Wall clock time and date at job start Tue Mar 31 2020 15:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34727 * 117.00622 * 270.00300 * 13 3 2 15 15 O 1.21494 * 119.99797 * 0.02562 * 14 13 3 16 16 C 1.47579 * 120.00522 * 179.97438 * 14 13 3 17 17 C 1.41541 * 126.52575 * 179.71255 * 16 14 13 18 18 C 1.35347 * 105.50321 * 179.87908 * 17 16 14 19 19 N 1.35047 * 107.24074 * 0.37660 * 18 17 16 20 20 C 1.46501 * 124.87774 * 179.72248 * 19 18 17 21 21 C 1.53010 * 109.46639 * 125.00671 * 20 19 18 22 22 C 1.50696 * 109.46947 * 180.02562 * 21 20 19 23 23 C 1.38241 * 119.99955 * 269.72463 * 22 21 20 24 24 C 1.38231 * 120.00040 * 179.76649 * 23 22 21 25 25 C 1.38230 * 119.99872 * 0.50707 * 24 23 22 26 26 C 1.38235 * 120.00114 * 359.74947 * 25 24 23 27 27 C 1.38230 * 120.00095 * 89.99820 * 22 21 20 28 28 N 1.28464 * 110.23757 * 359.75533 * 19 18 17 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 35 35 H 1.08005 * 127.25352 * 359.97438 * 17 16 14 36 36 H 1.08006 * 126.38014 * 180.09361 * 18 17 16 37 37 H 1.08997 * 109.47234 * 245.00020 * 20 19 18 38 38 H 1.08994 * 109.47445 * 5.01103 * 20 19 18 39 39 H 1.08997 * 109.46832 * 300.00184 * 21 20 19 40 40 H 1.09002 * 109.46747 * 59.99802 * 21 20 19 41 41 H 1.08005 * 119.99574 * 359.97438 * 23 22 21 42 42 H 1.07998 * 119.99758 * 180.23168 * 24 23 22 43 43 H 1.08007 * 120.00000 * 179.71839 * 25 24 23 44 44 H 1.07999 * 119.99855 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00180 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4683 2.7277 1.2561 15 8 -0.2275 2.7394 0.2603 16 6 0.0122 3.4095 2.4830 17 6 -1.2003 4.1202 2.6506 18 6 -1.1856 4.5642 3.9291 19 7 -0.0270 4.1480 4.4841 20 6 0.3881 4.4225 5.8620 21 6 0.7062 3.1043 6.5709 22 6 1.1325 3.3866 7.9885 23 6 2.4679 3.5923 8.2807 24 6 2.8585 3.8560 9.5802 25 6 1.9149 3.9036 10.5893 26 6 0.5801 3.6926 10.2980 27 6 0.1889 3.4342 8.9975 28 7 0.6592 3.4773 3.6298 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8292 -0.0609 -2.9500 35 1 -1.9750 4.2743 1.9140 36 1 -1.9550 5.1471 4.4137 37 1 1.2760 5.0546 5.8549 38 1 -0.4176 4.9333 6.3892 39 1 -0.1817 2.4721 6.5779 40 1 1.5119 2.5935 6.0436 41 1 3.2057 3.5503 7.4930 42 1 3.9013 4.0204 9.8078 43 1 2.2205 4.1051 11.6054 44 1 -0.1570 3.7294 11.0864 45 1 -0.8538 3.2687 8.7701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835338899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:11 Heat of formation + Delta-G solvation = 9.633872 kcal Electronic energy + Delta-G solvation = -26726.380347 eV Core-core repulsion = 22903.537810 eV Total energy + Delta-G solvation = -3822.842537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.55568 -39.65105 -39.19769 -35.71822 -35.15491 -33.40429 -32.14001 -31.26383 -31.23851 -30.65155 -28.72795 -27.22820 -25.22011 -23.40820 -22.93150 -22.58087 -21.37221 -21.22815 -20.21684 -19.23148 -17.69343 -17.15938 -16.64688 -16.42686 -16.15559 -15.61990 -15.41933 -15.22781 -14.91654 -14.42365 -14.18359 -13.75743 -13.50284 -13.46185 -13.34394 -13.00518 -12.91917 -12.71402 -12.37445 -12.01805 -11.73571 -11.41064 -11.38588 -11.25452 -11.23494 -11.11613 -10.88654 -10.66843 -10.57700 -10.22629 -9.78833 -9.63571 -9.29020 -9.27614 -9.23171 -9.12018 -8.90173 -8.72140 -8.37783 -6.11337 -4.17561 0.94815 1.05068 1.80620 2.23050 2.40855 3.31357 3.34251 3.37024 3.41316 3.74725 3.82859 4.22093 4.39530 4.41438 4.52576 4.62926 4.70025 4.77126 4.81438 4.88508 5.01176 5.16001 5.17499 5.20440 5.44416 5.54577 5.62581 5.71114 5.79243 5.80804 5.95376 6.10653 6.17424 6.26570 6.31405 6.38547 6.48315 6.57794 6.64614 6.79356 6.96415 7.04932 7.25525 7.32273 7.68826 7.81753 7.95430 8.07059 8.23859 8.73942 8.99003 9.46937 10.95581 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.002665 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.800783 B =10505.950083 C =12056.015975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.048 0.952 5 C -0.518 4.518 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.339 6.339 14 C 0.541 3.459 15 O -0.509 6.509 16 C 0.009 3.991 17 C -0.179 4.179 18 C -0.026 4.026 19 N -0.288 5.288 20 C 0.130 3.870 21 C -0.096 4.096 22 C -0.083 4.083 23 C -0.110 4.110 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.115 4.115 28 N -0.232 5.232 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.266 0.734 35 H 0.163 0.837 36 H 0.181 0.819 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.054 8.768 23.846 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.556 4.556 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.254 6.254 14 C 0.383 3.617 15 O -0.397 6.397 16 C -0.150 4.150 17 C -0.206 4.206 18 C -0.168 4.168 19 N -0.077 5.077 20 C 0.010 3.990 21 C -0.134 4.134 22 C -0.084 4.084 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.138 4.138 27 C -0.133 4.133 28 N -0.068 5.068 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.181 0.819 36 H 0.198 0.802 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.178 8.328 23.954 26.357 hybrid contribution 0.089 0.211 -0.502 0.552 sum -7.089 8.539 23.452 25.946 Atomic orbital electron populations 1.21866 0.98383 0.98988 1.00819 1.22015 0.92650 0.99322 1.03338 1.20719 0.95049 0.88813 0.78615 0.93427 1.21009 0.89680 1.38787 1.06158 0.91356 1.24872 0.99149 0.94847 0.95078 1.69881 1.35385 1.37942 1.09476 0.86347 0.84028 0.78444 0.77385 1.19963 1.21080 1.20035 1.86621 1.33096 1.61913 1.43788 1.19487 0.81031 0.76227 0.84995 1.90796 1.55922 1.59039 1.33928 1.21259 0.95585 1.05707 0.92434 1.21773 0.99169 1.02970 0.96687 1.22814 0.92513 1.06378 0.95094 1.45675 1.13527 1.37512 1.10990 1.21973 1.02715 0.98425 0.75886 1.20884 1.04058 0.96551 0.91875 1.19689 0.93718 1.00366 0.94595 1.21202 0.95561 0.99026 0.97038 1.21199 0.99728 0.99716 0.92962 1.21196 0.93349 1.00193 0.99306 1.21150 0.96187 0.99974 0.96531 1.21091 0.99282 1.00199 0.92746 1.73752 1.21588 1.12126 0.99319 0.94908 0.94837 0.92750 0.93966 0.87311 0.92397 0.81941 0.80231 0.88682 0.87884 0.90027 0.88528 0.85506 0.85884 0.86129 0.86045 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.56 37.16 0.32 -2.97 16 2 C -0.14 -3.49 5.49 -26.73 -0.15 -3.64 16 3 C 0.22 6.11 2.25 -27.89 -0.06 6.05 16 4 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 5 C -0.52 -14.99 8.90 -34.44 -0.31 -15.30 16 6 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.56 11.29 55.43 0.63 -24.93 16 9 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 O -0.34 -8.76 9.81 -40.56 -0.40 -9.15 16 14 C 0.54 12.55 6.42 34.54 0.22 12.77 16 15 O -0.51 -12.49 14.11 -19.26 -0.27 -12.76 16 16 C 0.01 0.17 7.17 -82.79 -0.59 -0.42 16 17 C -0.18 -2.63 10.81 -39.35 -0.43 -3.06 16 18 C -0.03 -0.29 11.40 -17.17 -0.20 -0.49 16 19 N -0.29 -3.60 3.41 -61.33 -0.21 -3.80 16 20 C 0.13 1.08 6.38 -4.04 -0.03 1.05 16 21 C -0.10 -0.84 5.45 -27.88 -0.15 -0.99 16 22 C -0.08 -0.67 5.13 -104.63 -0.54 -1.21 16 23 C -0.11 -0.92 9.70 -39.58 -0.38 -1.30 16 24 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 25 C -0.12 -0.84 10.05 -39.59 -0.40 -1.24 16 26 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 27 C -0.12 -0.83 9.70 -39.58 -0.38 -1.21 16 28 N -0.23 -4.01 11.68 33.41 0.39 -3.62 16 29 H 0.03 0.74 6.06 -51.93 -0.31 0.42 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 1.29 7.79 -51.93 -0.40 0.88 16 32 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.11 3.00 5.95 -51.93 -0.31 2.69 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.16 2.16 8.06 -52.48 -0.42 1.73 16 36 H 0.18 1.15 8.06 -52.48 -0.42 0.72 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.53 8.04 -51.93 -0.42 0.11 16 39 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.10 1.06 8.03 -51.93 -0.42 0.64 16 41 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.60 8.06 -52.48 -0.42 0.17 16 44 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -33.80 382.01 -9.51 -43.31 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.43 Total: 1.48 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -3.96 Total: -12.80 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.81 Total: -32.36 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.67 Total: -21.91 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.80 -9.51 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835338899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.945 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds