Wall clock time and date at job start Tue Mar 31 2020 15:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34727 * 117.00622 * 270.00300 * 13 3 2 15 15 O 1.21494 * 119.99797 * 0.02562 * 14 13 3 16 16 C 1.47579 * 120.00522 * 179.97438 * 14 13 3 17 17 C 1.41541 * 126.52575 * 179.71255 * 16 14 13 18 18 C 1.35347 * 105.50321 * 179.87908 * 17 16 14 19 19 N 1.35047 * 107.24074 * 0.37660 * 18 17 16 20 20 C 1.46501 * 124.87774 * 179.72248 * 19 18 17 21 21 C 1.53010 * 109.46639 * 125.00671 * 20 19 18 22 22 C 1.50696 * 109.46947 * 180.02562 * 21 20 19 23 23 C 1.38241 * 119.99955 * 269.72463 * 22 21 20 24 24 C 1.38231 * 120.00040 * 179.76649 * 23 22 21 25 25 C 1.38230 * 119.99872 * 0.50707 * 24 23 22 26 26 C 1.38235 * 120.00114 * 359.74947 * 25 24 23 27 27 C 1.38230 * 120.00095 * 89.99820 * 22 21 20 28 28 N 1.28464 * 110.23757 * 359.75533 * 19 18 17 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 35 35 H 1.08005 * 127.25352 * 359.97438 * 17 16 14 36 36 H 1.08006 * 126.38014 * 180.09361 * 18 17 16 37 37 H 1.08997 * 109.47234 * 245.00020 * 20 19 18 38 38 H 1.08994 * 109.47445 * 5.01103 * 20 19 18 39 39 H 1.08997 * 109.46832 * 300.00184 * 21 20 19 40 40 H 1.09002 * 109.46747 * 59.99802 * 21 20 19 41 41 H 1.08005 * 119.99574 * 359.97438 * 23 22 21 42 42 H 1.07998 * 119.99758 * 180.23168 * 24 23 22 43 43 H 1.08007 * 120.00000 * 179.71839 * 25 24 23 44 44 H 1.07999 * 119.99855 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00180 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4683 2.7277 1.2561 15 8 -0.2275 2.7394 0.2603 16 6 0.0122 3.4095 2.4830 17 6 -1.2003 4.1202 2.6506 18 6 -1.1856 4.5642 3.9291 19 7 -0.0270 4.1480 4.4841 20 6 0.3881 4.4225 5.8620 21 6 0.7062 3.1043 6.5709 22 6 1.1325 3.3866 7.9885 23 6 2.4679 3.5923 8.2807 24 6 2.8585 3.8560 9.5802 25 6 1.9149 3.9036 10.5893 26 6 0.5801 3.6926 10.2980 27 6 0.1889 3.4342 8.9975 28 7 0.6592 3.4773 3.6298 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8292 -0.0609 -2.9500 35 1 -1.9750 4.2743 1.9140 36 1 -1.9550 5.1471 4.4137 37 1 1.2760 5.0546 5.8549 38 1 -0.4176 4.9333 6.3892 39 1 -0.1817 2.4721 6.5779 40 1 1.5119 2.5935 6.0436 41 1 3.2057 3.5503 7.4930 42 1 3.9013 4.0204 9.8078 43 1 2.2205 4.1051 11.6054 44 1 -0.1570 3.7294 11.0864 45 1 -0.8538 3.2687 8.7701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835338899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:09 Heat of formation + Delta-G solvation = -8.411283 kcal Electronic energy + Delta-G solvation = -26727.162844 eV Core-core repulsion = 22903.537810 eV Total energy + Delta-G solvation = -3823.625034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.68305 -41.11040 -40.18106 -37.62557 -36.00104 -35.49310 -33.42738 -32.93568 -31.79171 -31.74417 -29.73028 -29.16141 -26.44268 -25.15082 -23.97185 -23.45472 -22.41165 -22.18585 -21.76957 -20.92790 -19.10094 -18.45753 -18.18995 -17.70795 -17.32497 -17.04434 -16.72176 -16.31198 -16.19096 -15.87902 -14.97661 -14.91939 -14.83524 -14.44085 -14.28384 -14.17707 -14.08788 -13.86566 -13.72257 -13.39108 -13.31137 -13.14767 -12.99971 -12.81430 -12.56899 -12.42165 -12.15405 -11.96142 -11.90466 -11.80009 -11.73763 -11.57449 -11.39786 -10.84212 -10.54316 -10.32659 -10.12087 -9.80825 -9.62218 -8.27780 -6.44643 0.32849 0.44022 0.51377 1.17413 1.38599 1.43309 1.44545 1.52897 2.10246 2.20532 2.42993 2.86592 3.01055 3.35061 3.78011 3.83041 3.94188 3.99487 4.08501 4.19608 4.25638 4.31810 4.35001 4.36445 4.38343 4.53523 4.57089 4.65001 4.71001 4.71431 4.82841 4.85566 4.95186 5.06546 5.15551 5.19177 5.20576 5.26595 5.37453 5.49430 5.58699 5.64981 5.65282 5.69838 5.87855 5.93045 6.09057 6.12797 6.57263 6.78309 7.06068 7.26590 8.79189 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.002665 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.800783 B =10505.950083 C =12056.015975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.009 0.991 5 C -0.552 4.552 6 H 0.060 0.940 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.982 3.018 10 H -0.265 1.265 11 H -0.273 1.273 12 H -0.270 1.270 13 O -0.355 6.355 14 C 0.535 3.465 15 O -0.534 6.534 16 C -0.035 4.035 17 C -0.194 4.194 18 C 0.011 3.989 19 N -0.274 5.274 20 C 0.123 3.877 21 C -0.088 4.088 22 C -0.090 4.090 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.117 4.117 28 N -0.262 5.262 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.272 0.728 35 H 0.172 0.828 36 H 0.242 0.758 37 H 0.098 0.902 38 H 0.151 0.849 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.075 9.899 26.741 29.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.079 0.921 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.804 3.196 10 H -0.190 1.190 11 H -0.197 1.197 12 H -0.195 1.195 13 O -0.270 6.270 14 C 0.379 3.621 15 O -0.423 6.423 16 C -0.191 4.191 17 C -0.222 4.222 18 C -0.131 4.131 19 N -0.063 5.063 20 C 0.005 3.995 21 C -0.126 4.126 22 C -0.091 4.091 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.142 4.142 27 C -0.135 4.135 28 N -0.101 5.101 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.189 0.811 36 H 0.258 0.742 37 H 0.116 0.884 38 H 0.169 0.831 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.137 0.863 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.162 0.838 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.209 9.460 26.860 29.637 hybrid contribution 0.350 -0.064 -1.242 1.292 sum -7.859 9.395 25.618 28.395 Atomic orbital electron populations 1.21710 0.96205 1.00706 1.00045 1.21859 0.94560 0.97905 1.02279 1.20460 0.94693 0.89419 0.78364 0.97280 1.21255 0.90414 1.40288 1.06978 0.92144 1.25798 1.04360 0.93750 0.94194 1.69995 1.37514 1.37713 1.09780 0.85260 0.77529 0.78762 0.78001 1.18979 1.19747 1.19496 1.86608 1.35025 1.62721 1.42638 1.20215 0.79770 0.75602 0.86536 1.90752 1.56173 1.60029 1.35361 1.20962 0.98060 1.08353 0.91695 1.22037 0.98030 1.03283 0.98845 1.23620 0.92183 1.03904 0.93394 1.46131 1.13375 1.35294 1.11544 1.22430 1.04829 0.98430 0.73785 1.20740 1.02976 0.96678 0.92210 1.19633 0.93857 1.01223 0.94371 1.21295 0.95888 1.00155 0.97488 1.21407 1.00679 0.99799 0.92835 1.21506 0.93480 0.99538 1.00051 1.21483 0.96625 0.99092 0.97006 1.21326 1.00005 0.99606 0.92591 1.73666 1.22972 1.13776 0.99643 0.95016 0.91710 0.94130 0.93957 0.89116 0.91878 0.81100 0.74160 0.88366 0.83142 0.89759 0.91694 0.86338 0.84895 0.84236 0.83824 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.56 71.98 0.62 -5.49 16 2 C -0.13 -6.90 5.49 30.59 0.17 -6.73 16 3 C 0.22 13.16 2.25 29.85 0.07 13.22 16 4 H 0.01 0.61 7.16 -2.39 -0.02 0.59 16 5 C -0.55 -33.36 8.90 25.60 0.23 -33.13 16 6 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 7 C 0.02 1.09 5.29 84.66 0.45 1.53 16 8 N -0.91 -53.84 11.29 21.45 0.24 -53.59 16 9 Si 0.98 44.66 29.54 68.60 2.03 46.68 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 O -0.35 -19.46 9.81 -56.37 -0.55 -20.02 16 14 C 0.53 26.24 6.42 70.29 0.45 26.69 16 15 O -0.53 -27.76 14.11 19.86 0.28 -27.48 16 16 C -0.03 -1.36 7.17 42.42 0.30 -1.05 16 17 C -0.19 -5.50 10.81 22.42 0.24 -5.25 16 18 C 0.01 0.20 11.40 83.53 0.95 1.16 16 19 N -0.27 -6.22 3.41 -347.94 -1.19 -7.40 16 20 C 0.12 1.69 6.38 86.38 0.55 2.24 16 21 C -0.09 -1.45 5.45 29.85 0.16 -1.28 16 22 C -0.09 -1.34 5.13 -19.87 -0.10 -1.44 16 23 C -0.13 -2.13 9.70 22.27 0.22 -1.91 16 24 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 25 C -0.13 -1.48 10.05 22.27 0.22 -1.26 16 26 C -0.12 -1.32 10.05 22.27 0.22 -1.09 16 27 C -0.12 -1.35 9.70 22.27 0.22 -1.14 16 28 N -0.26 -9.14 11.68 -48.23 -0.56 -9.70 16 29 H 0.03 1.47 6.06 -2.39 -0.01 1.45 16 30 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.04 1.99 7.79 -2.38 -0.02 1.97 16 32 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.09 5.22 5.95 -2.39 -0.01 5.20 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.17 4.38 8.06 -2.91 -0.02 4.35 16 36 H 0.24 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.15 0.71 8.04 -2.39 -0.02 0.69 16 39 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 40 H 0.06 1.48 8.03 -2.39 -0.02 1.46 16 41 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.13 1.46 8.06 -2.91 -0.02 1.43 16 43 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 44 H 0.14 0.84 8.06 -2.91 -0.02 0.82 16 45 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -79.24 382.01 6.42 -72.81 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.98 Total: 15.22 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 5.19 Total: -16.52 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -1.51 Total: -70.69 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -0.27 Total: -47.50 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -79.24 6.42 -72.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835338899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.402 kcal (2) G-P(sol) polarization free energy of solvation -79.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds