Wall clock time and date at job start Tue Mar 31 2020 15:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47198 * 2 1 4 4 H 1.09003 * 109.47309 * 304.99945 * 3 2 1 5 5 N 1.46503 * 109.47264 * 64.99653 * 3 2 1 6 6 C 1.34779 * 120.00209 * 275.00275 * 5 3 2 7 7 O 1.21283 * 119.99886 * 359.97438 * 6 5 3 8 8 C 1.50690 * 120.00067 * 179.97438 * 6 5 3 9 9 H 1.09000 * 109.47486 * 299.99688 * 8 6 5 10 10 C 1.47203 * 109.47433 * 59.99792 * 8 6 5 11 11 N 6.16510 * 91.49285 * 30.88210 * 2 1 3 12 12 C 1.50701 * 109.47335 * 179.97438 * 8 6 5 13 13 O 1.20761 * 119.99952 * 334.99966 * 12 8 6 14 14 C 1.50703 * 120.00152 * 154.99813 * 12 8 6 15 15 C 1.53000 * 109.46912 * 180.02562 * 14 12 8 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99776 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46999 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46979 * 120.00420 * 20 18 16 23 23 H 1.48498 * 109.46942 * 240.00334 * 20 18 16 24 24 C 1.50700 * 109.47191 * 184.99957 * 3 2 1 25 25 C 1.38234 * 119.99739 * 279.72142 * 24 3 2 26 26 C 1.38240 * 119.99656 * 179.78683 * 25 24 3 27 27 C 1.38227 * 120.00328 * 0.44740 * 26 25 24 28 28 C 1.38239 * 119.99576 * 359.81125 * 27 26 25 29 29 C 1.38231 * 119.99950 * 100.00349 * 24 3 2 30 30 H 1.08995 * 109.47484 * 300.00501 * 1 2 3 31 31 H 1.09009 * 109.47065 * 60.00108 * 1 2 3 32 32 H 1.08994 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47416 * 240.00034 * 2 1 3 34 34 H 1.08999 * 109.47214 * 119.99757 * 2 1 3 35 35 H 0.96999 * 119.99777 * 94.99786 * 5 3 2 36 36 H 1.09002 * 109.47152 * 60.00224 * 14 12 8 37 37 H 1.09001 * 109.46980 * 300.00325 * 14 12 8 38 38 H 1.09001 * 109.47194 * 299.99742 * 15 14 12 39 39 H 1.08992 * 109.47399 * 59.99914 * 15 14 12 40 40 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 41 41 H 1.07999 * 120.00405 * 0.02562 * 25 24 3 42 42 H 1.08008 * 119.99785 * 180.27894 * 26 25 24 43 43 H 1.07997 * 120.00524 * 179.83179 * 27 26 25 44 44 H 1.08006 * 119.99490 * 180.02562 * 28 27 26 45 45 H 1.07993 * 120.00407 * 359.97331 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4350 2.6645 1.3669 7 8 -0.3394 2.6327 0.4340 8 6 0.0361 3.3377 2.6547 9 1 0.0671 2.6131 3.4683 10 6 0.9698 4.4388 2.9425 11 7 1.6906 5.2892 3.1633 12 6 -1.3613 3.8863 2.5229 13 8 -1.8017 4.1613 1.4326 14 6 -2.2092 4.0917 3.7517 15 6 -3.5723 4.6535 3.3427 16 6 -4.4204 4.8583 4.5715 17 1 -4.0263 4.6128 5.5466 18 6 -5.6989 5.3601 4.4509 19 7 -6.1785 5.6595 3.2635 20 14 -6.7504 5.6133 5.9739 21 1 -5.9847 5.2022 7.1780 22 1 -7.1191 7.0473 6.0881 23 1 -7.9831 4.7923 5.8665 24 6 3.5419 1.4443 -0.1238 25 6 4.3274 1.2088 0.9890 26 6 5.7050 1.2061 0.8745 27 6 6.2973 1.4480 -0.3508 28 6 5.5118 1.6888 -1.4625 29 6 4.1341 1.6872 -1.3490 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2718 2.1232 1.9978 36 1 -1.7130 4.7933 4.4224 37 1 -2.3475 3.1381 4.2612 38 1 -3.4342 5.6070 2.8330 39 1 -4.0682 3.9516 2.6723 40 1 -7.0779 6.0129 3.1787 41 1 3.8648 1.0231 1.9471 42 1 6.3187 1.0176 1.7431 43 1 7.3736 1.4486 -0.4397 44 1 5.9745 1.8774 -2.4200 45 1 3.5205 1.8753 -2.2176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813091330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:22 Heat of formation + Delta-G solvation = -47.549141 kcal Electronic energy + Delta-G solvation = -26936.447744 eV Core-core repulsion = 23111.125565 eV Total energy + Delta-G solvation = -3825.322178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.97175 -40.61295 -39.58081 -37.82858 -36.82633 -35.56575 -34.01414 -33.14304 -32.15468 -31.89393 -31.64886 -27.91434 -27.00349 -24.18546 -23.67146 -23.16263 -22.38760 -21.41024 -21.07468 -19.71088 -18.67733 -18.34420 -17.74493 -17.23741 -16.94421 -16.43046 -16.16139 -16.12873 -15.86116 -15.72743 -15.39449 -15.14986 -14.58148 -14.49172 -14.31467 -14.23268 -14.15798 -14.02894 -13.95555 -13.78801 -13.39301 -13.20946 -13.08829 -12.83878 -12.80640 -12.46928 -12.43124 -11.98413 -11.88223 -11.82746 -11.73248 -11.64493 -11.28089 -11.18544 -10.55567 -10.45243 -10.19069 -9.83098 -9.66439 -8.16230 -6.29369 0.36075 0.48755 0.74224 1.11026 1.40738 1.44435 1.44830 1.56749 1.58011 1.97014 2.43610 2.67902 2.86167 2.95730 3.17599 3.45288 3.53961 3.92806 4.02022 4.07850 4.17816 4.22513 4.23452 4.28667 4.45345 4.57307 4.60069 4.64209 4.66137 4.75951 4.93402 5.02244 5.07390 5.13876 5.15936 5.17100 5.33752 5.49511 5.53258 5.55253 5.62675 5.65523 5.66834 5.87416 6.08240 6.13326 6.18984 6.32946 6.53973 6.91359 7.06720 7.41024 8.96403 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024137 B = 0.002332 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.743985 B =12003.942237 C =12549.964807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.189 3.811 4 H 0.075 0.925 5 N -0.705 5.705 6 C 0.525 3.475 7 O -0.523 6.523 8 C -0.051 4.051 9 H 0.226 0.774 10 C 0.236 3.764 11 N -0.423 5.423 12 C 0.364 3.636 13 O -0.442 6.442 14 C -0.147 4.147 15 C 0.031 3.969 16 C -0.538 4.538 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.250 1.250 22 H -0.285 1.285 23 H -0.281 1.281 24 C -0.101 4.101 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.126 4.126 28 C -0.126 4.126 29 C -0.124 4.124 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.414 0.586 36 H 0.110 0.890 37 H 0.131 0.869 38 H -0.022 1.022 39 H -0.012 1.012 40 H 0.261 0.739 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.408 -15.898 -2.436 31.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.085 3.915 4 H 0.093 0.907 5 N -0.359 5.359 6 C 0.308 3.692 7 O -0.396 6.396 8 C -0.076 4.076 9 H 0.243 0.757 10 C -0.083 4.083 11 N -0.100 5.100 12 C 0.235 3.765 13 O -0.311 6.311 14 C -0.184 4.184 15 C -0.007 4.007 16 C -0.575 4.575 17 H 0.098 0.902 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.173 1.173 22 H -0.211 1.211 23 H -0.207 1.207 24 C -0.101 4.101 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.144 4.144 28 C -0.144 4.144 29 C -0.142 4.142 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.252 0.748 36 H 0.128 0.872 37 H 0.148 0.852 38 H -0.003 1.003 39 H 0.006 0.994 40 H 0.070 0.930 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 27.545 -14.431 -3.485 31.291 hybrid contribution -1.092 0.318 0.270 1.169 sum 26.453 -14.113 -3.215 30.154 Atomic orbital electron populations 1.21797 0.95897 1.01033 1.01639 1.21878 0.95456 0.94303 1.03886 1.19868 0.90583 0.94291 0.86761 0.90718 1.45958 1.15398 1.57231 1.17361 1.19641 0.82686 0.78973 0.87933 1.90909 1.51590 1.57657 1.39488 1.19745 0.91131 0.94332 1.02363 0.75738 1.27680 0.93473 0.93767 0.93364 1.81313 1.10577 1.09191 1.08875 1.24608 0.86927 0.73684 0.91277 1.90523 1.72969 1.36475 1.31173 1.22144 0.95498 1.05168 0.95555 1.18805 0.92031 0.94227 0.95590 1.21766 0.99067 1.42351 0.94359 0.90198 1.26128 0.99955 0.95324 0.99254 1.70177 1.17320 1.45255 1.25160 0.85322 0.78356 0.77454 0.79419 1.17331 1.21114 1.20738 1.19860 0.93771 1.01650 0.94867 1.21178 0.94183 0.99898 0.98438 1.21469 0.94816 0.99155 0.98546 1.21528 1.01075 0.98925 0.92884 1.21411 0.93400 0.99629 0.99913 1.21204 0.95720 0.99989 0.97299 0.93550 0.94397 0.92166 0.90114 0.89631 0.74781 0.87212 0.85153 1.00310 0.99379 0.93000 0.84134 0.83805 0.84160 0.84475 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.52 71.98 0.61 -2.43 16 2 C -0.12 -1.76 5.59 30.59 0.17 -1.59 16 3 C 0.19 3.23 2.46 44.24 0.11 3.34 16 4 H 0.07 1.69 7.44 -2.39 -0.02 1.67 16 5 N -0.70 -11.57 4.87 -446.09 -2.17 -13.75 16 6 C 0.53 12.57 5.65 87.65 0.49 13.07 16 7 O -0.52 -17.87 11.66 19.68 0.23 -17.64 16 8 C -0.05 -1.06 2.84 -14.09 -0.04 -1.11 16 9 H 0.23 1.76 8.14 -2.39 -0.02 1.74 16 10 C 0.24 5.56 14.39 89.44 1.29 6.84 16 11 N -0.42 -11.80 18.54 20.01 0.37 -11.43 16 12 C 0.36 12.23 6.14 29.10 0.18 12.40 16 13 O -0.44 -20.02 14.31 21.27 0.30 -19.72 16 14 C -0.15 -5.16 5.58 29.85 0.17 -4.99 16 15 C 0.03 1.62 4.26 29.85 0.13 1.75 16 16 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 17 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 18 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 19 N -0.94 -59.07 13.29 21.45 0.28 -58.79 16 20 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 21 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C -0.10 -1.49 4.96 -19.87 -0.10 -1.59 16 25 C -0.12 -1.36 9.06 22.27 0.20 -1.16 16 26 C -0.12 -1.28 10.05 22.27 0.22 -1.06 16 27 C -0.13 -1.40 10.05 22.27 0.22 -1.17 16 28 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 29 C -0.12 -1.87 9.67 22.27 0.22 -1.65 16 30 H 0.05 1.08 5.65 -2.39 -0.01 1.06 16 31 H 0.04 0.97 7.85 -2.38 -0.02 0.95 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.41 4.29 6.72 -92.71 -0.62 3.66 16 36 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 37 H 0.13 3.61 8.14 -2.39 -0.02 3.59 16 38 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 39 H -0.01 -0.73 8.10 -2.39 -0.02 -0.75 16 40 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.14 0.95 6.90 -2.91 -0.02 0.93 16 42 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.14 0.95 8.06 -2.91 -0.02 0.93 16 44 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 45 H 0.12 1.77 8.04 -2.91 -0.02 1.74 16 Total: -1.00 -83.89 385.20 6.22 -77.67 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.39 Total: 7.95 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 4.79 Total: -10.06 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.52 Total: -83.97 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: 0.53 Total: -37.35 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -83.89 6.22 -77.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813091330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.123 kcal (2) G-P(sol) polarization free energy of solvation -83.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds