Wall clock time and date at job start Tue Mar 31 2020 15:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34228 * 117.00100 * 89.99663 * 13 3 2 15 15 O 1.20817 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.47381 * 299.99866 * 16 14 13 18 18 C 1.52998 * 109.46940 * 60.00230 * 16 14 13 19 19 C 1.53003 * 109.46847 * 179.97438 * 16 14 13 20 20 C 1.50700 * 109.47142 * 175.00070 * 19 16 14 21 21 C 1.39673 * 119.64709 * 125.00274 * 20 19 16 22 22 N 1.31333 * 120.71061 * 180.02562 * 21 20 19 23 23 C 1.33748 * 119.71164 * 359.96932 * 22 21 20 24 24 C 1.40593 * 121.10646 * 180.02562 * 23 22 21 25 25 C 1.36058 * 119.71412 * 179.97438 * 24 23 22 26 26 C 1.39413 * 120.97145 * 0.02562 * 25 24 23 27 27 C 1.36060 * 120.96551 * 359.95566 * 26 25 24 28 28 C 1.40588 * 119.71666 * 0.04060 * 27 26 25 29 29 N 1.31337 * 119.64405 * 304.73338 * 20 19 16 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47473 * 60.00171 * 18 16 14 37 37 H 1.09007 * 109.46814 * 179.97438 * 18 16 14 38 38 H 1.09004 * 109.47075 * 299.99139 * 18 16 14 39 39 H 1.08994 * 109.47517 * 295.00429 * 19 16 14 40 40 H 1.09004 * 109.47088 * 55.00193 * 19 16 14 41 41 H 1.08001 * 119.64099 * 359.97438 * 21 20 19 42 42 H 1.08000 * 120.13881 * 359.93798 * 24 23 22 43 43 H 1.08004 * 119.51540 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.51371 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.14166 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2558 15 8 -0.2192 2.7369 -0.2654 16 6 0.0074 3.4227 -2.5083 17 1 0.7244 4.1970 -2.7808 18 6 -0.1030 2.4064 -3.6466 19 6 -1.3614 4.0592 -2.2590 20 6 -1.7714 4.8588 -3.4689 21 6 -2.9965 4.5978 -4.0868 22 7 -3.3743 5.2816 -5.1426 23 6 -2.5786 6.2388 -5.6320 24 6 -2.9541 6.9890 -6.7602 25 6 -2.1230 7.9565 -7.2339 26 6 -0.9003 8.2171 -6.6170 27 6 -0.5036 7.5118 -5.5232 28 6 -1.3355 6.5041 -5.0044 29 7 -0.9752 5.7972 -3.9276 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8293 -0.0605 2.9501 36 1 -0.8201 1.6320 -3.3741 37 1 -0.4400 2.9106 -4.5524 38 1 0.8720 1.9525 -3.8243 39 1 -2.0976 3.2771 -2.0739 40 1 -1.3039 4.7166 -1.3915 41 1 -3.6396 3.8249 -3.6927 42 1 -3.8979 6.7976 -7.2490 43 1 -2.4149 8.5311 -8.1006 44 1 -0.2586 8.9903 -7.0131 45 1 0.4463 7.7251 -5.0555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816039097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:49 Heat of formation + Delta-G solvation = -55.887495 kcal Electronic energy + Delta-G solvation = -27275.415264 eV Core-core repulsion = 23449.731507 eV Total energy + Delta-G solvation = -3825.683757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.50652 -41.45592 -38.83279 -37.79100 -36.39637 -35.52746 -35.19425 -33.31691 -31.96905 -31.52942 -29.33728 -28.47569 -26.34766 -25.65475 -24.97559 -23.73844 -23.22593 -21.97187 -20.83096 -19.61159 -19.11916 -18.74209 -18.51266 -17.46649 -17.20686 -17.04543 -16.54462 -16.15647 -15.87482 -15.47216 -15.32726 -14.94598 -14.79869 -14.73332 -14.31628 -14.13701 -13.56213 -13.46792 -13.32071 -13.11783 -13.09471 -12.94698 -12.81180 -12.78347 -12.71705 -12.65741 -12.63199 -12.51122 -12.15044 -12.12363 -12.10638 -11.72755 -11.40364 -11.10320 -10.80206 -10.50681 -10.13448 -9.86494 -9.55249 -8.26778 -6.43291 -0.78828 -0.47496 0.91460 1.39622 1.41750 1.44478 1.52436 1.79396 2.04610 2.41592 2.91039 2.98708 3.02629 3.14569 3.22934 3.60937 3.65462 3.85951 3.92159 4.01798 4.13958 4.21134 4.31899 4.32563 4.40786 4.42293 4.43895 4.59596 4.68302 4.72736 4.80031 4.87378 4.91674 4.93715 5.04346 5.13300 5.17851 5.20501 5.23812 5.25529 5.38667 5.43324 5.52680 5.70027 5.76645 6.01038 6.16922 6.24485 6.61349 6.69458 7.03093 7.28717 8.79538 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.002506 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.720979 B =11171.674852 C =12110.694281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.007 0.993 5 C -0.552 4.552 6 H 0.063 0.937 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.978 3.022 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.265 1.265 13 O -0.363 6.363 14 C 0.454 3.546 15 O -0.539 6.539 16 C -0.067 4.067 17 H 0.109 0.891 18 C -0.133 4.133 19 C -0.046 4.046 20 C 0.111 3.889 21 C 0.085 3.915 22 N -0.439 5.439 23 C 0.050 3.950 24 C -0.097 4.097 25 C -0.088 4.088 26 C -0.086 4.086 27 C -0.105 4.105 28 C 0.060 3.940 29 N -0.446 5.446 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.270 0.730 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.204 0.796 42 H 0.152 0.848 43 H 0.173 0.827 44 H 0.169 0.831 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.384 12.653 -19.538 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.081 0.919 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.801 3.199 10 H -0.195 1.195 11 H -0.201 1.201 12 H -0.189 1.189 13 O -0.279 6.279 14 C 0.298 3.702 15 O -0.430 6.430 16 C -0.086 4.086 17 H 0.127 0.873 18 C -0.190 4.190 19 C -0.084 4.084 20 C -0.044 4.044 21 C -0.091 4.091 22 N -0.152 5.152 23 C -0.074 4.074 24 C -0.116 4.116 25 C -0.108 4.108 26 C -0.105 4.105 27 C -0.125 4.125 28 C -0.064 4.064 29 N -0.162 5.162 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.221 0.779 42 H 0.169 0.831 43 H 0.190 0.810 44 H 0.187 0.813 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.519 12.700 -19.206 26.208 hybrid contribution 0.952 -0.222 0.972 1.379 sum -11.567 12.478 -18.233 24.939 Atomic orbital electron populations 1.21716 0.95968 1.00638 1.00360 1.21847 0.94770 0.97916 1.02180 1.20353 0.94344 0.89416 0.78721 0.97550 1.21311 0.90784 1.39963 1.06846 0.91893 1.25769 1.04085 0.93930 0.94400 1.70003 1.37402 1.37888 1.09790 0.85306 0.77941 0.78715 0.77902 1.19535 1.20140 1.18938 1.86463 1.36095 1.62986 1.42400 1.24105 0.79515 0.76069 0.90510 1.90585 1.55856 1.59275 1.37256 1.20933 0.98376 0.98584 0.90754 0.87298 1.21702 1.03513 0.97909 0.95906 1.20392 0.95779 0.98733 0.93529 1.22399 0.92239 0.93199 0.96580 1.24327 0.95003 0.98440 0.91291 1.68747 1.31588 1.04447 1.10408 1.20026 0.92430 0.96548 0.98424 1.21091 1.01603 0.95176 0.93758 1.21476 0.93003 0.96095 1.00197 1.21462 0.96774 0.98688 0.93614 1.21081 0.99809 0.94198 0.97392 1.19984 0.94904 0.97919 0.93577 1.68467 1.32663 1.04819 1.10212 0.94519 0.92064 0.93899 0.89750 0.93714 0.92047 0.90858 0.90981 0.91703 0.86803 0.89449 0.77891 0.83062 0.80992 0.81340 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.56 71.98 0.62 -4.92 16 2 C -0.13 -6.47 5.49 30.59 0.17 -6.31 16 3 C 0.22 12.28 2.25 29.85 0.07 12.35 16 4 H 0.01 0.41 7.16 -2.38 -0.02 0.39 16 5 C -0.55 -31.63 8.90 25.60 0.23 -31.40 16 6 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 7 C 0.02 1.00 5.29 84.66 0.45 1.45 16 8 N -0.91 -52.46 11.29 21.45 0.24 -52.22 16 9 Si 0.98 43.28 29.54 68.60 2.03 45.31 16 10 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 13 O -0.36 -17.42 9.71 -51.40 -0.50 -17.92 16 14 C 0.45 18.52 5.71 71.24 0.41 18.93 16 15 O -0.54 -24.28 13.06 21.99 0.29 -24.00 16 16 C -0.07 -1.99 2.76 -11.54 -0.03 -2.03 16 17 H 0.11 3.35 7.81 -2.39 -0.02 3.33 16 18 C -0.13 -3.37 8.94 71.98 0.64 -2.72 16 19 C -0.05 -1.15 4.44 29.85 0.13 -1.02 16 20 C 0.11 2.64 5.17 42.98 0.22 2.86 16 21 C 0.08 1.73 10.83 85.11 0.92 2.65 16 22 N -0.44 -10.03 10.46 -188.09 -1.97 -11.99 16 23 C 0.05 1.11 6.59 40.30 0.27 1.37 16 24 C -0.10 -1.50 9.99 22.34 0.22 -1.28 16 25 C -0.09 -0.88 9.95 22.05 0.22 -0.66 16 26 C -0.09 -0.96 9.95 22.05 0.22 -0.74 16 27 C -0.11 -1.92 9.98 22.34 0.22 -1.69 16 28 C 0.06 1.44 6.59 40.30 0.27 1.71 16 29 N -0.45 -11.88 9.90 -176.25 -1.74 -13.63 16 30 H 0.04 1.66 7.80 -2.39 -0.02 1.65 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.04 1.71 6.06 -2.38 -0.01 1.70 16 33 H 0.08 4.64 5.95 -2.39 -0.01 4.63 16 34 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.61 7.38 -2.38 -0.02 1.59 16 38 H 0.06 1.78 8.11 -2.38 -0.02 1.77 16 39 H 0.11 2.39 7.87 -2.39 -0.02 2.37 16 40 H 0.09 2.42 7.96 -2.38 -0.02 2.40 16 41 H 0.20 2.69 7.94 -2.91 -0.02 2.67 16 42 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 43 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 44 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 45 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -71.98 373.47 4.58 -67.40 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.99 Total: 18.49 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 5.24 Total: -11.45 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -3.47 Total: -77.84 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.21 Total: -41.92 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -71.98 4.58 -67.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816039097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.517 kcal (2) G-P(sol) polarization free energy of solvation -71.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds