Wall clock time and date at job start Tue Mar 31 2020 15:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46856 * 2 1 4 4 H 1.08996 * 109.47072 * 305.58819 * 3 2 1 5 5 C 1.50696 * 109.47072 * 185.58410 * 3 2 1 6 6 H 1.08000 * 120.00802 * 274.99224 * 5 3 2 7 7 C 1.37884 * 119.99457 * 94.99759 * 5 3 2 8 8 N 1.31516 * 119.99443 * 184.83654 * 7 5 3 9 9 Si 1.86794 * 120.00024 * 4.84037 * 7 5 3 10 10 H 1.48498 * 109.47316 * 84.86637 * 9 7 5 11 11 H 1.48504 * 109.47080 * 204.86445 * 9 7 5 12 12 H 1.48494 * 109.47509 * 324.86463 * 9 7 5 13 13 O 1.45206 * 109.46875 * 65.58871 * 3 2 1 14 14 C 1.34226 * 117.00002 * 269.99817 * 13 3 2 15 15 O 1.20830 * 120.00030 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00233 * 179.97438 * 14 13 3 17 17 H 1.08997 * 109.47428 * 300.00864 * 16 14 13 18 18 C 1.53003 * 109.46712 * 60.00200 * 16 14 13 19 19 C 1.52997 * 109.47374 * 179.97438 * 16 14 13 20 20 C 1.50698 * 109.47409 * 175.00125 * 19 16 14 21 21 C 1.39678 * 119.64681 * 124.99926 * 20 19 16 22 22 N 1.31332 * 120.71124 * 180.02562 * 21 20 19 23 23 C 1.33744 * 119.71056 * 359.97438 * 22 21 20 24 24 C 1.40592 * 121.10897 * 180.02562 * 23 22 21 25 25 C 1.36059 * 119.71762 * 179.97438 * 24 23 22 26 26 C 1.39399 * 120.97322 * 0.02586 * 25 24 23 27 27 C 1.36072 * 120.96385 * 359.95245 * 26 25 24 28 28 C 1.40581 * 119.71617 * 0.04107 * 27 26 25 29 29 N 1.31329 * 119.64628 * 304.73596 * 20 19 16 30 30 H 1.09008 * 109.46229 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47285 * 60.00088 * 1 2 3 32 32 H 1.08996 * 109.47174 * 299.99636 * 1 2 3 33 33 H 1.09001 * 109.47416 * 119.99768 * 2 1 3 34 34 H 1.09004 * 109.47448 * 240.00396 * 2 1 3 35 35 H 0.97004 * 119.99626 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47132 * 179.97438 * 18 16 14 37 37 H 1.08996 * 109.47411 * 300.00190 * 18 16 14 38 38 H 1.09004 * 109.47000 * 60.00329 * 18 16 14 39 39 H 1.09003 * 109.47261 * 295.00546 * 19 16 14 40 40 H 1.09002 * 109.47104 * 55.00023 * 19 16 14 41 41 H 1.08004 * 119.64090 * 0.02562 * 21 20 19 42 42 H 1.08002 * 120.13855 * 359.93538 * 24 23 22 43 43 H 1.08002 * 119.51361 * 179.97438 * 25 24 23 44 44 H 1.07996 * 119.52382 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.14009 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 3.5406 1.4449 -0.1383 6 1 4.1638 1.3341 0.7368 7 6 4.1180 1.5885 -1.3821 8 7 5.4230 1.4954 -1.5159 9 14 3.0467 1.9153 -2.8770 10 1 2.7807 3.3722 -2.9864 11 1 3.7471 1.4469 -4.0999 12 1 1.7607 1.1868 -2.7334 13 8 1.6678 2.0874 1.2466 14 6 0.4849 2.7211 1.2755 15 8 -0.2167 2.7360 0.2919 16 6 0.0312 3.4129 2.5351 17 1 -0.0398 2.6855 3.3438 18 6 1.0412 4.4983 2.9128 19 6 -1.3393 4.0515 2.3009 20 6 -1.8480 4.6371 3.5929 21 6 -2.2195 5.9827 3.6426 22 7 -2.6651 6.5147 4.7576 23 6 -2.7653 5.7611 5.8580 24 6 -3.2390 6.3001 7.0670 25 6 -3.3299 5.5075 8.1691 26 6 -2.9592 4.1646 8.1196 27 6 -2.4967 3.6081 6.9672 28 6 -2.3888 4.3952 5.8074 29 7 -1.9423 3.8755 4.6587 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 5.8292 1.5960 -2.3910 36 1 0.7128 4.9990 3.8237 37 1 2.0177 4.0438 3.0795 38 1 1.1122 5.2257 2.1042 39 1 -1.2496 4.8409 1.5546 40 1 -2.0375 3.2935 1.9458 41 1 -2.1394 6.5921 2.7546 42 1 -3.5289 7.3391 7.1207 43 1 -3.6938 5.9251 9.0962 44 1 -3.0404 3.5570 9.0086 45 1 -2.2136 2.5661 6.9437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816039096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:43 Heat of formation + Delta-G solvation = -56.581443 kcal Electronic energy + Delta-G solvation = -27369.185703 eV Core-core repulsion = 23543.471854 eV Total energy + Delta-G solvation = -3825.713848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.50777 -41.51925 -38.84727 -37.84557 -36.40626 -35.44304 -35.13480 -33.89676 -31.96266 -31.52824 -29.80405 -28.50708 -26.35690 -25.59177 -24.80541 -23.77323 -23.22739 -21.95186 -20.96272 -19.64930 -19.29330 -19.04187 -18.40445 -17.77104 -17.25311 -17.09643 -16.39063 -16.18475 -15.86234 -15.43855 -15.29489 -15.14493 -14.88400 -14.83760 -14.44135 -13.98680 -13.88925 -13.79108 -13.53766 -13.23892 -13.10629 -12.95468 -12.88419 -12.81220 -12.72655 -12.66247 -12.63151 -12.52094 -12.16123 -12.11178 -11.95300 -11.85457 -11.38714 -11.17140 -10.98575 -10.77635 -10.13775 -9.86550 -9.55176 -8.46184 -6.55442 -0.78890 -0.47598 0.91408 1.25880 1.29420 1.35430 1.40192 1.78230 1.99876 2.20545 2.86849 2.93745 2.98754 3.14437 3.22839 3.60651 3.62597 3.85780 3.90743 3.99095 4.12265 4.18794 4.21139 4.26096 4.26653 4.32385 4.42118 4.43930 4.59702 4.67662 4.71314 4.79452 4.91119 4.93544 5.01724 5.04188 5.09362 5.11699 5.18213 5.20620 5.23631 5.36026 5.38708 5.48709 5.72469 5.76728 6.19863 6.24212 6.53129 6.69046 6.96248 7.13759 8.69291 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023999 B = 0.002558 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.444746 B =10945.359788 C =11129.107577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.190 3.810 4 H 0.040 0.960 5 C -0.531 4.531 6 H 0.045 0.955 7 C 0.034 3.966 8 N -0.925 5.925 9 Si 0.928 3.072 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.248 1.248 13 O -0.359 6.359 14 C 0.454 3.546 15 O -0.536 6.536 16 C -0.067 4.067 17 H 0.114 0.886 18 C -0.137 4.137 19 C -0.046 4.046 20 C 0.111 3.889 21 C 0.083 3.917 22 N -0.440 5.440 23 C 0.049 3.951 24 C -0.098 4.098 25 C -0.088 4.088 26 C -0.086 4.086 27 C -0.104 4.104 28 C 0.061 3.939 29 N -0.443 5.443 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.275 0.725 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.203 0.797 42 H 0.150 0.850 43 H 0.172 0.828 44 H 0.169 0.831 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.291 8.609 17.928 28.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.137 3.863 4 H 0.057 0.943 5 C -0.568 4.568 6 H 0.063 0.937 7 C -0.167 4.167 8 N -0.563 5.563 9 Si 0.750 3.250 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.172 1.172 13 O -0.276 6.276 14 C 0.299 3.701 15 O -0.427 6.427 16 C -0.087 4.087 17 H 0.132 0.868 18 C -0.194 4.194 19 C -0.084 4.084 20 C -0.044 4.044 21 C -0.092 4.092 22 N -0.154 5.154 23 C -0.075 4.075 24 C -0.118 4.118 25 C -0.108 4.108 26 C -0.106 4.106 27 C -0.123 4.123 28 C -0.064 4.064 29 N -0.159 5.159 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.219 0.781 42 H 0.168 0.832 43 H 0.189 0.811 44 H 0.187 0.813 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.362 8.573 17.718 28.320 hybrid contribution 0.328 -0.071 -1.155 1.203 sum -20.034 8.502 16.562 27.349 Atomic orbital electron populations 1.21813 0.95060 1.01677 1.01111 1.22025 0.95693 0.96971 1.02233 1.20816 0.93799 0.90447 0.81258 0.94269 1.20944 0.89802 1.51445 0.94609 0.93715 1.25672 0.96112 0.93371 1.01507 1.69971 1.11296 1.49220 1.25771 0.86027 0.79994 0.79910 0.79044 1.19200 1.19427 1.17162 1.86611 1.36124 1.62900 1.41926 1.24113 0.79415 0.75902 0.90680 1.90572 1.55127 1.59411 1.37635 1.20944 0.96104 0.98711 0.92938 0.86771 1.21713 0.98205 0.97254 1.02211 1.20406 0.94088 1.01990 0.91942 1.22409 0.95092 0.92261 0.94685 1.24331 0.93681 0.93539 0.97681 1.68739 1.10814 1.36746 0.99072 1.20026 1.00739 0.91629 0.95089 1.21088 0.98852 1.01759 0.90056 1.21470 0.96611 0.93445 0.99260 1.21465 0.95066 0.95782 0.98272 1.21086 0.99840 1.00670 0.90732 1.19982 0.99330 0.93078 0.93984 1.68458 1.11119 1.37452 0.98826 0.91062 0.93518 0.93855 0.91850 0.91469 0.91525 0.90954 0.92034 0.91239 0.87022 0.88734 0.78065 0.83199 0.81069 0.81307 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.57 71.98 0.62 -4.53 16 2 C -0.13 -5.70 5.63 30.60 0.17 -5.52 16 3 C 0.19 9.44 1.90 29.85 0.06 9.50 16 4 H 0.04 2.01 4.31 -2.39 -0.01 2.00 16 5 C -0.53 -30.76 9.25 25.60 0.24 -30.52 16 6 H 0.04 2.87 8.06 -2.91 -0.02 2.85 16 7 C 0.03 1.96 5.47 84.66 0.46 2.43 16 8 N -0.92 -56.08 13.96 21.45 0.30 -55.78 16 9 Si 0.93 43.83 26.99 68.60 1.85 45.68 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.25 -11.19 6.82 99.48 0.68 -10.51 16 13 O -0.36 -16.37 9.72 -51.38 -0.50 -16.87 16 14 C 0.45 17.26 5.74 71.24 0.41 17.67 16 15 O -0.54 -21.79 13.06 21.95 0.29 -21.50 16 16 C -0.07 -1.91 2.76 -11.54 -0.03 -1.94 16 17 H 0.11 3.22 7.81 -2.39 -0.02 3.20 16 18 C -0.14 -3.59 8.94 71.98 0.64 -2.95 16 19 C -0.05 -1.07 4.44 29.85 0.13 -0.93 16 20 C 0.11 2.51 5.17 42.98 0.22 2.73 16 21 C 0.08 1.67 10.83 85.12 0.92 2.59 16 22 N -0.44 -10.01 10.46 -188.09 -1.97 -11.98 16 23 C 0.05 1.08 6.59 40.30 0.27 1.34 16 24 C -0.10 -1.50 9.99 22.34 0.22 -1.28 16 25 C -0.09 -0.86 9.95 22.04 0.22 -0.64 16 26 C -0.09 -0.91 9.95 22.05 0.22 -0.69 16 27 C -0.10 -1.78 9.99 22.34 0.22 -1.56 16 28 C 0.06 1.39 6.59 40.29 0.27 1.66 16 29 N -0.44 -11.19 9.90 -176.25 -1.74 -12.93 16 30 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.05 1.78 7.83 -2.39 -0.02 1.76 16 32 H 0.04 1.58 6.04 -2.39 -0.01 1.56 16 33 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 35 H 0.28 15.43 8.31 -92.71 -0.77 14.65 16 36 H 0.07 1.68 7.38 -2.39 -0.02 1.66 16 37 H 0.06 1.82 8.11 -2.39 -0.02 1.80 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 39 H 0.11 2.22 7.87 -2.39 -0.02 2.20 16 40 H 0.09 2.31 7.95 -2.39 -0.02 2.29 16 41 H 0.20 2.67 7.94 -2.91 -0.02 2.64 16 42 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 43 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 44 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 45 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -73.03 373.27 4.45 -68.58 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.97 Total: 17.45 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.26 Total: -12.65 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -3.41 Total: -80.69 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.21 Total: -38.37 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.85 Total: 45.68 kcal Total: -73.03 4.45 -68.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816039096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.001 kcal (2) G-P(sol) polarization free energy of solvation -73.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds