Wall clock time and date at job start Tue Mar 31 2020 14:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47277 * 2 1 4 4 C 1.50708 * 109.46705 * 239.99965 * 2 1 3 5 5 H 1.07996 * 119.99979 * 240.00147 * 4 2 1 6 6 C 1.37874 * 119.99850 * 60.00161 * 4 2 1 7 7 N 1.31520 * 120.00274 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00233 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46789 * 59.99629 * 8 6 4 10 10 H 1.48496 * 109.47493 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47210 * 300.00355 * 8 6 4 12 12 C 1.52997 * 109.47229 * 120.00611 * 2 1 3 13 13 O 1.45208 * 109.46750 * 299.99530 * 12 2 1 14 14 C 1.34715 * 116.99935 * 179.97438 * 13 12 2 15 15 O 1.21473 * 119.99698 * 0.02562 * 14 13 12 16 16 C 1.47718 * 119.99836 * 179.97438 * 14 13 12 17 17 C 1.39642 * 120.15342 * 0.02562 * 16 14 13 18 18 C 1.37926 * 119.85220 * 180.02562 * 17 16 14 19 19 C 1.38386 * 120.14745 * 359.97438 * 18 17 16 20 20 C 1.38348 * 120.30440 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.92409 * 179.97438 * 20 19 18 22 22 N 1.46498 * 109.47209 * 90.00276 * 21 20 19 23 23 C 1.36881 * 126.39751 * 89.99579 * 22 21 20 24 24 C 1.34668 * 106.81875 * 180.02562 * 23 22 21 25 25 N 1.34134 * 108.01972 * 359.97438 * 24 23 22 26 26 C 1.30501 * 109.25535 * 0.02562 * 25 24 23 27 27 C 1.37962 * 120.14897 * 0.25486 * 20 19 18 28 28 H 1.09001 * 109.46733 * 299.99801 * 1 2 3 29 29 H 1.09004 * 109.47209 * 59.99468 * 1 2 3 30 30 H 1.08998 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47470 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47436 * 300.00394 * 3 2 1 33 33 H 1.08997 * 109.47149 * 59.99914 * 3 2 1 34 34 H 0.96991 * 120.00119 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47417 * 179.97438 * 12 2 1 36 36 H 1.08998 * 109.47251 * 59.99529 * 12 2 1 37 37 H 1.08005 * 120.07460 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.92748 * 179.97438 * 18 17 16 39 39 H 1.07996 * 119.84664 * 180.02562 * 19 18 17 40 40 H 1.08997 * 109.47211 * 330.00477 * 21 20 19 41 41 H 1.09004 * 109.47037 * 210.00050 * 21 20 19 42 42 H 1.08003 * 126.59103 * 359.97438 * 23 22 21 43 43 H 1.08001 * 125.99672 * 180.02562 * 24 23 22 44 44 H 1.07996 * 125.64878 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.07668 * 179.70339 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2306 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3222 -1.1195 -4.0081 9 1 1.8277 -2.5198 -4.0082 10 1 1.8266 -0.4199 -5.2205 11 1 3.8073 -1.1191 -4.0079 12 6 2.0401 -0.7214 1.2491 13 8 1.5561 -0.0369 2.4348 14 6 1.9176 -0.5491 3.6271 15 8 2.6184 -1.5402 3.6750 16 6 1.4628 0.0951 4.8762 17 6 0.6576 1.2348 4.8248 18 6 0.2370 1.8316 5.9950 19 6 0.6107 1.3030 7.2181 20 6 1.4082 0.1740 7.2764 21 6 1.8106 -0.3940 8.6129 22 7 0.8129 -1.3750 9.0469 23 6 0.8233 -2.7172 8.7786 24 6 -0.2720 -3.2399 9.3624 25 7 -0.9328 -2.2440 9.9712 26 6 -0.2890 -1.1240 9.7863 27 6 1.8408 -0.4295 6.1136 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7089 1.1615 -3.4843 35 1 3.1300 -0.7218 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 0.3649 1.6481 3.8709 38 1 -0.3854 2.7133 5.9566 39 1 0.2782 1.7739 8.1313 40 1 1.8719 0.4103 9.3460 41 1 2.7825 -0.8794 8.5238 42 1 1.5665 -3.2539 8.2075 43 1 -0.5663 -4.2788 9.3445 44 1 -0.5879 -0.1567 10.1621 45 1 2.4673 -1.3079 6.1605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835303614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:12 Heat of formation + Delta-G solvation = -2.530931 kcal Electronic energy + Delta-G solvation = -26939.618409 eV Core-core repulsion = 23116.248366 eV Total energy + Delta-G solvation = -3823.370042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.26471 -40.36817 -39.04168 -36.61261 -35.00349 -34.83025 -31.74322 -31.34668 -31.18193 -29.63208 -26.83899 -26.07054 -25.66900 -25.25462 -23.94895 -22.43452 -21.52916 -21.24662 -20.48750 -18.89968 -18.07010 -17.40185 -16.79364 -16.13615 -15.90037 -15.84656 -15.53447 -15.34035 -14.75760 -14.48822 -14.31576 -14.15556 -13.59260 -13.53576 -13.27414 -13.17397 -12.91304 -12.75375 -12.58339 -12.06365 -11.90530 -11.53636 -11.50787 -11.21944 -10.98980 -10.77478 -10.46133 -10.35461 -10.23183 -10.17174 -9.96308 -9.90910 -9.48259 -9.37452 -9.30430 -9.25366 -8.81465 -8.73202 -8.41074 -6.05669 -4.17503 0.50400 0.89516 1.83946 2.43467 2.77598 2.99128 3.04332 3.27059 3.31675 3.35436 3.60242 4.12604 4.15891 4.35077 4.47613 4.56324 4.65294 4.66494 4.83008 4.93273 5.03724 5.17012 5.20805 5.26449 5.47862 5.51008 5.58184 5.89944 6.00592 6.04342 6.05404 6.08466 6.09324 6.40643 6.49617 6.51839 6.68199 6.92169 6.93164 6.95745 7.08020 7.09128 7.34894 7.57323 7.66134 7.85854 8.00487 8.06480 8.15857 8.34587 8.82083 9.48184 10.95577 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.002308 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.490818 B =12129.432357 C =12607.494965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.071 3.929 3 C -0.130 4.130 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.085 3.915 13 O -0.342 6.342 14 C 0.498 3.502 15 O -0.515 6.515 16 C -0.115 4.115 17 C -0.048 4.048 18 C -0.132 4.132 19 C -0.071 4.071 20 C -0.137 4.137 21 C 0.150 3.850 22 N -0.455 5.455 23 C -0.051 4.051 24 C -0.032 4.032 25 N -0.497 5.497 26 C 0.181 3.819 27 C -0.038 4.038 28 H 0.016 0.984 29 H 0.085 0.915 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.085 0.915 33 H 0.016 0.984 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.173 0.827 43 H 0.168 0.832 44 H 0.202 0.798 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 2.395 22.699 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.071 3.929 3 C -0.187 4.187 4 C -0.551 4.551 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.012 3.988 13 O -0.258 6.258 14 C 0.342 3.658 15 O -0.406 6.406 16 C -0.116 4.116 17 C -0.067 4.067 18 C -0.150 4.150 19 C -0.089 4.089 20 C -0.137 4.137 21 C 0.028 3.972 22 N -0.138 5.138 23 C -0.183 4.183 24 C -0.180 4.180 25 N -0.215 5.215 26 C -0.102 4.102 27 C -0.057 4.057 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.191 0.809 43 H 0.186 0.814 44 H 0.218 0.782 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.323 2.226 22.908 23.019 hybrid contribution 1.215 -0.533 -1.504 2.005 sum 0.892 1.693 21.405 21.490 Atomic orbital electron populations 1.21780 0.97293 0.99025 1.00658 1.18245 0.93429 0.93066 0.88187 1.21775 0.98127 0.98169 1.00662 1.20889 1.32124 1.12351 0.89783 0.92536 1.24853 0.94763 0.94903 0.98791 1.69812 1.36234 1.22516 1.23473 0.86591 0.79220 0.79772 0.82033 1.20222 1.21179 1.20228 1.23741 0.98291 0.95888 0.80845 1.86565 1.68980 1.55594 1.14617 1.21080 0.77637 0.81992 0.85061 1.90792 1.35939 1.25455 1.88453 1.19297 1.02766 0.98287 0.91232 1.21727 0.92420 0.92553 0.99969 1.21192 1.01037 1.00942 0.91805 1.21247 0.94827 0.94410 0.98455 1.19761 1.02082 0.97755 0.94148 1.20709 0.91201 0.91736 0.93506 1.45639 1.20713 1.07650 1.39820 1.22799 1.03963 0.83691 1.07880 1.22305 0.94381 0.99262 1.02002 1.70289 1.29470 0.98572 1.23123 1.24956 0.86401 0.99864 0.98946 1.21108 0.96310 0.98079 0.90183 0.96531 0.89662 0.95783 0.95794 0.89670 0.96523 0.92802 0.92381 0.92387 0.83625 0.84707 0.85395 0.87650 0.87884 0.80934 0.81436 0.78171 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.11 37.16 0.30 -2.78 16 2 C 0.07 1.71 0.58 -155.66 -0.09 1.62 16 3 C -0.13 -3.05 8.11 37.15 0.30 -2.75 16 4 C -0.51 -13.56 8.01 -34.44 -0.28 -13.84 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -23.67 9.35 55.43 0.52 -23.15 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.08 1.86 4.27 37.16 0.16 2.02 16 13 O -0.34 -6.69 8.13 -40.53 -0.33 -7.02 16 14 C 0.50 8.85 7.90 34.60 0.27 9.12 16 15 O -0.52 -10.22 16.14 -19.25 -0.31 -10.53 16 16 C -0.11 -1.57 5.87 -104.99 -0.62 -2.19 16 17 C -0.05 -0.57 9.62 -39.17 -0.38 -0.95 16 18 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 19 C -0.07 -0.53 9.69 -39.49 -0.38 -0.91 16 20 C -0.14 -1.13 5.46 -104.68 -0.57 -1.70 16 21 C 0.15 0.87 6.27 -5.20 -0.03 0.84 16 22 N -0.46 -3.74 2.73 -119.87 -0.33 -4.07 16 23 C -0.05 -0.47 11.58 -16.56 -0.19 -0.66 16 24 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 25 N -0.50 -5.96 11.25 -14.66 -0.16 -6.12 16 26 C 0.18 1.63 12.56 -90.37 -1.14 0.50 16 27 C -0.04 -0.43 9.24 -39.17 -0.36 -0.79 16 28 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 29 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 33 H 0.02 0.34 7.68 -51.93 -0.40 -0.05 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.15 1.76 7.61 -52.48 -0.40 1.36 16 38 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.11 0.33 8.08 -51.93 -0.42 -0.09 16 41 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 42 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.14 1.50 7.65 -52.49 -0.40 1.10 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -31.80 380.61 -10.02 -41.82 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.41 Total: 0.59 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -3.70 Total: -12.87 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.03 Total: -33.34 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.64 Total: -17.56 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.80 -10.02 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835303614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.284 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds