Wall clock time and date at job start Tue Mar 31 2020 15:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47378 * 2 1 4 4 H 1.09003 * 109.47177 * 55.00441 * 3 2 1 5 5 C 1.50702 * 109.47230 * 174.99671 * 3 2 1 6 6 H 1.08007 * 119.99843 * 120.00390 * 5 3 2 7 7 C 1.37871 * 120.00541 * 300.00530 * 5 3 2 8 8 N 1.31514 * 120.00518 * 179.97438 * 7 5 3 9 9 Si 1.86812 * 119.99679 * 359.97438 * 7 5 3 10 10 H 1.48508 * 109.46711 * 90.00174 * 9 7 5 11 11 H 1.48491 * 109.47135 * 210.00297 * 9 7 5 12 12 H 1.48499 * 109.46784 * 330.00588 * 9 7 5 13 13 O 1.45195 * 109.47663 * 294.99958 * 3 2 1 14 14 C 1.34231 * 117.00102 * 89.99280 * 13 3 2 15 15 O 1.20827 * 119.99585 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00242 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.46959 * 60.00359 * 16 14 13 18 18 C 1.53000 * 109.47083 * 300.00144 * 16 14 13 19 19 C 1.52997 * 109.47078 * 180.02562 * 16 14 13 20 20 C 1.50705 * 109.47390 * 184.99841 * 19 16 14 21 21 C 1.39674 * 119.64541 * 124.72291 * 20 19 16 22 22 N 1.31329 * 120.70858 * 179.74831 * 21 20 19 23 23 C 1.33746 * 119.70899 * 0.52970 * 22 21 20 24 24 C 1.40591 * 121.09866 * 179.73349 * 23 22 21 25 25 C 1.36071 * 119.71336 * 180.02562 * 24 23 22 26 26 C 1.39401 * 120.96621 * 359.97438 * 25 24 23 27 27 C 1.36062 * 120.97487 * 359.97438 * 26 25 24 28 28 C 1.40586 * 119.71247 * 0.02562 * 27 26 25 29 29 N 1.31336 * 119.64493 * 305.00773 * 20 19 16 30 30 H 1.08994 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47338 * 300.00131 * 1 2 3 32 32 H 1.09002 * 109.46706 * 60.00209 * 1 2 3 33 33 H 1.09001 * 109.47126 * 239.99761 * 2 1 3 34 34 H 1.08999 * 109.47248 * 120.00305 * 2 1 3 35 35 H 0.96996 * 119.99958 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47194 * 179.97438 * 18 16 14 37 37 H 1.08992 * 109.47399 * 299.99938 * 18 16 14 38 38 H 1.09004 * 109.46724 * 60.00424 * 18 16 14 39 39 H 1.09001 * 109.47630 * 305.00104 * 19 16 14 40 40 H 1.09004 * 109.47346 * 65.00234 * 19 16 14 41 41 H 1.08006 * 119.64631 * 0.02562 * 21 20 19 42 42 H 1.07990 * 120.14364 * 0.04741 * 24 23 22 43 43 H 1.08001 * 119.51260 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.51295 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.14489 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8782 1.2279 8 7 5.4540 0.8793 1.3358 9 14 3.0963 0.1098 2.5707 10 1 2.8744 -1.3263 2.2644 11 1 3.7940 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 8 1.6560 2.0917 -1.2406 14 6 0.4728 2.7254 -1.2559 15 8 -0.2188 2.7376 -0.2653 16 6 0.0071 3.4217 -2.5087 17 1 -0.0718 2.6971 -3.3191 18 6 1.0135 4.5085 -2.8923 19 6 -1.3610 4.0595 -2.2590 20 6 -1.8821 4.6498 -3.5440 21 6 -3.1361 4.2637 -4.0231 22 7 -3.6126 4.7685 -5.1379 23 6 -2.8860 5.6540 -5.8284 24 6 -3.3653 6.2086 -7.0281 25 6 -2.6021 7.1067 -7.7082 26 6 -1.3483 7.4879 -7.2329 27 6 -0.8521 6.9732 -6.0752 28 6 -1.6114 6.0425 -5.3446 29 7 -1.1499 5.5174 -4.2043 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 5.8770 0.4815 2.1128 36 1 0.6769 5.0118 -3.7986 37 1 1.0924 5.2330 -2.0819 38 1 1.9884 4.0544 -3.0700 39 1 -2.0558 3.3003 -1.8999 40 1 -1.2641 4.8463 -1.5109 41 1 -3.7220 3.5457 -3.4684 42 1 -4.3350 5.9232 -7.4081 43 1 -2.9736 7.5310 -8.6292 44 1 -0.7621 8.2024 -7.7918 45 1 0.1208 7.2783 -5.7191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816039098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:56 Heat of formation + Delta-G solvation = -22.034274 kcal Electronic energy + Delta-G solvation = -27385.556528 eV Core-core repulsion = 23561.340758 eV Total energy + Delta-G solvation = -3824.215771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77405 -39.99899 -38.10217 -36.42779 -35.48260 -34.17365 -33.53165 -31.93044 -31.19131 -30.82783 -27.94438 -27.64245 -25.03663 -24.64655 -23.20846 -22.56991 -22.48238 -20.69680 -19.43487 -18.83956 -18.46784 -17.44941 -16.76899 -16.48946 -16.07584 -15.61422 -15.42269 -15.19156 -14.75885 -14.68995 -14.19363 -13.91651 -13.66634 -13.42002 -13.16508 -12.79450 -12.53613 -12.41805 -12.15616 -12.13054 -12.06727 -11.97449 -11.82307 -11.70753 -11.45355 -11.25558 -11.18637 -11.10488 -10.95951 -10.74849 -10.04032 -9.87442 -9.61227 -9.51209 -9.19914 -9.14188 -9.05882 -8.89441 -8.65535 -6.22879 -4.25017 -0.10108 0.23673 1.62514 2.44584 2.85228 3.17817 3.30342 3.32518 3.38361 3.67273 3.73232 3.82578 3.97283 4.26015 4.40686 4.46181 4.68463 4.75097 4.80960 4.87811 5.03233 5.06409 5.09572 5.29142 5.49285 5.51807 5.55177 5.69631 5.75021 5.79023 5.80906 5.90358 5.90619 5.97885 5.98648 6.17499 6.19981 6.34211 6.44426 6.55119 6.58917 6.67716 6.72532 6.99534 7.06945 7.37923 7.45758 7.54419 8.23789 8.61339 8.85155 9.34352 10.89176 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.002522 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.575177 B =11098.694724 C =11830.555110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.196 3.804 4 H 0.046 0.954 5 C -0.524 4.524 6 H 0.087 0.913 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.260 1.260 13 O -0.337 6.337 14 C 0.458 3.542 15 O -0.520 6.520 16 C -0.075 4.075 17 H 0.100 0.900 18 C -0.154 4.154 19 C -0.055 4.055 20 C 0.115 3.885 21 C 0.087 3.913 22 N -0.425 5.425 23 C 0.070 3.930 24 C -0.083 4.083 25 C -0.103 4.103 26 C -0.100 4.100 27 C -0.082 4.082 28 C 0.082 3.918 29 N -0.414 5.414 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.269 0.731 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.176 0.824 42 H 0.138 0.862 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.452 10.785 -16.406 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.142 3.858 4 H 0.064 0.936 5 C -0.562 4.562 6 H 0.105 0.895 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.706 3.294 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.185 1.185 13 O -0.252 6.252 14 C 0.301 3.699 15 O -0.411 6.411 16 C -0.095 4.095 17 H 0.118 0.882 18 C -0.211 4.211 19 C -0.094 4.094 20 C -0.040 4.040 21 C -0.089 4.089 22 N -0.138 5.138 23 C -0.054 4.054 24 C -0.102 4.102 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.102 4.102 28 C -0.042 4.042 29 N -0.129 5.129 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.193 0.807 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.435 10.852 -16.163 26.134 hybrid contribution -0.440 -0.677 0.953 1.249 sum -17.875 10.175 -15.210 25.581 Atomic orbital electron populations 1.21890 0.96991 0.99962 1.01753 1.22360 0.94369 0.99673 1.02187 1.20963 0.96300 0.88044 0.80446 0.93599 1.20803 0.87790 1.39778 1.07816 0.89519 1.24739 0.94940 0.95307 0.97384 1.69836 1.08491 1.44394 1.29798 0.87001 0.81035 0.80109 0.81294 1.19963 1.21719 1.18483 1.86499 1.34344 1.62141 1.42257 1.23300 0.80580 0.76494 0.89513 1.90597 1.55664 1.58815 1.35976 1.20821 0.95372 0.98497 0.94811 0.88197 1.22080 0.98093 0.97167 1.03764 1.20497 0.96098 1.00999 0.91775 1.22539 0.91944 0.92913 0.96601 1.23964 0.94225 0.97951 0.92754 1.68702 1.32710 1.06672 1.05721 1.19619 0.92603 0.96520 0.96683 1.20802 1.00503 0.96243 0.92673 1.21009 0.94340 0.96894 1.00034 1.21025 0.95839 0.99386 0.95785 1.20868 1.00043 0.95047 0.94209 1.19697 0.93346 0.97673 0.93473 1.68619 1.31905 1.07274 1.05075 0.93985 0.92508 0.93601 0.91277 0.91837 0.92085 0.88645 0.92355 0.91446 0.88428 0.88167 0.80661 0.84453 0.84800 0.84701 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.57 37.16 0.32 -2.54 16 2 C -0.15 -3.33 5.15 -26.74 -0.14 -3.46 16 3 C 0.20 4.87 1.84 -27.89 -0.05 4.82 16 4 H 0.05 1.21 6.21 -51.93 -0.32 0.88 16 5 C -0.52 -14.94 9.48 -34.44 -0.33 -15.27 16 6 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 7 C 0.08 2.27 5.45 -17.82 -0.10 2.18 16 8 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 9 Si 0.88 21.56 24.41 -169.99 -4.15 17.41 16 10 H -0.27 -6.44 6.83 56.52 0.39 -6.06 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 13 O -0.34 -7.52 9.71 -39.26 -0.38 -7.91 16 14 C 0.46 8.61 5.71 36.01 0.21 8.81 16 15 O -0.52 -10.57 13.06 -18.75 -0.24 -10.81 16 16 C -0.08 -1.05 2.82 -91.77 -0.26 -1.31 16 17 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.15 -2.13 8.74 37.16 0.32 -1.81 16 19 C -0.06 -0.64 4.49 -27.88 -0.13 -0.77 16 20 C 0.12 1.28 6.19 -82.27 -0.51 0.77 16 21 C 0.09 0.87 10.83 -17.23 -0.19 0.69 16 22 N -0.42 -4.84 10.46 -10.80 -0.11 -4.96 16 23 C 0.07 0.77 6.59 -84.80 -0.56 0.21 16 24 C -0.08 -0.69 9.99 -39.47 -0.39 -1.09 16 25 C -0.10 -0.65 9.95 -39.93 -0.40 -1.05 16 26 C -0.10 -0.66 9.95 -39.93 -0.40 -1.05 16 27 C -0.08 -0.72 9.99 -39.48 -0.39 -1.12 16 28 C 0.08 0.93 6.59 -84.80 -0.56 0.37 16 29 N -0.41 -4.97 7.13 -7.06 -0.05 -5.02 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.13 7.80 -51.93 -0.40 0.72 16 32 H 0.04 0.84 6.06 -51.93 -0.31 0.52 16 33 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.48 3.22 -51.93 -0.17 1.31 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.10 1.21 5.19 -51.93 -0.27 0.95 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 39 H 0.10 1.00 7.68 -51.93 -0.40 0.60 16 40 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.18 1.22 7.94 -52.48 -0.42 0.81 16 42 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 44 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -33.09 363.02 -8.37 -41.45 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.13 Total: 1.89 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.54 Total: -11.61 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.61 Total: -35.89 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.63 Total: -18.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.15 Total: 17.41 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.09 -8.37 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816039098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.420 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds