Wall clock time and date at job start Tue Mar 31 2020 14:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47077 * 2 1 4 4 C 1.52993 * 109.47290 * 239.99599 * 2 1 3 5 5 O 1.45199 * 109.47317 * 60.00348 * 4 2 1 6 6 C 1.34228 * 116.99912 * 179.97438 * 5 4 2 7 7 O 1.20826 * 120.00169 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99713 * 179.97438 * 6 5 4 9 9 C 1.50704 * 109.47161 * 180.02562 * 8 6 5 10 10 C 1.37637 * 120.12510 * 265.00431 * 9 8 6 11 11 C 1.38618 * 120.24542 * 179.97438 * 10 9 8 12 12 C 1.38655 * 120.50007 * 0.02562 * 11 10 9 13 13 C 1.37593 * 120.25002 * 0.02562 * 12 11 10 14 14 C 1.40697 * 120.12656 * 84.72778 * 9 8 6 15 15 C 1.41397 * 120.24568 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00001 * 333.90808 * 15 14 9 17 17 C 1.39942 * 119.99830 * 153.90011 * 15 14 9 18 18 N 1.30822 * 120.00372 * 343.71052 * 17 15 14 19 19 Si 1.86799 * 119.99987 * 163.70936 * 17 15 14 20 20 H 1.48507 * 109.46975 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47345 * 120.00123 * 19 17 15 22 22 H 1.48502 * 109.47262 * 240.00084 * 19 17 15 23 23 N 1.46504 * 109.46879 * 119.99522 * 2 1 3 24 24 C 1.34947 * 126.03808 * 284.71558 * 23 2 1 25 25 C 1.35318 * 107.74886 * 179.83851 * 24 23 2 26 26 C 1.39872 * 107.91416 * 0.42676 * 25 24 23 27 27 N 1.30835 * 108.20745 * 359.73533 * 26 25 24 28 28 H 1.09005 * 109.46742 * 60.00624 * 1 2 3 29 29 H 1.08993 * 109.47285 * 300.00783 * 1 2 3 30 30 H 1.09002 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47531 * 59.99990 * 3 2 1 32 32 H 1.09005 * 109.47247 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46869 * 299.99204 * 3 2 1 34 34 H 1.09005 * 109.47041 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47443 * 300.00103 * 4 2 1 36 36 H 1.09002 * 109.47239 * 300.00344 * 8 6 5 37 37 H 1.09004 * 109.47090 * 60.00659 * 8 6 5 38 38 H 1.07999 * 119.88113 * 359.97438 * 10 9 8 39 39 H 1.07998 * 119.74697 * 179.97438 * 11 10 9 40 40 H 1.08005 * 119.87034 * 179.97438 * 12 11 10 41 41 H 1.08004 * 120.12753 * 179.97438 * 13 12 11 42 42 H 0.96995 * 120.00539 * 179.97438 * 18 17 15 43 43 H 1.08005 * 126.12540 * 0.02562 * 24 23 2 44 44 H 1.07997 * 126.04328 * 180.16312 * 25 24 23 45 45 H 1.07999 * 125.89765 * 179.71672 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 1.5561 -0.0369 -2.4348 6 6 1.9173 -0.5468 -3.6227 7 8 2.6143 -1.5326 -3.6704 8 6 1.4525 0.1097 -4.8971 9 6 1.9915 -0.6523 -6.0803 10 6 3.1596 -0.2501 -6.6871 11 6 3.6579 -0.9495 -7.7752 12 6 2.9873 -2.0598 -8.2652 13 6 1.8173 -2.4792 -7.6749 14 6 1.3056 -1.7810 -6.5653 15 6 0.1081 -2.2072 -5.9460 16 1 -0.0733 -1.9782 -4.9062 17 6 -0.8422 -2.9255 -6.6804 18 7 -0.7898 -2.9329 -7.9876 19 14 -2.1855 -3.8740 -5.7943 20 1 -2.0254 -3.7054 -4.3275 21 1 -3.5137 -3.3557 -6.2095 22 1 -2.0858 -5.3144 -6.1412 23 7 2.0183 -0.6905 1.1963 24 6 2.0216 -0.1969 2.4522 25 6 2.5482 -1.1416 3.2654 26 6 2.8871 -2.2468 2.4779 27 7 2.5699 -1.9776 1.2375 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 0.5139 0.8898 30 1 -0.3633 -1.0277 0.0005 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4426 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 3.1301 -0.7209 -1.2493 35 1 1.6767 -1.7490 -1.2491 36 1 0.3630 0.1083 -4.9301 37 1 1.8157 1.1370 -4.9301 38 1 3.6900 0.6136 -6.3141 39 1 4.5749 -0.6266 -8.2455 40 1 3.3845 -2.5970 -9.1138 41 1 1.2963 -3.3441 -8.0584 42 1 -1.4482 -3.4310 -8.4966 43 1 1.6647 0.7766 2.7547 44 1 2.6867 -1.0556 4.3330 45 1 3.3337 -3.1639 2.8326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851307324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:10 Heat of formation + Delta-G solvation = 6.890313 kcal Electronic energy + Delta-G solvation = -27624.904709 eV Core-core repulsion = 23801.943202 eV Total energy + Delta-G solvation = -3822.961507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44035 -39.98150 -37.81740 -36.89692 -35.21982 -33.67614 -31.87665 -30.59174 -29.91145 -29.52025 -27.72247 -27.67707 -26.35627 -25.03757 -22.83812 -21.31067 -20.98305 -20.80642 -19.52020 -19.39971 -17.46994 -17.19924 -16.69895 -16.25712 -15.88027 -15.34664 -15.17777 -14.60402 -14.53399 -14.12358 -14.01427 -13.73951 -13.62152 -13.35918 -12.87909 -12.66202 -12.57197 -12.51403 -12.26459 -12.23083 -11.84526 -11.61108 -11.60136 -11.27931 -11.22199 -11.11422 -11.02665 -10.74432 -10.64504 -10.42287 -10.31905 -9.78743 -9.54947 -9.53938 -9.42942 -9.20782 -8.75815 -7.39228 -7.36188 -6.78730 -4.40738 1.78147 2.13460 2.68917 2.73955 2.85387 2.92483 3.06086 3.11581 3.22981 3.29807 3.91109 4.25015 4.44475 4.55876 4.61792 4.63443 4.82410 5.22320 5.26035 5.35155 5.42048 5.44098 5.51284 5.57144 5.61988 5.68114 5.74559 5.85179 5.86502 5.93759 5.96031 6.05756 6.23403 6.36217 6.46178 6.53107 6.70817 6.88793 6.91153 7.03658 7.23940 7.36117 7.58765 7.60138 7.85612 8.00197 8.07706 8.25040 8.42116 8.59666 8.85416 8.94879 10.15229 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.003312 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.592377 B = 8451.405326 C = 9576.774342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.188 3.812 3 C -0.156 4.156 4 C 0.078 3.922 5 O -0.366 6.366 6 C 0.459 3.541 7 O -0.486 6.486 8 C -0.039 4.039 9 C -0.196 4.196 10 C -0.076 4.076 11 C -0.240 4.240 12 C -0.104 4.104 13 C -0.158 4.158 14 C 0.131 3.869 15 C -0.457 4.457 16 H 0.074 0.926 17 C 0.078 3.922 18 N -0.792 5.792 19 Si 0.903 3.097 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.271 1.271 23 N -0.361 5.361 24 C 0.059 3.941 25 C -0.278 4.278 26 C 0.042 3.958 27 N -0.292 5.292 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.280 0.720 43 H 0.171 0.829 44 H 0.146 0.854 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 7.762 17.004 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.105 3.895 3 C -0.215 4.215 4 C 0.003 3.997 5 O -0.284 6.284 6 C 0.301 3.699 7 O -0.370 6.370 8 C -0.076 4.076 9 C -0.198 4.198 10 C -0.095 4.095 11 C -0.259 4.259 12 C -0.122 4.122 13 C -0.177 4.177 14 C 0.128 3.872 15 C -0.487 4.487 16 H 0.092 0.908 17 C -0.140 4.140 18 N -0.417 5.417 19 Si 0.727 3.273 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.196 1.196 23 N -0.145 5.145 24 C -0.087 4.087 25 C -0.307 4.307 26 C -0.144 4.144 27 N -0.113 5.113 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.091 0.909 43 H 0.188 0.812 44 H 0.164 0.836 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.900 6.995 15.458 16.991 hybrid contribution -0.469 -0.386 1.343 1.474 sum 0.431 6.609 16.801 18.059 Atomic orbital electron populations 1.22245 0.91863 1.03721 1.03686 1.20537 0.95275 0.91867 0.81848 1.22227 1.02179 0.92999 1.04050 1.22667 0.99500 0.96223 0.81334 1.86423 1.70946 1.56221 1.14823 1.24549 0.77737 0.83297 0.84311 1.90670 1.34556 1.24743 1.87044 1.19987 1.03269 0.98114 0.86224 1.19044 1.00284 1.00123 1.00341 1.20323 0.94909 0.98122 0.96119 1.20321 1.02015 1.01419 1.02149 1.20707 0.96090 0.96761 0.98673 1.21314 0.95560 1.01461 0.99380 1.17354 0.91142 0.88118 0.90579 1.19519 1.01014 1.30396 0.97747 0.90777 1.25875 0.98811 0.94689 0.94599 1.69816 1.32819 1.32559 1.06484 0.86345 0.80031 0.79936 0.80988 1.18461 1.19870 1.19607 1.48886 1.47469 1.11982 1.06187 1.22416 1.01463 1.00251 0.84618 1.21492 1.13139 0.95263 1.00841 1.23913 1.00114 0.99889 0.90527 1.77462 1.17198 0.95529 1.21083 0.89005 0.91807 0.91554 0.91564 0.91598 0.88788 0.90827 0.89925 0.87393 0.89336 0.89550 0.89488 0.89422 0.86392 0.90872 0.81211 0.83628 0.80133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.59 37.16 0.32 -1.35 16 2 C 0.19 2.21 1.07 -131.82 -0.14 2.06 16 3 C -0.16 -1.43 8.14 37.16 0.30 -1.13 16 4 C 0.08 1.20 3.93 37.15 0.15 1.35 16 5 O -0.37 -5.99 8.88 -39.25 -0.35 -6.34 16 6 C 0.46 9.18 7.57 36.01 0.27 9.45 16 7 O -0.49 -11.62 15.78 -18.75 -0.30 -11.92 16 8 C -0.04 -0.75 5.29 -29.03 -0.15 -0.91 16 9 C -0.20 -4.66 4.43 -103.91 -0.46 -5.12 16 10 C -0.08 -1.73 9.66 -39.66 -0.38 -2.12 16 11 C -0.24 -5.50 10.05 -39.29 -0.39 -5.90 16 12 C -0.10 -2.50 10.02 -39.66 -0.40 -2.90 16 13 C -0.16 -4.18 8.69 -38.87 -0.34 -4.51 16 14 C 0.13 3.45 5.56 -106.82 -0.59 2.86 16 15 C -0.46 -11.94 8.14 -37.74 -0.31 -12.24 16 16 H 0.07 1.89 6.67 -52.49 -0.35 1.54 16 17 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 18 N -0.79 -20.19 10.96 55.55 0.61 -19.58 16 19 Si 0.90 18.82 29.59 -169.99 -5.03 13.79 16 20 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 N -0.36 -4.43 3.43 -48.65 -0.17 -4.60 16 24 C 0.06 0.56 10.60 -17.22 -0.18 0.38 16 25 C -0.28 -2.66 10.80 -40.01 -0.43 -3.09 16 26 C 0.04 0.47 12.03 -17.36 -0.21 0.26 16 27 N -0.29 -4.19 11.66 30.62 0.36 -3.84 16 28 H 0.09 0.95 7.68 -51.93 -0.40 0.56 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.45 7.36 -51.93 -0.38 0.06 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.84 7.68 -51.93 -0.40 0.45 16 34 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 35 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 36 H 0.11 2.07 7.08 -51.93 -0.37 1.70 16 37 H 0.09 1.42 8.05 -51.93 -0.42 1.01 16 38 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 41 H 0.12 3.20 6.20 -52.48 -0.33 2.88 16 42 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 43 H 0.17 1.04 7.54 -52.48 -0.40 0.65 16 44 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -31.31 378.82 -8.60 -39.91 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.39 Total: 7.90 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -3.04 Total: -21.04 kcal Atomic # 7 Polarization: -28.81 SS G_CDS: 0.80 Total: -28.01 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.64 Total: -18.26 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.31 -8.60 -39.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851307324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.800 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds