 1.26545 0.90200 1.26126 0.96971 1.00967 0.96554 1.70173 1.05655 1.42304 1.39778 0.85369 0.77104 0.78784 0.79291 1.19644 1.21630 1.17828 1.19778 0.93338 1.01816 0.94915 1.21200 0.95689 0.99659 0.97101 1.21418 0.93376 0.99440 0.99866 1.21522 1.01095 0.98799 0.92771 1.21426 0.94624 0.99265 0.98627 1.21100 0.94282 1.00157 0.98263 0.94872 0.93437 0.92804 0.89500 0.90986 0.74819 0.86941 0.85290 0.99502 1.00224 0.92998 0.85313 0.84272 0.84140 0.84084 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.51 71.98 0.61 -2.96 16 2 C -0.12 -2.12 5.59 30.59 0.17 -1.95 16 3 C 0.19 3.23 2.46 44.24 0.11 3.34 16 4 H 0.09 1.78 7.44 -2.39 -0.02 1.76 16 5 N -0.71 -11.73 4.87 -446.10 -2.17 -13.91 16 6 C 0.53 12.71 5.64 87.66 0.49 13.21 16 7 O -0.52 -17.89 11.79 19.29 0.23 -17.67 16 8 C -0.05 -1.11 2.85 -14.09 -0.04 -1.15 16 9 H 0.22 1.91 8.12 -2.39 -0.02 1.89 16 10 C 0.24 5.52 14.39 89.45 1.29 6.81 16 11 N -0.42 -11.52 18.54 20.00 0.37 -11.15 16 12 C 0.37 12.34 6.05 29.10 0.18 12.52 16 13 O -0.44 -20.11 14.51 20.91 0.30 -19.80 16 14 C -0.15 -5.18 5.56 29.85 0.17 -5.01 16 15 C 0.03 1.64 4.26 29.85 0.13 1.77 16 16 C -0.54 -29.61 9.11 25.60 0.23 -29.38 16 17 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 18 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 19 N -0.94 -59.15 13.29 21.45 0.28 -58.87 16 20 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 23 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 24 C -0.10 -1.33 4.95 -19.87 -0.10 -1.43 16 25 C -0.12 -1.53 9.67 22.27 0.22 -1.32 16 26 C -0.12 -1.32 10.05 22.27 0.22 -1.10 16 27 C -0.12 -1.19 10.05 22.27 0.22 -0.96 16 28 C -0.12 -1.18 10.05 22.27 0.22 -0.96 16 29 C -0.12 -1.34 9.06 22.27 0.20 -1.14 16 30 H 0.03 0.98 5.65 -2.39 -0.01 0.97 16 31 H 0.05 1.31 7.85 -2.39 -0.02 1.30 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.41 4.47 6.74 -92.71 -0.62 3.85 16 36 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.13 3.63 8.14 -2.38 -0.02 3.61 16 38 H -0.01 -0.81 8.10 -2.39 -0.02 -0.83 16 39 H -0.02 -1.26 8.10 -2.38 -0.02 -1.28 16 40 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.13 1.49 8.04 -2.91 -0.02 1.47 16 42 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 43 H 0.14 0.76 8.06 -2.91 -0.02 0.73 16 44 H 0.14 0.81 8.06 -2.91 -0.02 0.79 16 45 H 0.13 1.10 6.92 -2.91 -0.02 1.08 16 Total: -1.00 -82.96 385.43 6.21 -76.75 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.38 Total: 8.66 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 4.79 Total: -9.79 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -1.52 Total: -83.92 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: 0.53 Total: -37.47 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -82.96 6.21 -76.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813091329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.225 kcal (2) G-P(sol) polarization free energy of solvation -82.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds