Wall clock time and date at job start Tue Mar 31 2020 15:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34225 * 116.99941 * 270.00274 * 13 3 2 15 15 O 1.20837 * 119.99963 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00256 * 179.97438 * 14 13 3 17 17 H 1.09006 * 109.46931 * 60.00018 * 16 14 13 18 18 C 1.53001 * 109.46936 * 300.00308 * 16 14 13 19 19 C 1.52997 * 109.47261 * 180.02562 * 16 14 13 20 20 C 1.50703 * 109.46942 * 185.00509 * 19 16 14 21 21 C 1.39674 * 119.64682 * 124.72541 * 20 19 16 22 22 N 1.31343 * 120.70735 * 179.74071 * 21 20 19 23 23 C 1.33742 * 119.70607 * 0.52683 * 22 21 20 24 24 C 1.40589 * 121.09861 * 179.73505 * 23 22 21 25 25 C 1.36061 * 119.71869 * 180.02562 * 24 23 22 26 26 C 1.39407 * 120.96642 * 0.02562 * 25 24 23 27 27 C 1.36068 * 120.97141 * 359.96715 * 26 25 24 28 28 C 1.40592 * 119.71198 * 0.02562 * 27 26 25 29 29 N 1.31336 * 119.63893 * 304.99101 * 20 19 16 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47320 * 59.99749 * 18 16 14 37 37 H 1.09005 * 109.46916 * 179.97438 * 18 16 14 38 38 H 1.09003 * 109.47134 * 299.99097 * 18 16 14 39 39 H 1.09002 * 109.47231 * 304.99694 * 19 16 14 40 40 H 1.08998 * 109.47682 * 65.00060 * 19 16 14 41 41 H 1.07997 * 119.64564 * 359.97438 * 21 20 19 42 42 H 1.07995 * 120.13998 * 0.04434 * 24 23 22 43 43 H 1.07996 * 119.51949 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.51368 * 179.97438 * 26 25 24 45 45 H 1.07990 * 120.14488 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 8 1.6560 2.0916 1.2408 14 6 0.4728 2.7254 1.2561 15 8 -0.2188 2.7377 0.2653 16 6 0.0071 3.4216 2.5088 17 1 0.7241 4.1958 2.7822 18 6 -0.1037 2.4045 3.6464 19 6 -1.3616 4.0584 2.2596 20 6 -1.7719 4.8571 3.4699 21 6 -2.1045 6.2062 3.3271 22 7 -2.4697 6.9206 4.3669 23 6 -2.5141 6.3541 5.5777 24 6 -2.8955 7.0928 6.7114 25 6 -2.9303 6.4884 7.9299 26 6 -2.5922 5.1436 8.0735 27 6 -2.2184 4.3970 6.9990 28 6 -2.1705 4.9865 5.7236 29 7 -1.8078 4.2785 4.6483 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8292 -0.0604 -2.9503 36 1 0.8711 1.9504 3.8240 37 1 -0.4402 2.9081 4.5526 38 1 -0.8208 1.6303 3.3730 39 1 -1.3037 4.7165 1.3926 40 1 -2.0978 3.2764 2.0736 41 1 -2.0644 6.6658 2.3506 42 1 -3.1601 8.1354 6.6155 43 1 -3.2242 7.0587 8.7986 44 1 -2.6276 4.6876 9.0518 45 1 -1.9596 3.3562 7.1255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816039099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:01 Heat of formation + Delta-G solvation = -48.744530 kcal Electronic energy + Delta-G solvation = -27322.677951 eV Core-core repulsion = 23497.303936 eV Total energy + Delta-G solvation = -3825.374014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.51979 -41.44201 -38.83088 -37.78634 -36.49008 -35.50925 -35.03796 -33.32643 -32.01616 -31.48366 -29.34346 -28.57443 -25.97313 -25.75004 -25.01466 -23.76345 -23.19425 -22.00496 -20.84857 -19.52076 -19.20087 -18.82139 -18.52781 -17.57736 -17.14395 -16.99299 -16.44648 -16.08411 -15.89423 -15.40297 -15.32847 -14.92690 -14.81111 -14.73300 -14.34179 -14.06424 -13.78273 -13.54733 -13.34051 -13.22235 -13.09043 -12.83990 -12.81268 -12.72305 -12.69026 -12.62326 -12.51194 -12.22311 -12.16911 -12.12389 -12.02726 -11.73868 -11.40108 -11.10350 -10.80017 -10.51578 -10.02514 -9.86093 -9.53657 -8.27099 -6.43444 -0.78861 -0.46824 0.91971 1.40382 1.41437 1.42546 1.55455 1.79388 2.06281 2.41777 2.90121 2.99319 3.02464 3.14805 3.24147 3.64846 3.68132 3.86271 3.93506 4.05548 4.14483 4.22733 4.30874 4.35337 4.38794 4.41586 4.43317 4.60067 4.72686 4.78297 4.85748 4.92407 4.95409 5.05241 5.06130 5.12524 5.19829 5.21814 5.23686 5.39186 5.40183 5.48618 5.54005 5.68886 5.78382 6.00437 6.16855 6.23957 6.61815 6.68685 7.03600 7.28797 8.79742 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.002392 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.885569 B =11701.252505 C =11824.306663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.009 0.991 5 C -0.548 4.548 6 H 0.063 0.937 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.265 1.265 11 H -0.272 1.272 12 H -0.276 1.276 13 O -0.363 6.363 14 C 0.453 3.547 15 O -0.540 6.540 16 C -0.067 4.067 17 H 0.111 0.889 18 C -0.144 4.144 19 C -0.045 4.045 20 C 0.106 3.894 21 C 0.082 3.918 22 N -0.442 5.442 23 C 0.050 3.950 24 C -0.100 4.100 25 C -0.087 4.087 26 C -0.087 4.087 27 C -0.101 4.101 28 C 0.059 3.941 29 N -0.430 5.430 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.270 0.730 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.052 0.948 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.200 0.800 42 H 0.149 0.851 43 H 0.171 0.829 44 H 0.170 0.830 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.281 10.985 20.669 26.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.026 0.974 5 C -0.586 4.586 6 H 0.081 0.919 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.201 1.201 13 O -0.280 6.280 14 C 0.297 3.703 15 O -0.431 6.431 16 C -0.086 4.086 17 H 0.129 0.871 18 C -0.201 4.201 19 C -0.084 4.084 20 C -0.049 4.049 21 C -0.093 4.093 22 N -0.155 5.155 23 C -0.074 4.074 24 C -0.119 4.119 25 C -0.107 4.107 26 C -0.106 4.106 27 C -0.120 4.120 28 C -0.065 4.065 29 N -0.145 5.145 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.217 0.783 42 H 0.166 0.834 43 H 0.189 0.811 44 H 0.187 0.813 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.497 10.897 20.407 26.783 hybrid contribution 0.892 -0.255 -1.052 1.402 sum -12.605 10.641 19.355 25.431 Atomic orbital electron populations 1.21709 0.96171 1.00533 1.00229 1.21849 0.94567 0.98140 1.02152 1.20357 0.94415 0.89318 0.78782 0.97357 1.21358 0.90691 1.39795 1.06759 0.91865 1.25782 1.04105 0.93939 0.94418 1.70019 1.37276 1.38024 1.09840 0.85192 0.77919 0.78306 0.78337 1.18939 1.19691 1.20102 1.86465 1.36104 1.62990 1.42398 1.24169 0.79451 0.76171 0.90486 1.90587 1.55752 1.59436 1.37294 1.20905 0.97979 0.98937 0.90823 0.87128 1.22022 1.01957 0.97837 0.98260 1.20372 0.94922 0.99626 0.93433 1.22383 0.95406 0.93498 0.93568 1.24291 0.93956 0.91242 0.99762 1.68742 1.10686 1.37174 0.98925 1.20045 1.00823 0.92862 0.93715 1.21076 0.99340 1.00948 0.90543 1.21471 0.96241 0.95164 0.97827 1.21473 0.95248 0.93993 0.99925 1.21097 0.99810 1.01660 0.89482 1.20055 0.99659 0.91896 0.94919 1.68493 1.10590 1.36757 0.98641 0.94418 0.94257 0.92191 0.93825 0.89663 0.92061 0.92713 0.87260 0.92879 0.87500 0.88870 0.78312 0.83362 0.81146 0.81256 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.57 71.98 0.62 -5.07 16 2 C -0.13 -6.56 5.49 30.59 0.17 -6.39 16 3 C 0.22 12.29 2.25 29.85 0.07 12.35 16 4 H 0.01 0.53 7.16 -2.39 -0.02 0.51 16 5 C -0.55 -31.39 8.90 25.60 0.23 -31.16 16 6 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.91 -52.44 11.30 21.45 0.24 -52.19 16 9 Si 0.98 43.20 29.54 68.60 2.03 45.23 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 13 O -0.36 -17.51 9.71 -51.37 -0.50 -18.01 16 14 C 0.45 18.54 5.71 71.24 0.41 18.94 16 15 O -0.54 -24.34 13.06 21.93 0.29 -24.05 16 16 C -0.07 -1.99 2.82 -11.54 -0.03 -2.02 16 17 H 0.11 3.06 8.14 -2.38 -0.02 3.05 16 18 C -0.14 -4.01 8.74 71.98 0.63 -3.38 16 19 C -0.05 -1.12 4.49 29.85 0.13 -0.99 16 20 C 0.11 2.47 6.19 42.98 0.27 2.74 16 21 C 0.08 1.74 10.83 85.11 0.92 2.66 16 22 N -0.44 -10.32 10.46 -188.09 -1.97 -12.29 16 23 C 0.05 1.09 6.59 40.30 0.27 1.35 16 24 C -0.10 -1.53 9.98 22.34 0.22 -1.31 16 25 C -0.09 -0.83 9.95 22.04 0.22 -0.61 16 26 C -0.09 -0.86 9.95 22.05 0.22 -0.64 16 27 C -0.10 -1.63 9.99 22.34 0.22 -1.41 16 28 C 0.06 1.32 6.59 40.30 0.27 1.58 16 29 N -0.43 -10.48 7.13 -176.24 -1.26 -11.74 16 30 H 0.04 1.75 7.80 -2.39 -0.02 1.73 16 31 H 0.04 1.65 6.06 -2.39 -0.01 1.63 16 32 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 4.73 5.95 -2.39 -0.01 4.72 16 35 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.05 1.62 8.11 -2.39 -0.02 1.60 16 37 H 0.11 2.77 5.19 -2.38 -0.01 2.76 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.11 2.43 7.68 -2.39 -0.02 2.41 16 40 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.20 2.95 7.94 -2.91 -0.02 2.92 16 42 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 44 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 45 H 0.15 2.06 8.06 -2.92 -0.02 2.03 16 Total: -1.00 -71.22 369.79 5.10 -66.12 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.00 Total: 18.88 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 5.27 Total: -11.95 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -2.98 Total: -76.22 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -0.21 Total: -42.06 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.22 5.10 -66.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816039099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.377 kcal (2) G-P(sol) polarization free energy of solvation -71.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds