Wall clock time and date at job start Tue Mar 31 2020 15:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 N 1.46896 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.46900 * 111.00376 * 294.30220 * 5 4 3 7 7 C 1.53231 * 109.34323 * 172.74398 * 6 5 4 8 8 N 1.47087 * 108.51937 * 53.82846 * 7 6 5 9 9 S 1.65602 * 120.87828 * 128.83761 * 8 7 6 10 10 O 1.42098 * 104.28018 * 26.04589 * 9 8 7 11 11 O 1.42100 * 104.27939 * 153.90663 * 9 8 7 12 12 C 1.81398 * 104.44844 * 269.97587 * 9 8 7 13 13 C 1.53001 * 109.47312 * 179.97438 * 12 9 8 14 14 C 1.52998 * 109.47131 * 300.00461 * 13 12 9 15 15 C 1.53005 * 109.46923 * 60.00114 * 13 12 9 16 16 C 1.50700 * 109.47218 * 180.02562 * 13 12 9 17 17 H 1.07991 * 120.00319 * 359.97438 * 16 13 12 18 18 C 1.37883 * 119.99757 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00188 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99703 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46962 * 60.00138 * 20 18 16 22 22 H 1.48507 * 109.46776 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47323 * 299.99697 * 20 18 16 24 24 C 1.47078 * 118.23950 * 308.81451 * 8 7 6 25 25 C 1.46902 * 111.00219 * 169.99469 * 5 4 3 26 26 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 28 28 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 29 29 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 30 30 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 31 31 H 1.08997 * 109.48757 * 292.70474 * 6 5 4 32 32 H 1.08998 * 109.49138 * 52.78183 * 6 5 4 33 33 H 1.08996 * 109.63244 * 294.12072 * 7 6 5 34 34 H 1.09002 * 109.62942 * 173.53447 * 7 6 5 35 35 H 1.09001 * 109.47600 * 300.00115 * 12 9 8 36 36 H 1.09006 * 109.47246 * 60.00340 * 12 9 8 37 37 H 1.08994 * 109.47588 * 59.99668 * 14 13 12 38 38 H 1.09008 * 109.47063 * 179.97438 * 14 13 12 39 39 H 1.09006 * 109.46989 * 299.99353 * 14 13 12 40 40 H 1.08997 * 109.46891 * 59.99972 * 15 13 12 41 41 H 1.09001 * 109.46885 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47378 * 300.00180 * 15 13 12 43 43 H 0.97008 * 120.00264 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.62721 * 291.47607 * 24 8 7 45 45 H 1.09006 * 109.62764 * 170.89520 * 24 8 7 46 46 H 1.08994 * 109.49736 * 307.22095 * 25 5 4 47 47 H 1.09005 * 109.48636 * 67.29821 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 7 4.6256 -1.4177 -0.2576 6 6 5.1512 -0.6396 -1.3872 7 6 6.6721 -0.5112 -1.2511 8 7 7.2434 -1.8586 -1.1047 9 16 8.4953 -2.3601 -2.0658 10 8 9.1554 -1.1578 -2.4372 11 8 9.1574 -3.3501 -1.2908 12 6 7.6875 -3.1133 -3.5048 13 6 8.7519 -3.6212 -4.4795 14 6 9.6233 -2.4504 -4.9385 15 6 9.6263 -4.6647 -3.7812 16 6 8.0808 -4.2464 -5.6752 17 1 7.0029 -4.2786 -5.7340 18 6 8.8430 -4.7781 -6.6938 19 7 10.1555 -4.7402 -6.6215 20 14 8.0110 -5.5537 -8.1756 21 1 7.1628 -4.5407 -8.8536 22 1 9.0443 -6.0466 -9.1216 23 1 7.1649 -6.6898 -7.7301 24 6 6.6738 -2.7486 -0.0816 25 6 5.1528 -2.7889 -0.2637 26 1 -1.0498 -0.0004 0.0001 27 1 3.0090 0.6649 -0.7843 28 1 3.0092 0.3479 0.9672 29 1 2.7936 -2.0829 0.5272 30 1 2.7934 -1.7658 -1.2243 31 1 4.9112 -1.1472 -2.3215 32 1 4.7009 0.3530 -1.3860 33 1 6.9119 0.0858 -0.3713 34 1 7.0806 -0.0352 -2.1426 35 1 7.0663 -3.9471 -3.1778 36 1 7.0649 -2.3697 -4.0026 37 1 10.1087 -1.9978 -4.0739 38 1 10.3820 -2.8124 -5.6325 39 1 9.0004 -1.7070 -5.4360 40 1 9.0055 -5.4988 -3.4542 41 1 10.3843 -5.0269 -4.4757 42 1 10.1117 -4.2122 -2.9165 43 1 10.6918 -5.1140 -7.3383 44 1 6.9137 -2.3667 0.9106 45 1 7.0834 -3.7518 -0.1999 46 1 4.7036 -3.3550 0.5522 47 1 4.9127 -3.2665 -1.2137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830194820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:34 Heat of formation + Delta-G solvation = -28.807089 kcal Electronic energy + Delta-G solvation = -27285.586156 eV Core-core repulsion = 23596.520645 eV Total energy + Delta-G solvation = -3689.065511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.06810 -38.18255 -38.14416 -36.94950 -36.57320 -34.38683 -33.64523 -32.16833 -30.73146 -28.40087 -27.70848 -27.28880 -27.12434 -24.81630 -23.38661 -21.73768 -21.08409 -19.76042 -19.00059 -18.77272 -17.92039 -17.21305 -16.98187 -16.74772 -16.40737 -16.28500 -15.71821 -15.64315 -15.43493 -15.04142 -14.70907 -14.61205 -14.43928 -14.21662 -13.88779 -13.66580 -13.47985 -13.25374 -12.95976 -12.94101 -12.84709 -12.81313 -12.64903 -12.51665 -12.25559 -12.19984 -12.16219 -12.04552 -11.96690 -11.85849 -11.58442 -11.36468 -11.10847 -10.90279 -10.65094 -10.42839 -10.02923 -9.28499 -8.04565 -6.23616 -0.64972 1.43677 1.44001 1.51345 1.77154 1.87870 1.95830 2.42586 2.84106 2.91036 3.16641 3.22127 3.59252 3.70481 3.98421 4.02659 4.03059 4.16270 4.20292 4.34270 4.36538 4.45402 4.52270 4.58074 4.59401 4.73302 4.80528 4.83874 4.84785 4.95068 4.96315 5.01739 5.04649 5.06463 5.10774 5.15692 5.24229 5.36701 5.48307 5.62349 5.63774 5.95848 6.02877 6.06646 6.09871 6.32524 6.74453 6.80811 7.44740 8.95035 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.003440 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.051158 B = 8137.707017 C = 9337.229050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.215 4.215 3 C -0.008 4.008 4 C 0.065 3.935 5 N -0.536 5.536 6 C 0.035 3.965 7 C 0.120 3.880 8 N -1.004 6.004 9 S 2.611 3.389 10 O -0.986 6.986 11 O -0.987 6.987 12 C -0.585 4.585 13 C 0.071 3.929 14 C -0.159 4.159 15 C -0.159 4.159 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.019 3.981 19 N -0.907 5.907 20 Si 0.953 3.047 21 H -0.272 1.272 22 H -0.287 1.287 23 H -0.272 1.272 24 C 0.120 3.880 25 C 0.042 3.958 26 H 0.240 0.760 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.037 0.963 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.109 0.891 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 7.929 13.819 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.215 4.215 3 C -0.045 4.045 4 C -0.062 4.062 5 N -0.261 5.261 6 C -0.094 4.094 7 C -0.005 4.005 8 N -0.843 5.843 9 S 2.709 3.291 10 O -0.977 6.977 11 O -0.977 6.977 12 C -0.717 4.717 13 C 0.069 3.931 14 C -0.217 4.217 15 C -0.217 4.217 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.181 4.181 19 N -0.546 5.546 20 Si 0.779 3.221 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.005 4.005 25 C -0.088 4.088 26 H 0.257 0.743 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.127 0.873 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.950 8.216 14.386 22.314 hybrid contribution -1.008 -1.119 -2.133 2.611 sum -15.957 7.096 12.252 21.333 Atomic orbital electron populations 1.25679 0.96958 0.99556 1.00654 1.23544 0.95348 1.01581 1.01053 1.18713 0.83754 0.97469 1.04531 1.21989 0.86332 0.96918 1.00983 1.61855 1.07318 1.13510 1.43389 1.22646 0.94506 1.00317 0.91973 1.21684 0.93031 0.82079 1.03734 1.57783 1.54375 1.23032 1.49095 1.04909 0.74649 0.73828 0.75676 1.93491 1.72765 1.46725 1.84690 1.93492 1.72693 1.62613 1.68891 1.30509 1.11768 1.12628 1.16780 1.17899 0.90205 0.92540 0.92476 1.22202 1.01223 0.97289 1.01003 1.22202 1.01232 0.99792 0.98500 1.21258 0.93005 1.38200 1.03410 0.92090 1.25673 0.95420 0.96301 1.00707 1.69933 1.05032 1.45941 1.33687 0.85686 0.78163 0.78905 0.79310 1.19712 1.21234 1.19706 1.21674 0.93027 0.93846 0.91919 1.22535 0.94460 0.89620 1.02154 0.74309 0.88815 0.88053 0.89633 0.94933 0.94428 0.87048 0.89334 0.89187 0.85112 0.85112 0.94895 0.91072 0.94139 0.94155 0.91053 0.94899 0.92861 0.89415 0.89172 0.87307 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.95 19.25 74.32 1.43 -1.52 16 2 C -0.21 -3.42 13.34 31.13 0.42 -3.01 16 3 C -0.01 -0.10 5.63 28.79 0.16 0.06 16 4 C 0.07 0.93 4.92 86.30 0.42 1.35 16 5 N -0.54 -8.76 4.63 -895.28 -4.14 -12.90 16 6 C 0.03 0.60 5.46 86.38 0.47 1.07 16 7 C 0.12 2.59 6.47 86.34 0.56 3.14 16 8 N -1.00 -26.52 3.26 -512.17 -1.67 -28.19 16 9 S 2.61 94.61 4.45 -56.49 -0.25 94.36 16 10 O -0.99 -40.51 14.41 -127.65 -1.84 -42.35 16 11 O -0.99 -40.56 14.41 -127.65 -1.84 -42.40 16 12 C -0.58 -22.12 5.12 71.98 0.37 -21.75 16 13 C 0.07 3.42 0.52 -52.93 -0.03 3.39 16 14 C -0.16 -7.93 7.77 71.98 0.56 -7.37 16 15 C -0.16 -7.93 7.78 71.98 0.56 -7.38 16 16 C -0.52 -27.07 8.01 25.60 0.21 -26.87 16 17 H 0.06 3.05 7.74 -2.92 -0.02 3.03 16 18 C 0.02 0.98 5.15 84.66 0.44 1.42 16 19 N -0.91 -50.30 9.35 21.45 0.20 -50.10 16 20 Si 0.95 42.02 29.54 68.60 2.03 44.04 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 C 0.12 2.61 6.47 86.35 0.56 3.17 16 25 C 0.04 0.72 5.62 86.38 0.49 1.21 16 26 H 0.24 1.66 7.80 -4.43 -0.03 1.63 16 27 H 0.09 1.08 6.40 -2.39 -0.02 1.07 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.12 7.97 -2.39 -0.02 1.10 16 30 H 0.03 0.51 8.12 -2.38 -0.02 0.49 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 1.39 6.16 -2.39 -0.01 1.38 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 2.03 7.19 -2.39 -0.02 2.01 16 35 H 0.13 4.46 8.14 -2.39 -0.02 4.44 16 36 H 0.13 4.46 8.14 -2.39 -0.02 4.44 16 37 H 0.03 1.56 5.46 -2.39 -0.01 1.55 16 38 H 0.07 3.87 6.07 -2.38 -0.01 3.85 16 39 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 42 H 0.03 1.56 5.47 -2.39 -0.01 1.55 16 43 H 0.26 13.93 8.31 -92.70 -0.77 13.16 16 44 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.09 2.04 7.19 -2.38 -0.02 2.03 16 46 H 0.11 1.41 7.99 -2.39 -0.02 1.39 16 47 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -67.72 374.10 0.03 -67.69 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.94 Total: 22.94 kcal Atomic # 6 Polarization: -59.69 SS G_CDS: 6.61 Total: -53.08 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -5.61 Total: -91.19 kcal Atomic # 8 Polarization: -81.07 SS G_CDS: -3.68 Total: -84.75 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 94.61 SS G_CDS: -0.25 Total: 94.36 kcal Total: -67.72 0.03 -67.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830194820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.879 kcal (2) G-P(sol) polarization free energy of solvation -67.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds