Wall clock time and date at job start Tue Mar 31 2020 15:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 N 1.46896 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.46900 * 111.00376 * 294.30220 * 5 4 3 7 7 C 1.53231 * 109.34323 * 172.74398 * 6 5 4 8 8 N 1.47087 * 108.51937 * 53.82846 * 7 6 5 9 9 S 1.65602 * 120.87828 * 128.83761 * 8 7 6 10 10 O 1.42098 * 104.28018 * 26.04589 * 9 8 7 11 11 O 1.42100 * 104.27939 * 153.90663 * 9 8 7 12 12 C 1.81398 * 104.44844 * 269.97587 * 9 8 7 13 13 C 1.53001 * 109.47312 * 179.97438 * 12 9 8 14 14 C 1.52998 * 109.47131 * 300.00461 * 13 12 9 15 15 C 1.53005 * 109.46923 * 60.00114 * 13 12 9 16 16 C 1.50700 * 109.47218 * 180.02562 * 13 12 9 17 17 H 1.07991 * 120.00319 * 359.97438 * 16 13 12 18 18 C 1.37883 * 119.99757 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00188 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99703 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46962 * 60.00138 * 20 18 16 22 22 H 1.48507 * 109.46776 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47323 * 299.99697 * 20 18 16 24 24 C 1.47078 * 118.23950 * 308.81451 * 8 7 6 25 25 C 1.46902 * 111.00219 * 169.99469 * 5 4 3 26 26 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 28 28 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 29 29 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 30 30 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 31 31 H 1.08997 * 109.48757 * 292.70474 * 6 5 4 32 32 H 1.08998 * 109.49138 * 52.78183 * 6 5 4 33 33 H 1.08996 * 109.63244 * 294.12072 * 7 6 5 34 34 H 1.09002 * 109.62942 * 173.53447 * 7 6 5 35 35 H 1.09001 * 109.47600 * 300.00115 * 12 9 8 36 36 H 1.09006 * 109.47246 * 60.00340 * 12 9 8 37 37 H 1.08994 * 109.47588 * 59.99668 * 14 13 12 38 38 H 1.09008 * 109.47063 * 179.97438 * 14 13 12 39 39 H 1.09006 * 109.46989 * 299.99353 * 14 13 12 40 40 H 1.08997 * 109.46891 * 59.99972 * 15 13 12 41 41 H 1.09001 * 109.46885 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47378 * 300.00180 * 15 13 12 43 43 H 0.97008 * 120.00264 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.62721 * 291.47607 * 24 8 7 45 45 H 1.09006 * 109.62764 * 170.89520 * 24 8 7 46 46 H 1.08994 * 109.49736 * 307.22095 * 25 5 4 47 47 H 1.09005 * 109.48636 * 67.29821 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 7 4.6256 -1.4177 -0.2576 6 6 5.1512 -0.6396 -1.3872 7 6 6.6721 -0.5112 -1.2511 8 7 7.2434 -1.8586 -1.1047 9 16 8.4953 -2.3601 -2.0658 10 8 9.1554 -1.1578 -2.4372 11 8 9.1574 -3.3501 -1.2908 12 6 7.6875 -3.1133 -3.5048 13 6 8.7519 -3.6212 -4.4795 14 6 9.6233 -2.4504 -4.9385 15 6 9.6263 -4.6647 -3.7812 16 6 8.0808 -4.2464 -5.6752 17 1 7.0029 -4.2786 -5.7340 18 6 8.8430 -4.7781 -6.6938 19 7 10.1555 -4.7402 -6.6215 20 14 8.0110 -5.5537 -8.1756 21 1 7.1628 -4.5407 -8.8536 22 1 9.0443 -6.0466 -9.1216 23 1 7.1649 -6.6898 -7.7301 24 6 6.6738 -2.7486 -0.0816 25 6 5.1528 -2.7889 -0.2637 26 1 -1.0498 -0.0004 0.0001 27 1 3.0090 0.6649 -0.7843 28 1 3.0092 0.3479 0.9672 29 1 2.7936 -2.0829 0.5272 30 1 2.7934 -1.7658 -1.2243 31 1 4.9112 -1.1472 -2.3215 32 1 4.7009 0.3530 -1.3860 33 1 6.9119 0.0858 -0.3713 34 1 7.0806 -0.0352 -2.1426 35 1 7.0663 -3.9471 -3.1778 36 1 7.0649 -2.3697 -4.0026 37 1 10.1087 -1.9978 -4.0739 38 1 10.3820 -2.8124 -5.6325 39 1 9.0004 -1.7070 -5.4360 40 1 9.0055 -5.4988 -3.4542 41 1 10.3843 -5.0269 -4.4757 42 1 10.1117 -4.2122 -2.9165 43 1 10.6918 -5.1140 -7.3383 44 1 6.9137 -2.3667 0.9106 45 1 7.0834 -3.7518 -0.1999 46 1 4.7036 -3.3550 0.5522 47 1 4.9127 -3.2665 -1.2137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830194820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:36 Heat of formation + Delta-G solvation = -8.111751 kcal Electronic energy + Delta-G solvation = -27284.688739 eV Core-core repulsion = 23596.520645 eV Total energy + Delta-G solvation = -3688.168094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.25177 -36.62793 -36.29825 -35.85452 -35.28142 -33.65034 -31.68311 -31.31874 -30.03564 -26.79443 -26.24359 -25.73561 -25.24278 -23.96221 -22.64665 -20.69084 -19.34715 -18.59973 -18.29554 -17.46205 -16.06199 -15.98245 -15.65799 -15.54641 -15.44430 -14.99014 -14.75833 -14.56852 -14.43512 -13.89736 -13.43605 -13.18085 -13.04711 -12.85396 -12.52433 -12.43857 -12.13566 -12.05442 -11.94440 -11.59602 -11.38215 -11.21499 -11.16773 -11.06005 -10.98399 -10.84604 -10.71144 -10.50777 -10.40310 -10.29822 -10.29003 -10.12277 -9.67299 -9.60363 -9.06030 -8.69030 -8.48232 -8.42087 -6.05386 -4.17671 0.80897 2.48674 2.56047 3.05098 3.24834 3.30573 3.31939 3.56014 4.20965 4.31499 4.39501 4.56868 4.59163 4.66668 4.83678 4.96401 5.12738 5.14234 5.19544 5.21367 5.28716 5.32878 5.46687 5.53556 5.63583 5.65116 5.66389 5.68759 5.75171 5.84203 5.98475 6.07995 6.35690 6.64616 6.68264 6.77670 6.77962 6.78449 6.88853 7.02497 7.29258 7.32924 7.48386 7.65439 7.96109 8.07462 8.30999 8.80507 9.47766 10.95837 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.003440 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.051158 B = 8137.707017 C = 9337.229050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.184 4.184 3 C -0.012 4.012 4 C 0.060 3.940 5 N -0.536 5.536 6 C 0.033 3.967 7 C 0.128 3.872 8 N -1.011 6.011 9 S 2.593 3.407 10 O -0.961 6.961 11 O -0.961 6.961 12 C -0.582 4.582 13 C 0.083 3.917 14 C -0.163 4.163 15 C -0.164 4.164 16 C -0.503 4.503 17 H 0.057 0.943 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.128 3.872 25 C 0.040 3.960 26 H 0.216 0.784 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.028 0.972 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.095 0.905 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.794 7.428 12.960 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.184 4.184 3 C -0.049 4.049 4 C -0.068 4.068 5 N -0.260 5.260 6 C -0.096 4.096 7 C 0.002 3.998 8 N -0.848 5.848 9 S 2.692 3.308 10 O -0.951 6.951 11 O -0.951 6.951 12 C -0.715 4.715 13 C 0.081 3.919 14 C -0.221 4.221 15 C -0.221 4.221 16 C -0.543 4.543 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.203 1.203 24 C 0.002 3.998 25 C -0.090 4.090 26 H 0.233 0.767 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.046 0.954 38 H 0.113 0.887 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.114 0.886 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.507 7.718 13.533 19.979 hybrid contribution -1.713 -1.007 -1.949 2.784 sum -14.220 6.711 11.584 19.530 Atomic orbital electron populations 1.24908 0.95987 1.00522 1.01507 1.23089 0.94506 1.00644 1.00179 1.18732 0.84204 0.97867 1.04058 1.22018 0.87307 0.96282 1.01146 1.61848 1.06593 1.13878 1.43718 1.22638 0.95948 0.98964 0.92091 1.21427 0.91718 0.83379 1.03275 1.58123 1.55009 1.21859 1.49778 1.05747 0.74279 0.74757 0.75991 1.93533 1.71435 1.46018 1.84147 1.93534 1.71355 1.61669 1.68576 1.30583 1.12694 1.11450 1.16792 1.17916 0.89244 0.92997 0.91776 1.22274 1.01575 0.96908 1.01360 1.22274 1.01581 0.99345 0.98926 1.20900 0.92677 1.38170 1.02533 0.92465 1.24935 0.94898 0.95691 0.98158 1.69788 1.03933 1.45313 1.33095 0.86605 0.79112 0.79608 0.82341 1.20286 1.21134 1.20283 1.21427 0.91713 0.94416 0.92227 1.22531 0.95900 0.89040 1.01484 0.76711 0.89376 0.88559 0.90215 0.94253 0.93815 0.89376 0.90569 0.88772 0.86675 0.86675 0.95351 0.88655 0.94517 0.94525 0.88639 0.95352 0.92651 0.90570 0.88747 0.89536 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.70 19.25 29.55 0.57 -1.13 16 2 C -0.18 -1.64 13.34 -37.12 -0.50 -2.14 16 3 C -0.01 -0.09 5.63 -29.52 -0.17 -0.26 16 4 C 0.06 0.50 4.92 -3.83 -0.02 0.48 16 5 N -0.54 -5.09 4.63 -234.33 -1.08 -6.17 16 6 C 0.03 0.32 5.46 -3.70 -0.02 0.30 16 7 C 0.13 1.51 6.47 -3.60 -0.02 1.48 16 8 N -1.01 -14.15 3.26 -113.24 -0.37 -14.52 16 9 S 2.59 47.83 4.45 -107.50 -0.48 47.35 16 10 O -0.96 -19.90 14.41 -57.54 -0.83 -20.73 16 11 O -0.96 -19.91 14.41 -57.54 -0.83 -20.74 16 12 C -0.58 -11.25 5.12 37.16 0.19 -11.06 16 13 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 14 C -0.16 -4.01 7.77 37.16 0.29 -3.72 16 15 C -0.16 -4.01 7.78 37.16 0.29 -3.72 16 16 C -0.50 -13.17 8.01 -34.44 -0.28 -13.45 16 17 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 19 N -0.88 -24.06 9.35 55.43 0.52 -23.54 16 20 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.13 1.51 6.47 -3.60 -0.02 1.49 16 25 C 0.04 0.39 5.62 -3.70 -0.02 0.37 16 26 H 0.22 1.02 7.80 -54.10 -0.42 0.60 16 27 H 0.09 0.62 6.40 -51.93 -0.33 0.29 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.63 7.97 -51.93 -0.41 0.21 16 30 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.68 6.16 -51.93 -0.32 0.36 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.13 7.19 -51.93 -0.37 0.75 16 35 H 0.11 2.04 8.14 -51.92 -0.42 1.61 16 36 H 0.11 2.04 8.14 -51.92 -0.42 1.61 16 37 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 38 H 0.09 2.52 6.07 -51.92 -0.32 2.21 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 42 H 0.03 0.66 5.47 -51.93 -0.28 0.38 16 43 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.14 7.19 -51.93 -0.37 0.76 16 46 H 0.09 0.69 7.99 -51.93 -0.41 0.28 16 47 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -31.81 374.10 -9.95 -41.76 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.62 Total: 3.20 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 0.12 Total: -27.80 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.94 Total: -44.23 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.66 Total: -41.46 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 47.83 SS G_CDS: -0.48 Total: 47.35 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.81 -9.95 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830194820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.649 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds