Wall clock time and date at job start Tue Mar 31 2020 15:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34225 * 116.99941 * 270.00274 * 13 3 2 15 15 O 1.20837 * 119.99963 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00256 * 179.97438 * 14 13 3 17 17 H 1.09006 * 109.46931 * 60.00018 * 16 14 13 18 18 C 1.53001 * 109.46936 * 300.00308 * 16 14 13 19 19 C 1.52997 * 109.47261 * 180.02562 * 16 14 13 20 20 C 1.50703 * 109.46942 * 185.00509 * 19 16 14 21 21 C 1.39674 * 119.64682 * 124.72541 * 20 19 16 22 22 N 1.31343 * 120.70735 * 179.74071 * 21 20 19 23 23 C 1.33742 * 119.70607 * 0.52683 * 22 21 20 24 24 C 1.40589 * 121.09861 * 179.73505 * 23 22 21 25 25 C 1.36061 * 119.71869 * 180.02562 * 24 23 22 26 26 C 1.39407 * 120.96642 * 0.02562 * 25 24 23 27 27 C 1.36068 * 120.97141 * 359.96715 * 26 25 24 28 28 C 1.40592 * 119.71198 * 0.02562 * 27 26 25 29 29 N 1.31336 * 119.63893 * 304.99101 * 20 19 16 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47320 * 59.99749 * 18 16 14 37 37 H 1.09005 * 109.46916 * 179.97438 * 18 16 14 38 38 H 1.09003 * 109.47134 * 299.99097 * 18 16 14 39 39 H 1.09002 * 109.47231 * 304.99694 * 19 16 14 40 40 H 1.08998 * 109.47682 * 65.00060 * 19 16 14 41 41 H 1.07997 * 119.64564 * 359.97438 * 21 20 19 42 42 H 1.07995 * 120.13998 * 0.04434 * 24 23 22 43 43 H 1.07996 * 119.51949 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.51368 * 179.97438 * 26 25 24 45 45 H 1.07990 * 120.14488 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 8 1.6560 2.0916 1.2408 14 6 0.4728 2.7254 1.2561 15 8 -0.2188 2.7377 0.2653 16 6 0.0071 3.4216 2.5088 17 1 0.7241 4.1958 2.7822 18 6 -0.1037 2.4045 3.6464 19 6 -1.3616 4.0584 2.2596 20 6 -1.7719 4.8571 3.4699 21 6 -2.1045 6.2062 3.3271 22 7 -2.4697 6.9206 4.3669 23 6 -2.5141 6.3541 5.5777 24 6 -2.8955 7.0928 6.7114 25 6 -2.9303 6.4884 7.9299 26 6 -2.5922 5.1436 8.0735 27 6 -2.2184 4.3970 6.9990 28 6 -2.1705 4.9865 5.7236 29 7 -1.8078 4.2785 4.6483 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8292 -0.0604 -2.9503 36 1 0.8711 1.9504 3.8240 37 1 -0.4402 2.9081 4.5526 38 1 -0.8208 1.6303 3.3730 39 1 -1.3037 4.7165 1.3926 40 1 -2.0978 3.2764 2.0736 41 1 -2.0644 6.6658 2.3506 42 1 -3.1601 8.1354 6.6155 43 1 -3.2242 7.0587 8.7986 44 1 -2.6276 4.6876 9.0518 45 1 -1.9596 3.3562 7.1255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816039099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:03 Heat of formation + Delta-G solvation = -31.809590 kcal Electronic energy + Delta-G solvation = -27321.943597 eV Core-core repulsion = 23497.303936 eV Total energy + Delta-G solvation = -3824.639660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73592 -39.77492 -38.04990 -36.21063 -35.37294 -34.08064 -33.44476 -31.40862 -31.10607 -30.79137 -27.78245 -27.19824 -25.00044 -24.56529 -23.35851 -22.55609 -22.44308 -20.24999 -19.19027 -18.80501 -18.42707 -17.21840 -16.69062 -16.42156 -15.77456 -15.43635 -15.26587 -15.09999 -14.72125 -14.45564 -14.20875 -13.97212 -13.46355 -13.27299 -12.83148 -12.77583 -12.57023 -12.12384 -12.11405 -12.08552 -11.95393 -11.79195 -11.44872 -11.36941 -11.16849 -11.12615 -11.02181 -10.97080 -10.87785 -10.61347 -10.26416 -9.77444 -9.58096 -9.34134 -9.16140 -9.08027 -8.86906 -8.77944 -8.44551 -6.17920 -4.24647 -0.07145 0.27103 1.65429 2.47631 3.04960 3.23536 3.30409 3.34964 3.52858 3.71807 3.80412 3.86567 4.01225 4.32412 4.45346 4.50862 4.73893 4.79413 4.84972 4.94825 5.07101 5.13771 5.16169 5.38618 5.52864 5.54389 5.71844 5.77002 5.84678 5.86548 5.93919 6.00097 6.20766 6.21739 6.26707 6.31288 6.36886 6.47377 6.62048 6.89799 6.99026 7.03180 7.18938 7.29273 7.49454 7.63421 7.75766 7.97198 8.17850 8.66212 8.91956 9.40702 10.88859 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.002392 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.885569 B =11701.252505 C =11824.306663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.353 6.353 14 C 0.458 3.542 15 O -0.520 6.520 16 C -0.077 4.077 17 H 0.099 0.901 18 C -0.152 4.152 19 C -0.055 4.055 20 C 0.117 3.883 21 C 0.087 3.913 22 N -0.425 5.425 23 C 0.069 3.931 24 C -0.082 4.082 25 C -0.104 4.104 26 C -0.101 4.101 27 C -0.083 4.083 28 C 0.082 3.918 29 N -0.415 5.415 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.108 0.892 35 H 0.265 0.735 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.177 0.823 42 H 0.138 0.862 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 10.298 18.111 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.269 6.269 14 C 0.301 3.699 15 O -0.410 6.410 16 C -0.097 4.097 17 H 0.117 0.883 18 C -0.209 4.209 19 C -0.094 4.094 20 C -0.038 4.038 21 C -0.088 4.088 22 N -0.138 5.138 23 C -0.055 4.055 24 C -0.102 4.102 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.102 4.102 28 C -0.042 4.042 29 N -0.130 5.130 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.194 0.806 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.234 10.204 17.841 24.445 hybrid contribution 0.919 -0.098 -0.398 1.006 sum -12.315 10.106 17.443 23.623 Atomic orbital electron populations 1.21857 0.98367 0.98949 1.00775 1.22003 0.92652 0.99377 1.03284 1.20671 0.94960 0.88800 0.78758 0.93545 1.21089 0.89772 1.38765 1.06155 0.91345 1.24887 0.99185 0.94811 0.95109 1.69903 1.35245 1.37971 1.09457 0.86250 0.84008 0.77875 0.78194 1.19504 1.20725 1.20776 1.86471 1.34135 1.62290 1.43960 1.23147 0.80829 0.76938 0.89027 1.90602 1.55577 1.58847 1.35972 1.20819 0.96409 0.98977 0.93468 0.88305 1.22061 1.02606 0.98122 0.98116 1.20497 0.96771 0.99654 0.92436 1.22576 0.94103 0.93149 0.94011 1.23989 0.94316 0.91615 0.98905 1.68711 1.10003 1.36740 0.98365 1.19620 1.00390 0.92410 0.93055 1.20801 0.98603 1.00269 0.90479 1.20998 0.98783 0.95081 0.97513 1.21016 0.97815 0.94085 0.99159 1.20855 0.98747 1.00857 0.89756 1.19700 0.98737 0.91476 0.94294 1.68623 1.10189 1.36070 0.98126 0.92855 0.94829 0.94910 0.94036 0.87422 0.92476 0.91727 0.88737 0.92559 0.88346 0.88265 0.80584 0.84460 0.84831 0.84753 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.57 37.16 0.32 -2.79 16 2 C -0.14 -3.35 5.49 -26.74 -0.15 -3.50 16 3 C 0.22 5.82 2.25 -27.89 -0.06 5.76 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.51 8.90 -34.44 -0.31 -14.81 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -25.00 11.30 55.43 0.63 -24.38 16 9 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 O -0.35 -8.26 9.71 -39.24 -0.38 -8.64 16 14 C 0.46 9.16 5.71 36.01 0.21 9.37 16 15 O -0.52 -11.38 13.06 -18.76 -0.25 -11.63 16 16 C -0.08 -1.14 2.82 -91.77 -0.26 -1.40 16 17 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 18 C -0.15 -2.13 8.74 37.16 0.32 -1.81 16 19 C -0.06 -0.68 4.49 -27.88 -0.13 -0.81 16 20 C 0.12 1.37 6.19 -82.27 -0.51 0.86 16 21 C 0.09 0.93 10.83 -17.22 -0.19 0.75 16 22 N -0.42 -5.05 10.46 -10.80 -0.11 -5.16 16 23 C 0.07 0.79 6.59 -84.80 -0.56 0.23 16 24 C -0.08 -0.71 9.98 -39.48 -0.39 -1.11 16 25 C -0.10 -0.68 9.95 -39.93 -0.40 -1.08 16 26 C -0.10 -0.67 9.95 -39.93 -0.40 -1.07 16 27 C -0.08 -0.74 9.99 -39.47 -0.39 -1.14 16 28 C 0.08 0.95 6.59 -84.79 -0.56 0.39 16 29 N -0.42 -5.14 7.13 -7.06 -0.05 -5.19 16 30 H 0.05 1.22 7.80 -51.93 -0.40 0.81 16 31 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 37 H 0.09 1.22 5.19 -51.93 -0.27 0.95 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.12 7.68 -51.93 -0.40 0.72 16 40 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.18 1.36 7.94 -52.49 -0.42 0.94 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 44 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -31.93 369.79 -9.41 -41.34 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.26 Total: 2.63 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -3.54 Total: -10.55 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.46 Total: -34.72 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.63 Total: -20.27 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.93 -9.41 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816039099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.525 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds