Wall clock time and date at job start Tue Mar 31 2020 15:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47378 * 2 1 4 4 H 1.09003 * 109.47177 * 55.00441 * 3 2 1 5 5 C 1.50702 * 109.47230 * 174.99671 * 3 2 1 6 6 H 1.08007 * 119.99843 * 120.00390 * 5 3 2 7 7 C 1.37871 * 120.00541 * 300.00530 * 5 3 2 8 8 N 1.31514 * 120.00518 * 179.97438 * 7 5 3 9 9 Si 1.86812 * 119.99679 * 359.97438 * 7 5 3 10 10 H 1.48508 * 109.46711 * 90.00174 * 9 7 5 11 11 H 1.48491 * 109.47135 * 210.00297 * 9 7 5 12 12 H 1.48499 * 109.46784 * 330.00588 * 9 7 5 13 13 O 1.45195 * 109.47663 * 294.99958 * 3 2 1 14 14 C 1.34231 * 117.00102 * 89.99280 * 13 3 2 15 15 O 1.20827 * 119.99585 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00242 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.46959 * 60.00359 * 16 14 13 18 18 C 1.53000 * 109.47083 * 300.00144 * 16 14 13 19 19 C 1.52997 * 109.47078 * 180.02562 * 16 14 13 20 20 C 1.50705 * 109.47390 * 184.99841 * 19 16 14 21 21 C 1.39674 * 119.64541 * 124.72291 * 20 19 16 22 22 N 1.31329 * 120.70858 * 179.74831 * 21 20 19 23 23 C 1.33746 * 119.70899 * 0.52970 * 22 21 20 24 24 C 1.40591 * 121.09866 * 179.73349 * 23 22 21 25 25 C 1.36071 * 119.71336 * 180.02562 * 24 23 22 26 26 C 1.39401 * 120.96621 * 359.97438 * 25 24 23 27 27 C 1.36062 * 120.97487 * 359.97438 * 26 25 24 28 28 C 1.40586 * 119.71247 * 0.02562 * 27 26 25 29 29 N 1.31336 * 119.64493 * 305.00773 * 20 19 16 30 30 H 1.08994 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47338 * 300.00131 * 1 2 3 32 32 H 1.09002 * 109.46706 * 60.00209 * 1 2 3 33 33 H 1.09001 * 109.47126 * 239.99761 * 2 1 3 34 34 H 1.08999 * 109.47248 * 120.00305 * 2 1 3 35 35 H 0.96996 * 119.99958 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47194 * 179.97438 * 18 16 14 37 37 H 1.08992 * 109.47399 * 299.99938 * 18 16 14 38 38 H 1.09004 * 109.46724 * 60.00424 * 18 16 14 39 39 H 1.09001 * 109.47630 * 305.00104 * 19 16 14 40 40 H 1.09004 * 109.47346 * 65.00234 * 19 16 14 41 41 H 1.08006 * 119.64631 * 0.02562 * 21 20 19 42 42 H 1.07990 * 120.14364 * 0.04741 * 24 23 22 43 43 H 1.08001 * 119.51260 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.51295 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.14489 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8782 1.2279 8 7 5.4540 0.8793 1.3358 9 14 3.0963 0.1098 2.5707 10 1 2.8744 -1.3263 2.2644 11 1 3.7940 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 8 1.6560 2.0917 -1.2406 14 6 0.4728 2.7254 -1.2559 15 8 -0.2188 2.7376 -0.2653 16 6 0.0071 3.4217 -2.5087 17 1 -0.0718 2.6971 -3.3191 18 6 1.0135 4.5085 -2.8923 19 6 -1.3610 4.0595 -2.2590 20 6 -1.8821 4.6498 -3.5440 21 6 -3.1361 4.2637 -4.0231 22 7 -3.6126 4.7685 -5.1379 23 6 -2.8860 5.6540 -5.8284 24 6 -3.3653 6.2086 -7.0281 25 6 -2.6021 7.1067 -7.7082 26 6 -1.3483 7.4879 -7.2329 27 6 -0.8521 6.9732 -6.0752 28 6 -1.6114 6.0425 -5.3446 29 7 -1.1499 5.5174 -4.2043 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 5.8770 0.4815 2.1128 36 1 0.6769 5.0118 -3.7986 37 1 1.0924 5.2330 -2.0819 38 1 1.9884 4.0544 -3.0700 39 1 -2.0558 3.3003 -1.8999 40 1 -1.2641 4.8463 -1.5109 41 1 -3.7220 3.5457 -3.4684 42 1 -4.3350 5.9232 -7.4081 43 1 -2.9736 7.5310 -8.6292 44 1 -0.7621 8.2024 -7.7918 45 1 0.1208 7.2783 -5.7191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816039098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:54 Heat of formation + Delta-G solvation = -41.650220 kcal Electronic energy + Delta-G solvation = -27386.407140 eV Core-core repulsion = 23561.340758 eV Total energy + Delta-G solvation = -3825.066382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.52106 -41.56702 -38.86069 -37.92241 -36.50540 -35.54564 -35.04283 -33.88551 -32.01463 -31.48576 -29.78461 -28.61224 -25.98521 -25.73110 -24.74104 -23.84690 -23.20022 -22.30121 -20.97981 -19.53069 -19.20104 -19.15832 -18.42781 -17.93226 -17.24244 -17.02629 -16.60653 -16.07903 -15.90755 -15.44095 -15.32978 -15.15213 -14.89811 -14.80519 -14.39151 -14.08769 -13.97850 -13.78379 -13.67640 -13.34361 -13.15849 -13.08242 -12.84013 -12.72305 -12.68737 -12.63079 -12.54641 -12.22584 -12.16870 -12.06566 -12.00152 -11.54623 -11.49406 -11.17163 -11.07519 -10.72722 -10.01954 -9.85963 -9.54026 -8.44697 -6.53123 -0.78451 -0.46474 0.92013 1.22667 1.30462 1.32317 1.40354 1.77534 1.98682 2.19333 2.87424 2.89763 2.99345 3.15461 3.24063 3.60438 3.65385 3.85883 3.91546 3.99943 4.09915 4.12078 4.19958 4.22276 4.24169 4.33222 4.39313 4.43058 4.60420 4.72895 4.77830 4.92080 4.94578 4.95878 4.97904 5.04239 5.05050 5.07816 5.19862 5.21666 5.34119 5.38142 5.39841 5.46784 5.71451 5.78267 6.17242 6.24839 6.50973 6.69517 6.92927 7.12608 8.71362 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.002522 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.575177 B =11098.694724 C =11830.555110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.147 4.147 3 C 0.200 3.800 4 H 0.031 0.969 5 C -0.540 4.540 6 H 0.044 0.956 7 C 0.029 3.971 8 N -0.932 5.932 9 Si 0.939 3.061 10 H -0.251 1.251 11 H -0.285 1.285 12 H -0.253 1.253 13 O -0.354 6.354 14 C 0.455 3.545 15 O -0.533 6.533 16 C -0.066 4.066 17 H 0.117 0.883 18 C -0.148 4.148 19 C -0.045 4.045 20 C 0.106 3.894 21 C 0.085 3.915 22 N -0.442 5.442 23 C 0.050 3.950 24 C -0.099 4.099 25 C -0.088 4.088 26 C -0.088 4.088 27 C -0.103 4.103 28 C 0.058 3.942 29 N -0.432 5.432 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.275 0.725 36 H 0.110 0.890 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.204 0.796 42 H 0.150 0.850 43 H 0.171 0.829 44 H 0.168 0.832 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.105 10.827 -17.694 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.185 4.185 3 C 0.146 3.854 4 H 0.049 0.951 5 C -0.577 4.577 6 H 0.062 0.938 7 C -0.171 4.171 8 N -0.570 5.570 9 Si 0.764 3.236 10 H -0.176 1.176 11 H -0.212 1.212 12 H -0.177 1.177 13 O -0.270 6.270 14 C 0.299 3.701 15 O -0.423 6.423 16 C -0.085 4.085 17 H 0.135 0.865 18 C -0.205 4.205 19 C -0.083 4.083 20 C -0.049 4.049 21 C -0.090 4.090 22 N -0.155 5.155 23 C -0.074 4.074 24 C -0.118 4.118 25 C -0.108 4.108 26 C -0.107 4.107 27 C -0.122 4.122 28 C -0.066 4.066 29 N -0.148 5.148 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.133 0.867 40 H 0.110 0.890 41 H 0.221 0.779 42 H 0.167 0.833 43 H 0.188 0.812 44 H 0.186 0.814 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.105 10.904 -17.472 28.782 hybrid contribution 0.433 -0.505 1.169 1.345 sum -19.673 10.399 -16.303 27.585 Atomic orbital electron populations 1.21812 0.94165 1.02088 1.01686 1.22266 0.96856 0.97344 1.02006 1.20639 0.93774 0.89863 0.81111 0.95138 1.21006 0.89944 1.39692 1.07086 0.93815 1.25587 0.96107 0.95628 0.99745 1.69966 1.10428 1.45595 1.30994 0.85993 0.79374 0.80276 0.77970 1.17594 1.21169 1.17710 1.86495 1.36532 1.62943 1.40985 1.24193 0.79201 0.75729 0.90928 1.90580 1.55683 1.59122 1.36930 1.20911 0.96545 0.98392 0.92681 0.86511 1.22042 0.97361 0.96930 1.04152 1.20404 0.94762 1.01054 0.92128 1.22433 0.92629 0.93415 0.96443 1.24331 0.93992 0.98101 0.92599 1.68742 1.33132 1.07318 1.06319 1.20019 0.92754 0.96888 0.97695 1.21082 1.01534 0.96998 0.92213 1.21466 0.93598 0.95178 1.00529 1.21459 0.95960 0.98620 0.94677 1.21090 1.00436 0.95425 0.95246 1.20026 0.94137 0.98727 0.93677 1.68493 1.32802 1.07718 1.05759 0.90745 0.93235 0.93014 0.91053 0.92405 0.91603 0.87174 0.93159 0.93119 0.86724 0.88983 0.77941 0.83268 0.81182 0.81416 0.83695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 8.57 71.98 0.62 -4.41 16 2 C -0.15 -6.42 5.15 30.59 0.16 -6.27 16 3 C 0.20 10.08 1.84 29.85 0.05 10.13 16 4 H 0.03 1.63 6.21 -2.39 -0.01 1.61 16 5 C -0.54 -31.98 9.48 25.60 0.24 -31.73 16 6 H 0.04 2.87 8.06 -2.91 -0.02 2.85 16 7 C 0.03 1.69 5.45 84.65 0.46 2.15 16 8 N -0.93 -57.57 13.96 21.45 0.30 -57.27 16 9 Si 0.94 44.36 24.41 68.60 1.67 46.04 16 10 H -0.25 -10.92 6.83 99.48 0.68 -10.24 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.25 -11.58 6.53 99.48 0.65 -10.93 16 13 O -0.35 -16.09 9.71 -51.42 -0.50 -16.59 16 14 C 0.46 17.05 5.71 71.24 0.41 17.46 16 15 O -0.53 -21.32 13.06 21.96 0.29 -21.03 16 16 C -0.07 -1.81 2.82 -11.54 -0.03 -1.85 16 17 H 0.12 2.86 8.14 -2.39 -0.02 2.85 16 18 C -0.15 -4.18 8.74 71.98 0.63 -3.55 16 19 C -0.05 -1.01 4.49 29.85 0.13 -0.87 16 20 C 0.11 2.28 6.19 42.98 0.27 2.55 16 21 C 0.08 1.62 10.83 85.11 0.92 2.54 16 22 N -0.44 -9.67 10.46 -188.09 -1.97 -11.64 16 23 C 0.05 1.06 6.59 40.30 0.27 1.33 16 24 C -0.10 -1.46 9.99 22.34 0.22 -1.24 16 25 C -0.09 -0.83 9.95 22.05 0.22 -0.61 16 26 C -0.09 -0.89 9.95 22.04 0.22 -0.67 16 27 C -0.10 -1.68 9.99 22.34 0.22 -1.46 16 28 C 0.06 1.28 6.59 40.30 0.27 1.55 16 29 N -0.43 -10.27 7.13 -176.24 -1.26 -11.53 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 1.84 7.80 -2.39 -0.02 1.82 16 32 H 0.05 1.77 6.06 -2.39 -0.01 1.75 16 33 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.06 2.57 3.22 -2.39 -0.01 2.57 16 35 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 36 H 0.11 2.83 5.19 -2.39 -0.01 2.82 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.58 8.11 -2.39 -0.02 1.56 16 39 H 0.11 2.14 7.68 -2.39 -0.02 2.12 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.20 2.43 7.94 -2.91 -0.02 2.40 16 42 H 0.15 1.74 8.06 -2.92 -0.02 1.72 16 43 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16 44 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 45 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -74.56 363.02 4.73 -69.82 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.92 Total: 17.17 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 5.27 Total: -14.96 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -2.93 Total: -80.44 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.21 Total: -37.63 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.67 Total: 46.04 kcal Total: -74.56 4.73 -69.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816039098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.172 kcal (2) G-P(sol) polarization free energy of solvation -74.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds