Wall clock time and date at job start Tue Mar 31 2020 16:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50706 * 119.99527 * 2 1 4 4 N 1.46495 * 109.46913 * 125.00039 * 3 2 1 5 5 C 1.46505 * 119.99885 * 269.99681 * 4 3 2 6 6 C 1.50702 * 109.46738 * 269.99875 * 5 4 3 7 7 H 1.07997 * 120.00491 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99620 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00147 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00033 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46773 * 60.00406 * 10 8 6 12 12 H 1.48496 * 109.47256 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47129 * 300.00745 * 10 8 6 14 14 C 1.34780 * 120.00414 * 89.99595 * 4 3 2 15 15 O 1.21278 * 120.00235 * 179.97438 * 14 4 3 16 16 C 1.50703 * 119.99353 * 0.02562 * 14 4 3 17 17 C 1.53003 * 109.46698 * 179.97438 * 16 14 4 18 18 H 1.09004 * 109.45800 * 54.97794 * 17 16 14 19 19 C 1.52907 * 109.46257 * 295.00014 * 17 16 14 20 20 C 1.50497 * 109.90505 * 288.54264 * 19 17 16 21 21 O 1.21292 * 119.61931 * 144.78767 * 20 19 17 22 22 N 1.34566 * 120.76688 * 324.81255 * 20 19 17 23 23 C 1.39819 * 120.45022 * 0.84622 * 22 20 19 24 24 C 1.38867 * 120.18546 * 198.44487 * 23 22 20 25 25 C 1.38110 * 119.89407 * 180.02562 * 24 23 22 26 26 C 1.38310 * 120.08679 * 359.97438 * 25 24 23 27 27 C 1.38275 * 120.14828 * 0.27443 * 26 25 24 28 28 C 1.38092 * 120.03078 * 359.48822 * 27 26 25 29 29 H 1.07998 * 119.99631 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99916 * 0.02562 * 1 2 3 31 31 H 1.07989 * 120.00213 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47291 * 4.99693 * 3 2 1 33 33 H 1.08996 * 109.46637 * 244.99982 * 3 2 1 34 34 H 1.08992 * 109.47107 * 30.00034 * 5 4 3 35 35 H 1.08997 * 109.47128 * 150.00174 * 5 4 3 36 36 H 0.97003 * 119.99899 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.47672 * 59.99712 * 16 14 4 38 38 H 1.08999 * 109.47315 * 299.99661 * 16 14 4 39 39 H 1.08996 * 109.39527 * 168.41626 * 19 17 16 40 40 H 1.08993 * 109.39816 * 48.67407 * 19 17 16 41 41 H 0.96993 * 119.77547 * 180.82916 * 22 20 19 42 42 H 1.07999 * 120.05167 * 0.06396 * 24 23 22 43 43 H 1.08001 * 119.95758 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.92082 * 179.97438 * 26 25 24 45 45 H 1.08007 * 119.98530 * 179.75374 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3032 3.8372 1.6364 8 6 2.5183 4.0669 3.6081 9 7 1.9588 3.4661 4.6356 10 14 2.8714 5.9000 3.6767 11 1 2.1355 6.5869 2.5850 12 1 2.4306 6.4403 4.9878 13 1 4.3292 6.1298 3.5119 14 6 4.2497 0.8663 0.9825 15 8 5.0199 0.8890 1.9190 16 6 4.6972 0.3185 -0.3482 17 6 6.1537 -0.1391 -0.2475 18 1 6.2550 -0.8505 0.5722 19 6 7.0510 1.0710 0.0144 20 6 7.1377 1.9221 -1.2237 21 8 7.2083 3.1284 -1.1182 22 7 7.1374 1.3604 -2.4465 23 6 7.0384 -0.0269 -2.5890 24 6 7.4145 -0.6352 -3.7794 25 6 7.3138 -2.0060 -3.9138 26 6 6.8397 -2.7726 -2.8647 27 6 6.4596 -2.1692 -1.6800 28 6 6.5626 -0.7995 -1.5379 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9352 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6212 1.4027 -0.9314 34 1 1.4887 1.6968 2.5459 35 1 3.0988 1.3605 3.2259 36 1 1.7299 3.9749 5.4292 37 1 4.6126 1.0954 -1.1081 38 1 4.0682 -0.5282 -0.6227 39 1 8.0488 0.7290 0.2892 40 1 6.6342 1.6608 0.8307 41 1 7.2060 1.9219 -3.2345 42 1 7.7858 -0.0372 -4.5985 43 1 7.6056 -2.4801 -4.8393 44 1 6.7616 -3.8443 -2.9728 45 1 6.0859 -2.7699 -0.8639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820223691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:56 Heat of formation + Delta-G solvation = -28.687960 kcal Electronic energy + Delta-G solvation = -28225.590526 eV Core-core repulsion = 24401.086229 eV Total energy + Delta-G solvation = -3824.504296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29218 -39.12071 -38.70757 -35.93891 -35.34505 -34.59913 -33.15607 -32.07067 -30.49222 -29.52683 -29.00191 -27.12877 -25.41953 -24.01896 -22.91072 -22.83597 -22.05266 -19.99351 -19.06807 -18.31354 -18.05252 -17.07657 -16.60949 -16.33305 -16.18985 -15.59423 -15.35092 -14.80949 -14.75030 -14.51871 -14.41769 -14.11031 -13.82576 -13.44534 -13.31819 -13.24690 -12.89920 -12.47088 -12.40456 -12.05298 -11.76006 -11.66438 -11.35261 -11.31753 -11.14313 -11.09560 -10.89703 -10.83416 -10.78297 -10.54562 -10.15249 -9.92804 -9.62941 -9.21022 -9.12013 -8.85536 -8.39888 -8.19353 -7.69678 -6.01543 -4.06079 1.00717 1.09111 2.43191 2.55198 2.95460 3.34688 3.36668 3.39739 3.46327 3.54725 3.95983 4.37963 4.48514 4.52028 4.56666 4.77359 4.86155 4.95982 5.05881 5.14288 5.19313 5.26256 5.32053 5.34759 5.40275 5.50960 5.62186 5.70609 5.71358 5.79943 5.90074 6.00026 6.04789 6.18075 6.19721 6.20763 6.31918 6.60008 6.71645 6.77142 6.89506 7.07595 7.08240 7.45411 7.54874 7.94880 7.98798 8.25742 8.39044 8.90958 9.06792 9.59216 11.06436 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.003817 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.715099 B = 7334.178699 C = 8555.437334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.167 4.167 3 C 0.135 3.865 4 N -0.591 5.591 5 C 0.248 3.752 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.506 3.494 15 O -0.538 6.538 16 C -0.136 4.136 17 C -0.026 4.026 18 H 0.105 0.895 19 C -0.142 4.142 20 C 0.520 3.480 21 O -0.519 6.519 22 N -0.669 5.669 23 C 0.168 3.832 24 C -0.157 4.157 25 C -0.091 4.091 26 C -0.145 4.145 27 C -0.079 4.079 28 C -0.114 4.114 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.134 0.866 41 H 0.407 0.593 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.470 -14.044 -18.360 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.187 4.187 3 C 0.011 3.989 4 N -0.321 5.321 5 C 0.129 3.871 6 C -0.566 4.566 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.293 3.707 15 O -0.416 6.416 16 C -0.176 4.176 17 C -0.045 4.045 18 H 0.123 0.877 19 C -0.181 4.181 20 C 0.310 3.690 21 O -0.393 6.393 22 N -0.314 5.314 23 C 0.071 3.929 24 C -0.178 4.178 25 C -0.110 4.110 26 C -0.164 4.164 27 C -0.097 4.097 28 C -0.117 4.117 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.152 0.848 41 H 0.245 0.755 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.822 -13.308 -17.360 22.913 hybrid contribution 0.060 1.186 -0.457 1.273 sum 6.882 -12.121 -17.817 22.622 Atomic orbital electron populations 1.23822 0.95851 1.01772 1.00542 1.23407 0.96384 0.98941 0.99940 1.20586 0.93170 0.95396 0.89734 1.48228 1.10487 1.59836 1.13591 1.19275 0.95368 0.93765 0.78688 1.21405 1.40551 0.93328 1.01295 0.92488 1.24909 0.94995 0.98701 0.95319 1.69926 1.42062 1.36248 1.05179 0.86589 0.79021 0.84973 0.77075 1.20266 1.21196 1.20038 1.20220 0.82429 0.78646 0.89393 1.90638 1.52241 1.56716 1.41995 1.21812 0.96192 1.02157 0.97460 1.19769 0.93416 0.96629 0.94707 0.87656 1.21992 1.02641 0.97261 0.96206 1.21053 0.74153 0.88849 0.84995 1.90798 1.47110 1.14929 1.86498 1.43745 1.72352 1.05769 1.09534 1.17680 0.97571 0.82740 0.94875 1.20757 1.04742 0.95431 0.96848 1.20942 0.98309 0.92923 0.98820 1.21090 1.01677 1.00030 0.93574 1.20917 0.97881 0.93034 0.97879 1.19589 1.02713 0.93979 0.95425 0.88758 0.88292 0.87782 0.89442 0.90955 0.95033 0.93802 0.92705 0.89845 0.88850 0.88094 0.84794 0.75535 0.85638 0.85707 0.85816 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.01 0.42 -1.91 16 2 C -0.17 -2.33 9.74 -36.03 -0.35 -2.68 16 3 C 0.14 2.20 5.65 -5.19 -0.03 2.18 16 4 N -0.59 -12.31 2.44 -176.43 -0.43 -12.74 16 5 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 6 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 9 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 10 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.51 10.03 7.28 -10.98 -0.08 9.95 16 15 O -0.54 -12.57 13.63 5.56 0.08 -12.50 16 16 C -0.14 -1.94 3.65 -27.88 -0.10 -2.04 16 17 C -0.03 -0.34 2.06 -91.86 -0.19 -0.53 16 18 H 0.11 1.35 7.88 -51.93 -0.41 0.94 16 19 C -0.14 -2.11 5.29 -28.03 -0.15 -2.26 16 20 C 0.52 7.99 6.97 -11.18 -0.08 7.91 16 21 O -0.52 -10.13 17.91 5.55 0.10 -10.03 16 22 N -0.67 -7.75 5.36 -10.01 -0.05 -7.81 16 23 C 0.17 1.74 6.50 -83.75 -0.54 1.20 16 24 C -0.16 -1.29 9.92 -39.40 -0.39 -1.68 16 25 C -0.09 -0.66 10.04 -39.60 -0.40 -1.06 16 26 C -0.14 -1.09 10.04 -39.54 -0.40 -1.49 16 27 C -0.08 -0.69 9.69 -39.62 -0.38 -1.08 16 28 C -0.11 -1.22 4.91 -104.49 -0.51 -1.73 16 29 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.10 1.26 7.84 -52.49 -0.41 0.85 16 31 H 0.10 1.32 7.83 -52.49 -0.41 0.91 16 32 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 33 H 0.07 1.02 6.44 -51.93 -0.33 0.68 16 34 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 1.20 6.76 -51.93 -0.35 0.85 16 38 H 0.09 1.11 7.78 -51.93 -0.40 0.71 16 39 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.13 2.52 5.83 -51.93 -0.30 2.22 16 41 H 0.41 3.95 8.83 -40.82 -0.36 3.59 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -34.89 376.51 -8.83 -43.72 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.27 Total: 4.85 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -3.64 Total: -2.51 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.25 Total: -46.62 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.18 Total: -22.53 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.89 -8.83 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820223691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.034 kcal (2) G-P(sol) polarization free energy of solvation -34.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds