Wall clock time and date at job start Tue Mar 31 2020 14:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47277 * 2 1 4 4 C 1.50708 * 109.46705 * 239.99965 * 2 1 3 5 5 H 1.07996 * 119.99979 * 240.00147 * 4 2 1 6 6 C 1.37874 * 119.99850 * 60.00161 * 4 2 1 7 7 N 1.31520 * 120.00274 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00233 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46789 * 59.99629 * 8 6 4 10 10 H 1.48496 * 109.47493 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47210 * 300.00355 * 8 6 4 12 12 C 1.52997 * 109.47229 * 120.00611 * 2 1 3 13 13 O 1.45208 * 109.46750 * 299.99530 * 12 2 1 14 14 C 1.34715 * 116.99935 * 179.97438 * 13 12 2 15 15 O 1.21473 * 119.99698 * 0.02562 * 14 13 12 16 16 C 1.47718 * 119.99836 * 179.97438 * 14 13 12 17 17 C 1.39642 * 120.15342 * 0.02562 * 16 14 13 18 18 C 1.37926 * 119.85220 * 180.02562 * 17 16 14 19 19 C 1.38386 * 120.14745 * 359.97438 * 18 17 16 20 20 C 1.38348 * 120.30440 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.92409 * 179.97438 * 20 19 18 22 22 N 1.46498 * 109.47209 * 90.00276 * 21 20 19 23 23 C 1.36881 * 126.39751 * 89.99579 * 22 21 20 24 24 C 1.34668 * 106.81875 * 180.02562 * 23 22 21 25 25 N 1.34134 * 108.01972 * 359.97438 * 24 23 22 26 26 C 1.30501 * 109.25535 * 0.02562 * 25 24 23 27 27 C 1.37962 * 120.14897 * 0.25486 * 20 19 18 28 28 H 1.09001 * 109.46733 * 299.99801 * 1 2 3 29 29 H 1.09004 * 109.47209 * 59.99468 * 1 2 3 30 30 H 1.08998 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47470 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47436 * 300.00394 * 3 2 1 33 33 H 1.08997 * 109.47149 * 59.99914 * 3 2 1 34 34 H 0.96991 * 120.00119 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47417 * 179.97438 * 12 2 1 36 36 H 1.08998 * 109.47251 * 59.99529 * 12 2 1 37 37 H 1.08005 * 120.07460 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.92748 * 179.97438 * 18 17 16 39 39 H 1.07996 * 119.84664 * 180.02562 * 19 18 17 40 40 H 1.08997 * 109.47211 * 330.00477 * 21 20 19 41 41 H 1.09004 * 109.47037 * 210.00050 * 21 20 19 42 42 H 1.08003 * 126.59103 * 359.97438 * 23 22 21 43 43 H 1.08001 * 125.99672 * 180.02562 * 24 23 22 44 44 H 1.07996 * 125.64878 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.07668 * 179.70339 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2306 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3222 -1.1195 -4.0081 9 1 1.8277 -2.5198 -4.0082 10 1 1.8266 -0.4199 -5.2205 11 1 3.8073 -1.1191 -4.0079 12 6 2.0401 -0.7214 1.2491 13 8 1.5561 -0.0369 2.4348 14 6 1.9176 -0.5491 3.6271 15 8 2.6184 -1.5402 3.6750 16 6 1.4628 0.0951 4.8762 17 6 0.6576 1.2348 4.8248 18 6 0.2370 1.8316 5.9950 19 6 0.6107 1.3030 7.2181 20 6 1.4082 0.1740 7.2764 21 6 1.8106 -0.3940 8.6129 22 7 0.8129 -1.3750 9.0469 23 6 0.8233 -2.7172 8.7786 24 6 -0.2720 -3.2399 9.3624 25 7 -0.9328 -2.2440 9.9712 26 6 -0.2890 -1.1240 9.7863 27 6 1.8408 -0.4295 6.1136 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7089 1.1615 -3.4843 35 1 3.1300 -0.7218 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 0.3649 1.6481 3.8709 38 1 -0.3854 2.7133 5.9566 39 1 0.2782 1.7739 8.1313 40 1 1.8719 0.4103 9.3460 41 1 2.7825 -0.8794 8.5238 42 1 1.5665 -3.2539 8.2075 43 1 -0.5663 -4.2788 9.3445 44 1 -0.5879 -0.1567 10.1621 45 1 2.4673 -1.3079 6.1605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835303614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:11 Heat of formation + Delta-G solvation = -16.548953 kcal Electronic energy + Delta-G solvation = -26940.226276 eV Core-core repulsion = 23116.248366 eV Total energy + Delta-G solvation = -3823.977909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.91437 -41.64151 -40.03669 -38.27725 -36.66027 -35.59189 -33.33999 -32.41125 -32.08090 -30.30949 -27.88793 -27.60625 -27.35305 -27.13434 -25.16333 -23.17369 -22.31935 -21.96430 -21.53922 -20.74943 -19.09613 -18.21071 -17.95441 -17.78798 -17.39636 -17.05601 -16.68870 -16.27772 -16.18059 -15.18129 -15.11931 -14.95817 -14.91923 -14.79861 -14.62023 -14.20613 -14.18314 -13.68741 -13.58585 -13.30794 -13.22696 -13.14352 -12.84475 -12.75406 -12.67697 -12.35732 -12.28708 -12.15784 -11.77852 -11.73090 -11.33141 -11.23951 -10.94912 -10.77903 -10.58585 -10.42514 -10.11701 -10.01616 -9.42101 -8.06917 -6.25207 -0.39531 0.14716 1.18124 1.42820 1.43199 1.43455 1.50451 1.69501 2.03141 2.27435 2.43506 2.75558 3.16483 3.52678 3.57518 3.72120 3.92407 3.93093 4.09420 4.11963 4.19376 4.21373 4.24383 4.39671 4.51956 4.54588 4.62620 4.69211 4.81344 4.83291 4.87537 5.01064 5.15627 5.18326 5.18975 5.25662 5.28555 5.35315 5.41718 5.51867 5.60568 5.62125 5.77801 5.83265 6.04590 6.14295 6.34089 6.34796 6.65189 6.79419 7.18559 7.42775 8.92657 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.002308 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.490818 B =12129.432357 C =12607.494965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.063 3.937 3 C -0.118 4.118 4 C -0.536 4.536 5 H 0.049 0.951 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.097 3.903 13 O -0.346 6.346 14 C 0.494 3.506 15 O -0.546 6.546 16 C -0.146 4.146 17 C -0.061 4.061 18 C -0.128 4.128 19 C -0.052 4.052 20 C -0.129 4.129 21 C 0.150 3.850 22 N -0.453 5.453 23 C -0.056 4.056 24 C -0.060 4.060 25 N -0.542 5.542 26 C 0.185 3.815 27 C -0.046 4.046 28 H 0.032 0.968 29 H 0.065 0.935 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.263 0.737 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.134 0.866 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.146 0.854 41 H 0.113 0.887 42 H 0.186 0.814 43 H 0.171 0.829 44 H 0.239 0.761 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 4.042 25.126 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.063 3.937 3 C -0.176 4.176 4 C -0.574 4.574 5 H 0.067 0.933 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.778 3.222 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.200 1.200 12 C 0.024 3.976 13 O -0.262 6.262 14 C 0.341 3.659 15 O -0.439 6.439 16 C -0.147 4.147 17 C -0.080 4.080 18 C -0.146 4.146 19 C -0.070 4.070 20 C -0.130 4.130 21 C 0.029 3.971 22 N -0.136 5.136 23 C -0.189 4.189 24 C -0.207 4.207 25 N -0.261 5.261 26 C -0.098 4.098 27 C -0.064 4.064 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.152 0.848 38 H 0.181 0.819 39 H 0.192 0.808 40 H 0.164 0.836 41 H 0.132 0.868 42 H 0.203 0.797 43 H 0.189 0.811 44 H 0.255 0.745 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.442 3.879 25.342 25.640 hybrid contribution 1.224 -0.995 -2.120 2.643 sum 0.782 2.883 23.221 23.413 Atomic orbital electron populations 1.21632 0.97109 0.98546 1.00392 1.18254 0.93588 0.93336 0.88541 1.21621 0.97770 0.97809 1.00418 1.21163 1.32523 1.12558 0.91186 0.93317 1.25503 0.94935 0.95561 1.01135 1.69921 1.36579 1.23179 1.23987 0.85707 0.78700 0.78722 0.79048 1.20100 1.20567 1.19964 1.23304 0.97607 0.95190 0.81508 1.86548 1.69245 1.55525 1.14832 1.21919 0.76830 0.81698 0.85461 1.90760 1.37527 1.26921 1.88683 1.19182 1.05657 1.00050 0.89794 1.21752 0.92820 0.92374 1.01050 1.21540 1.00570 1.01381 0.91085 1.21801 0.92433 0.93159 0.99634 1.20036 1.01196 0.97611 0.94152 1.20993 0.90813 0.92401 0.92851 1.45756 1.20973 1.07467 1.39369 1.23048 1.03744 0.84608 1.07522 1.22558 0.95320 0.99779 1.03016 1.70247 1.31141 0.99911 1.24778 1.25670 0.85811 1.00426 0.97855 1.21203 0.96605 0.98211 0.90425 0.94891 0.91616 0.96318 0.96134 0.91662 0.94803 0.92745 0.93145 0.93401 0.84800 0.81869 0.80846 0.83600 0.86833 0.79702 0.81139 0.74529 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.11 71.98 0.58 -5.15 16 2 C 0.06 3.11 0.58 -52.93 -0.03 3.08 16 3 C -0.12 -5.65 8.11 71.98 0.58 -5.07 16 4 C -0.54 -28.91 8.01 25.60 0.21 -28.71 16 5 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 6 C 0.03 1.54 5.15 84.65 0.44 1.98 16 7 N -0.90 -48.72 9.35 21.45 0.20 -48.52 16 8 Si 0.95 42.59 29.54 68.60 2.03 44.61 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 12 C 0.10 4.40 4.27 71.98 0.31 4.71 16 13 O -0.35 -13.90 8.13 -56.24 -0.46 -14.36 16 14 C 0.49 18.12 7.90 70.33 0.56 18.67 16 15 O -0.55 -22.57 16.14 19.92 0.32 -22.25 16 16 C -0.15 -3.97 5.87 -20.10 -0.12 -4.09 16 17 C -0.06 -1.38 9.62 22.54 0.22 -1.16 16 18 C -0.13 -1.78 10.03 22.23 0.22 -1.56 16 19 C -0.05 -0.51 9.69 22.33 0.22 -0.30 16 20 C -0.13 -1.66 5.46 -19.90 -0.11 -1.77 16 21 C 0.15 1.06 6.27 85.63 0.54 1.60 16 22 N -0.45 -5.98 2.73 -533.15 -1.46 -7.44 16 23 C -0.06 -0.96 11.58 83.09 0.96 0.00 16 24 C -0.06 -1.26 11.87 83.52 0.99 -0.27 16 25 N -0.54 -12.26 11.25 -200.31 -2.25 -14.51 16 26 C 0.18 2.72 12.56 180.26 2.26 4.98 16 27 C -0.05 -0.97 9.24 22.54 0.21 -0.76 16 28 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 29 H 0.07 3.42 6.07 -2.38 -0.01 3.41 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 3.38 6.07 -2.38 -0.01 3.36 16 33 H 0.03 1.44 7.68 -2.39 -0.02 1.42 16 34 H 0.26 13.64 8.31 -92.72 -0.77 12.87 16 35 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.13 3.22 7.61 -2.91 -0.02 3.20 16 38 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 40 H 0.15 -0.06 8.08 -2.39 -0.02 -0.07 16 41 H 0.11 0.64 8.08 -2.38 -0.02 0.62 16 42 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 44 H 0.24 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.13 2.83 7.65 -2.91 -0.02 2.81 16 Total: -1.00 -71.79 380.61 7.40 -64.39 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.98 Total: 11.89 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 8.03 Total: -13.82 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -3.51 Total: -70.47 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.14 Total: -36.61 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -71.79 7.40 -64.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835303614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.840 kcal (2) G-P(sol) polarization free energy of solvation -71.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds