Wall clock time and date at job start Tue Mar 31 2020 15:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34228 * 117.00100 * 89.99663 * 13 3 2 15 15 O 1.20817 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.47381 * 299.99866 * 16 14 13 18 18 C 1.52998 * 109.46940 * 60.00230 * 16 14 13 19 19 C 1.53003 * 109.46847 * 179.97438 * 16 14 13 20 20 C 1.50700 * 109.47142 * 175.00070 * 19 16 14 21 21 C 1.39673 * 119.64709 * 125.00274 * 20 19 16 22 22 N 1.31333 * 120.71061 * 180.02562 * 21 20 19 23 23 C 1.33748 * 119.71164 * 359.96932 * 22 21 20 24 24 C 1.40593 * 121.10646 * 180.02562 * 23 22 21 25 25 C 1.36058 * 119.71412 * 179.97438 * 24 23 22 26 26 C 1.39413 * 120.97145 * 0.02562 * 25 24 23 27 27 C 1.36060 * 120.96551 * 359.95566 * 26 25 24 28 28 C 1.40588 * 119.71666 * 0.04060 * 27 26 25 29 29 N 1.31337 * 119.64405 * 304.73338 * 20 19 16 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47473 * 60.00171 * 18 16 14 37 37 H 1.09007 * 109.46814 * 179.97438 * 18 16 14 38 38 H 1.09004 * 109.47075 * 299.99139 * 18 16 14 39 39 H 1.08994 * 109.47517 * 295.00429 * 19 16 14 40 40 H 1.09004 * 109.47088 * 55.00193 * 19 16 14 41 41 H 1.08001 * 119.64099 * 359.97438 * 21 20 19 42 42 H 1.08000 * 120.13881 * 359.93798 * 24 23 22 43 43 H 1.08004 * 119.51540 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.51371 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.14166 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2558 15 8 -0.2192 2.7369 -0.2654 16 6 0.0074 3.4227 -2.5083 17 1 0.7244 4.1970 -2.7808 18 6 -0.1030 2.4064 -3.6466 19 6 -1.3614 4.0592 -2.2590 20 6 -1.7714 4.8588 -3.4689 21 6 -2.9965 4.5978 -4.0868 22 7 -3.3743 5.2816 -5.1426 23 6 -2.5786 6.2388 -5.6320 24 6 -2.9541 6.9890 -6.7602 25 6 -2.1230 7.9565 -7.2339 26 6 -0.9003 8.2171 -6.6170 27 6 -0.5036 7.5118 -5.5232 28 6 -1.3355 6.5041 -5.0044 29 7 -0.9752 5.7972 -3.9276 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8293 -0.0605 2.9501 36 1 -0.8201 1.6320 -3.3741 37 1 -0.4400 2.9106 -4.5524 38 1 0.8720 1.9525 -3.8243 39 1 -2.0976 3.2771 -2.0739 40 1 -1.3039 4.7166 -1.3915 41 1 -3.6396 3.8249 -3.6927 42 1 -3.8979 6.7976 -7.2490 43 1 -2.4149 8.5311 -8.1006 44 1 -0.2586 8.9903 -7.0131 45 1 0.4463 7.7251 -5.0555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816039097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:50 Heat of formation + Delta-G solvation = -38.243006 kcal Electronic energy + Delta-G solvation = -27274.650141 eV Core-core repulsion = 23449.731507 eV Total energy + Delta-G solvation = -3824.918634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.70839 -39.79285 -38.03552 -36.19515 -35.29768 -34.24506 -33.45411 -31.40648 -31.05552 -30.83713 -27.70786 -27.18006 -25.36748 -24.46659 -23.35675 -22.54703 -22.42592 -20.23756 -19.21725 -18.84892 -18.29530 -17.12443 -16.69900 -16.42508 -15.71033 -15.60630 -15.29232 -15.08079 -14.71573 -14.50867 -14.22055 -14.09226 -13.49263 -13.11932 -12.82334 -12.75690 -12.47886 -12.15230 -12.08550 -12.02809 -11.91907 -11.83419 -11.80509 -11.46315 -11.29392 -11.17804 -11.06483 -10.96713 -10.91444 -10.63693 -10.28184 -9.78311 -9.52630 -9.32992 -9.28605 -9.12771 -8.85546 -8.79331 -8.44018 -6.17516 -4.24405 -0.05400 0.27977 1.67207 2.49043 3.03647 3.26735 3.30245 3.32266 3.53458 3.72971 3.79644 3.87167 4.01867 4.32614 4.45895 4.49795 4.74721 4.77483 4.84816 4.96944 5.07715 5.10163 5.14414 5.31660 5.50959 5.54923 5.64617 5.74220 5.78181 5.83051 5.90205 5.96983 6.02334 6.15078 6.23695 6.25594 6.32529 6.38607 6.47283 6.88177 6.97699 7.04458 7.17827 7.28140 7.51343 7.63004 7.75347 7.96736 8.17639 8.65579 8.91176 9.40783 10.89175 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.002506 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.720979 B =11171.674852 C =12110.694281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.047 0.953 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.353 6.353 14 C 0.458 3.542 15 O -0.518 6.518 16 C -0.079 4.079 17 H 0.112 0.888 18 C -0.141 4.141 19 C -0.055 4.055 20 C 0.120 3.880 21 C 0.086 3.914 22 N -0.425 5.425 23 C 0.068 3.932 24 C -0.082 4.082 25 C -0.104 4.104 26 C -0.101 4.101 27 C -0.082 4.082 28 C 0.086 3.914 29 N -0.422 5.422 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.266 0.734 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.176 0.824 42 H 0.138 0.862 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.018 11.785 -17.107 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.269 6.269 14 C 0.301 3.699 15 O -0.409 6.409 16 C -0.099 4.099 17 H 0.130 0.870 18 C -0.198 4.198 19 C -0.093 4.093 20 C -0.035 4.035 21 C -0.090 4.090 22 N -0.138 5.138 23 C -0.056 4.056 24 C -0.102 4.102 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.102 4.102 28 C -0.039 4.039 29 N -0.137 5.137 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.193 0.807 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.133 11.824 -16.760 23.831 hybrid contribution 0.879 -0.104 0.298 0.934 sum -11.254 11.720 -16.462 23.130 Atomic orbital electron populations 1.21859 0.98381 0.98942 1.00762 1.22010 0.92643 0.99384 1.03304 1.20662 0.94944 0.88762 0.78751 0.93541 1.21012 0.89768 1.38951 1.06214 0.91428 1.24877 0.99182 0.94792 0.95086 1.69880 1.35432 1.37831 1.09450 0.86351 0.83974 0.78479 0.77441 1.20008 1.21052 1.19963 1.86468 1.34143 1.62294 1.43991 1.23095 0.80873 0.76861 0.89063 1.90599 1.55627 1.58676 1.35957 1.20891 0.97243 0.98778 0.92956 0.86975 1.21746 1.03719 0.98165 0.96188 1.20487 0.96872 0.98512 0.93460 1.22542 0.91470 0.92932 0.96594 1.23974 0.95246 0.98078 0.91686 1.68698 1.31275 1.03909 1.09902 1.19616 0.92449 0.96061 0.97454 1.20793 1.00413 0.94739 0.94238 1.21001 0.94043 0.97341 0.99982 1.21017 0.96492 0.99333 0.95249 1.20873 0.99584 0.93714 0.95996 1.19631 0.93894 0.96980 0.93367 1.68544 1.31648 1.04152 1.09313 0.92814 0.94892 0.94882 0.87401 0.94042 0.92361 0.91966 0.92623 0.90627 0.88579 0.88029 0.80675 0.84453 0.84818 0.84730 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.56 37.16 0.32 -2.72 16 2 C -0.14 -3.32 5.49 -26.73 -0.15 -3.47 16 3 C 0.22 5.82 2.25 -27.88 -0.06 5.75 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.54 8.90 -34.44 -0.31 -14.85 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.98 11.29 55.43 0.63 -24.35 16 9 Si 0.91 21.04 29.54 -169.99 -5.02 16.01 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 O -0.35 -8.21 9.71 -39.25 -0.38 -8.59 16 14 C 0.46 9.13 5.71 36.01 0.21 9.33 16 15 O -0.52 -11.33 13.06 -18.74 -0.24 -11.58 16 16 C -0.08 -1.17 2.76 -91.77 -0.25 -1.42 16 17 H 0.11 1.68 7.81 -51.93 -0.41 1.27 16 18 C -0.14 -1.84 8.94 37.16 0.33 -1.51 16 19 C -0.05 -0.69 4.44 -27.88 -0.12 -0.81 16 20 C 0.12 1.43 5.17 -82.27 -0.43 1.01 16 21 C 0.09 0.92 10.83 -17.23 -0.19 0.73 16 22 N -0.42 -5.04 10.46 -10.80 -0.11 -5.15 16 23 C 0.07 0.79 6.59 -84.80 -0.56 0.23 16 24 C -0.08 -0.72 9.99 -39.48 -0.39 -1.12 16 25 C -0.10 -0.70 9.95 -39.93 -0.40 -1.10 16 26 C -0.10 -0.71 9.95 -39.93 -0.40 -1.11 16 27 C -0.08 -0.79 9.98 -39.48 -0.39 -1.18 16 28 C 0.09 1.04 6.59 -84.80 -0.56 0.48 16 29 N -0.42 -5.55 9.90 -7.06 -0.07 -5.62 16 30 H 0.05 1.21 7.80 -51.93 -0.40 0.80 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 33 H 0.11 2.88 5.95 -51.93 -0.31 2.57 16 34 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.65 7.38 -51.93 -0.38 0.27 16 38 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 39 H 0.10 1.05 7.87 -51.93 -0.41 0.64 16 40 H 0.10 1.36 7.96 -51.93 -0.41 0.94 16 41 H 0.18 1.31 7.94 -52.49 -0.42 0.90 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -31.94 373.47 -9.37 -41.31 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.35 Total: 2.47 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -3.44 Total: -10.12 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.44 Total: -35.13 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.63 Total: -20.17 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.94 -9.37 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816039097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.068 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds