Wall clock time and date at job start Tue Mar 31 2020 15:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46856 * 2 1 4 4 H 1.08996 * 109.47072 * 305.58819 * 3 2 1 5 5 C 1.50696 * 109.47072 * 185.58410 * 3 2 1 6 6 H 1.08000 * 120.00802 * 274.99224 * 5 3 2 7 7 C 1.37884 * 119.99457 * 94.99759 * 5 3 2 8 8 N 1.31516 * 119.99443 * 184.83654 * 7 5 3 9 9 Si 1.86794 * 120.00024 * 4.84037 * 7 5 3 10 10 H 1.48498 * 109.47316 * 84.86637 * 9 7 5 11 11 H 1.48504 * 109.47080 * 204.86445 * 9 7 5 12 12 H 1.48494 * 109.47509 * 324.86463 * 9 7 5 13 13 O 1.45206 * 109.46875 * 65.58871 * 3 2 1 14 14 C 1.34226 * 117.00002 * 269.99817 * 13 3 2 15 15 O 1.20830 * 120.00030 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00233 * 179.97438 * 14 13 3 17 17 H 1.08997 * 109.47428 * 300.00864 * 16 14 13 18 18 C 1.53003 * 109.46712 * 60.00200 * 16 14 13 19 19 C 1.52997 * 109.47374 * 179.97438 * 16 14 13 20 20 C 1.50698 * 109.47409 * 175.00125 * 19 16 14 21 21 C 1.39678 * 119.64681 * 124.99926 * 20 19 16 22 22 N 1.31332 * 120.71124 * 180.02562 * 21 20 19 23 23 C 1.33744 * 119.71056 * 359.97438 * 22 21 20 24 24 C 1.40592 * 121.10897 * 180.02562 * 23 22 21 25 25 C 1.36059 * 119.71762 * 179.97438 * 24 23 22 26 26 C 1.39399 * 120.97322 * 0.02586 * 25 24 23 27 27 C 1.36072 * 120.96385 * 359.95245 * 26 25 24 28 28 C 1.40581 * 119.71617 * 0.04107 * 27 26 25 29 29 N 1.31329 * 119.64628 * 304.73596 * 20 19 16 30 30 H 1.09008 * 109.46229 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47285 * 60.00088 * 1 2 3 32 32 H 1.08996 * 109.47174 * 299.99636 * 1 2 3 33 33 H 1.09001 * 109.47416 * 119.99768 * 2 1 3 34 34 H 1.09004 * 109.47448 * 240.00396 * 2 1 3 35 35 H 0.97004 * 119.99626 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47132 * 179.97438 * 18 16 14 37 37 H 1.08996 * 109.47411 * 300.00190 * 18 16 14 38 38 H 1.09004 * 109.47000 * 60.00329 * 18 16 14 39 39 H 1.09003 * 109.47261 * 295.00546 * 19 16 14 40 40 H 1.09002 * 109.47104 * 55.00023 * 19 16 14 41 41 H 1.08004 * 119.64090 * 0.02562 * 21 20 19 42 42 H 1.08002 * 120.13855 * 359.93538 * 24 23 22 43 43 H 1.08002 * 119.51361 * 179.97438 * 25 24 23 44 44 H 1.07996 * 119.52382 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.14009 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 3.5406 1.4449 -0.1383 6 1 4.1638 1.3341 0.7368 7 6 4.1180 1.5885 -1.3821 8 7 5.4230 1.4954 -1.5159 9 14 3.0467 1.9153 -2.8770 10 1 2.7807 3.3722 -2.9864 11 1 3.7471 1.4469 -4.0999 12 1 1.7607 1.1868 -2.7334 13 8 1.6678 2.0874 1.2466 14 6 0.4849 2.7211 1.2755 15 8 -0.2167 2.7360 0.2919 16 6 0.0312 3.4129 2.5351 17 1 -0.0398 2.6855 3.3438 18 6 1.0412 4.4983 2.9128 19 6 -1.3393 4.0515 2.3009 20 6 -1.8480 4.6371 3.5929 21 6 -2.2195 5.9827 3.6426 22 7 -2.6651 6.5147 4.7576 23 6 -2.7653 5.7611 5.8580 24 6 -3.2390 6.3001 7.0670 25 6 -3.3299 5.5075 8.1691 26 6 -2.9592 4.1646 8.1196 27 6 -2.4967 3.6081 6.9672 28 6 -2.3888 4.3952 5.8074 29 7 -1.9423 3.8755 4.6587 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 5.8292 1.5960 -2.3910 36 1 0.7128 4.9990 3.8237 37 1 2.0177 4.0438 3.0795 38 1 1.1122 5.2257 2.1042 39 1 -1.2496 4.8409 1.5546 40 1 -2.0375 3.2935 1.9458 41 1 -2.1394 6.5921 2.7546 42 1 -3.5289 7.3391 7.1207 43 1 -3.6938 5.9251 9.0962 44 1 -3.0404 3.5570 9.0086 45 1 -2.2136 2.5661 6.9437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816039096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:44 Heat of formation + Delta-G solvation = -37.612512 kcal Electronic energy + Delta-G solvation = -27368.363148 eV Core-core repulsion = 23543.471854 eV Total energy + Delta-G solvation = -3824.891294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73437 -39.92974 -38.07310 -36.32535 -35.35893 -34.30017 -33.34001 -31.99388 -31.11235 -30.86092 -27.93512 -27.54750 -25.39322 -24.49931 -23.22497 -22.56899 -22.47966 -20.35875 -19.38017 -18.88143 -18.33944 -17.43713 -16.80608 -16.41194 -16.05480 -15.78693 -15.34322 -15.11775 -14.75541 -14.42449 -14.17376 -14.10022 -13.63620 -13.45810 -12.87948 -12.62928 -12.42965 -12.31836 -12.15035 -12.12250 -12.08561 -11.99902 -11.91265 -11.83773 -11.58100 -11.34378 -11.12111 -11.00173 -10.99199 -10.77040 -10.18713 -9.93009 -9.66436 -9.34348 -9.30802 -9.15399 -9.05244 -8.87669 -8.70819 -6.28452 -4.32139 -0.07826 0.25609 1.64829 2.46644 2.90582 3.19501 3.28240 3.33851 3.43758 3.69884 3.74925 3.84771 3.99100 4.25421 4.41712 4.46788 4.70029 4.74446 4.82366 4.93138 5.01926 5.06026 5.07962 5.28733 5.49028 5.52807 5.58154 5.71231 5.75731 5.79069 5.81584 5.91022 5.93178 5.98386 5.99822 6.08106 6.12212 6.31125 6.36358 6.43702 6.63106 6.79661 6.83929 7.01912 7.16664 7.39540 7.48529 7.54853 8.24197 8.65109 8.83139 9.31011 10.82881 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.002558 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.444746 B =10945.359788 C =11129.107577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.187 3.813 4 H 0.048 0.952 5 C -0.518 4.518 6 H 0.085 0.915 7 C 0.082 3.918 8 N -0.882 5.882 9 Si 0.868 3.132 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.259 1.259 13 O -0.344 6.344 14 C 0.457 3.543 15 O -0.524 6.524 16 C -0.079 4.079 17 H 0.112 0.888 18 C -0.142 4.142 19 C -0.055 4.055 20 C 0.120 3.880 21 C 0.086 3.914 22 N -0.424 5.424 23 C 0.069 3.931 24 C -0.082 4.082 25 C -0.104 4.104 26 C -0.101 4.101 27 C -0.083 4.083 28 C 0.086 3.914 29 N -0.422 5.422 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.270 0.730 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.176 0.824 42 H 0.138 0.862 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.696 7.861 16.666 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.134 3.866 4 H 0.066 0.934 5 C -0.556 4.556 6 H 0.103 0.897 7 C -0.122 4.122 8 N -0.518 5.518 9 Si 0.694 3.306 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.183 1.183 13 O -0.259 6.259 14 C 0.300 3.700 15 O -0.415 6.415 16 C -0.099 4.099 17 H 0.130 0.870 18 C -0.200 4.200 19 C -0.094 4.094 20 C -0.036 4.036 21 C -0.090 4.090 22 N -0.137 5.137 23 C -0.055 4.055 24 C -0.102 4.102 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.102 4.102 28 C -0.039 4.039 29 N -0.137 5.137 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.193 0.807 42 H 0.156 0.844 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.751 7.824 16.441 25.428 hybrid contribution -0.451 0.154 -1.001 1.109 sum -18.202 7.978 15.439 25.166 Atomic orbital electron populations 1.21923 0.97475 0.99764 1.01547 1.22097 0.93609 0.98950 1.02306 1.21034 0.96047 0.88836 0.80640 0.93446 1.20801 0.87923 1.51164 0.95663 0.89713 1.24913 0.94958 0.93748 0.98612 1.69860 1.09519 1.47814 1.24648 0.86972 0.81289 0.79848 0.82460 1.19601 1.20793 1.18336 1.86652 1.34003 1.62095 1.43174 1.23272 0.80791 0.76645 0.89275 1.90589 1.55136 1.59097 1.36640 1.20914 0.94593 0.98723 0.95621 0.86955 1.21759 0.99415 0.97579 1.01227 1.20491 0.95982 1.01845 0.91046 1.22520 0.94111 0.91757 0.95181 1.23979 0.94228 0.93744 0.97011 1.68700 1.10147 1.36352 0.98549 1.19619 1.00241 0.91505 0.94175 1.20800 0.98349 1.00691 0.90318 1.21000 0.98859 0.93869 0.98622 1.21018 0.97573 0.95331 0.98128 1.20863 0.98522 1.00358 0.90455 1.19625 0.98384 0.92313 0.93562 1.68525 1.10512 1.36599 0.98073 0.94133 0.92782 0.93801 0.91971 0.91121 0.91999 0.92599 0.90335 0.91831 0.88531 0.88131 0.80666 0.84432 0.84796 0.84717 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.57 37.16 0.32 -2.57 16 2 C -0.13 -2.88 5.63 -26.73 -0.15 -3.03 16 3 C 0.19 4.60 1.90 -27.88 -0.05 4.55 16 4 H 0.05 1.22 4.31 -51.93 -0.22 1.00 16 5 C -0.52 -14.53 9.25 -34.44 -0.32 -14.85 16 6 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 7 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 8 N -0.88 -26.07 13.96 55.43 0.77 -25.30 16 9 Si 0.87 21.24 26.99 -169.99 -4.59 16.65 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.26 -6.17 6.82 56.52 0.39 -5.78 16 13 O -0.34 -7.71 9.72 -39.25 -0.38 -8.09 16 14 C 0.46 8.73 5.74 36.00 0.21 8.94 16 15 O -0.52 -10.85 13.06 -18.75 -0.24 -11.09 16 16 C -0.08 -1.13 2.76 -91.77 -0.25 -1.39 16 17 H 0.11 1.59 7.81 -51.93 -0.41 1.19 16 18 C -0.14 -1.90 8.94 37.16 0.33 -1.57 16 19 C -0.06 -0.67 4.44 -27.89 -0.12 -0.79 16 20 C 0.12 1.40 5.17 -82.27 -0.43 0.97 16 21 C 0.09 0.91 10.83 -17.23 -0.19 0.72 16 22 N -0.42 -5.00 10.46 -10.80 -0.11 -5.11 16 23 C 0.07 0.79 6.59 -84.80 -0.56 0.23 16 24 C -0.08 -0.71 9.99 -39.48 -0.39 -1.11 16 25 C -0.10 -0.68 9.95 -39.93 -0.40 -1.08 16 26 C -0.10 -0.69 9.95 -39.93 -0.40 -1.08 16 27 C -0.08 -0.76 9.99 -39.48 -0.39 -1.16 16 28 C 0.09 1.01 6.59 -84.80 -0.56 0.45 16 29 N -0.42 -5.38 9.90 -7.06 -0.07 -5.45 16 30 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.05 1.09 7.83 -51.93 -0.41 0.68 16 32 H 0.04 0.83 6.04 -51.93 -0.31 0.51 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.05 0.67 7.38 -51.93 -0.38 0.28 16 37 H 0.08 1.15 8.11 -51.93 -0.42 0.72 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.03 7.87 -51.93 -0.41 0.62 16 40 H 0.10 1.26 7.95 -51.93 -0.41 0.85 16 41 H 0.18 1.31 7.94 -52.48 -0.42 0.89 16 42 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 44 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 45 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -32.69 373.27 -8.80 -41.49 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.35 Total: 1.82 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -3.45 Total: -10.55 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.59 Total: -35.86 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.63 Total: -19.18 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.59 Total: 16.65 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.69 -8.80 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816039096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.877 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds