Wall clock time and date at job start Tue Mar 31 2020 14:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47077 * 2 1 4 4 C 1.52993 * 109.47290 * 239.99599 * 2 1 3 5 5 O 1.45199 * 109.47317 * 60.00348 * 4 2 1 6 6 C 1.34228 * 116.99912 * 179.97438 * 5 4 2 7 7 O 1.20826 * 120.00169 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99713 * 179.97438 * 6 5 4 9 9 C 1.50704 * 109.47161 * 180.02562 * 8 6 5 10 10 C 1.37637 * 120.12510 * 265.00431 * 9 8 6 11 11 C 1.38618 * 120.24542 * 179.97438 * 10 9 8 12 12 C 1.38655 * 120.50007 * 0.02562 * 11 10 9 13 13 C 1.37593 * 120.25002 * 0.02562 * 12 11 10 14 14 C 1.40697 * 120.12656 * 84.72778 * 9 8 6 15 15 C 1.41397 * 120.24568 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00001 * 333.90808 * 15 14 9 17 17 C 1.39942 * 119.99830 * 153.90011 * 15 14 9 18 18 N 1.30822 * 120.00372 * 343.71052 * 17 15 14 19 19 Si 1.86799 * 119.99987 * 163.70936 * 17 15 14 20 20 H 1.48507 * 109.46975 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47345 * 120.00123 * 19 17 15 22 22 H 1.48502 * 109.47262 * 240.00084 * 19 17 15 23 23 N 1.46504 * 109.46879 * 119.99522 * 2 1 3 24 24 C 1.34947 * 126.03808 * 284.71558 * 23 2 1 25 25 C 1.35318 * 107.74886 * 179.83851 * 24 23 2 26 26 C 1.39872 * 107.91416 * 0.42676 * 25 24 23 27 27 N 1.30835 * 108.20745 * 359.73533 * 26 25 24 28 28 H 1.09005 * 109.46742 * 60.00624 * 1 2 3 29 29 H 1.08993 * 109.47285 * 300.00783 * 1 2 3 30 30 H 1.09002 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47531 * 59.99990 * 3 2 1 32 32 H 1.09005 * 109.47247 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46869 * 299.99204 * 3 2 1 34 34 H 1.09005 * 109.47041 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47443 * 300.00103 * 4 2 1 36 36 H 1.09002 * 109.47239 * 300.00344 * 8 6 5 37 37 H 1.09004 * 109.47090 * 60.00659 * 8 6 5 38 38 H 1.07999 * 119.88113 * 359.97438 * 10 9 8 39 39 H 1.07998 * 119.74697 * 179.97438 * 11 10 9 40 40 H 1.08005 * 119.87034 * 179.97438 * 12 11 10 41 41 H 1.08004 * 120.12753 * 179.97438 * 13 12 11 42 42 H 0.96995 * 120.00539 * 179.97438 * 18 17 15 43 43 H 1.08005 * 126.12540 * 0.02562 * 24 23 2 44 44 H 1.07997 * 126.04328 * 180.16312 * 25 24 23 45 45 H 1.07999 * 125.89765 * 179.71672 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 1.5561 -0.0369 -2.4348 6 6 1.9173 -0.5468 -3.6227 7 8 2.6143 -1.5326 -3.6704 8 6 1.4525 0.1097 -4.8971 9 6 1.9915 -0.6523 -6.0803 10 6 3.1596 -0.2501 -6.6871 11 6 3.6579 -0.9495 -7.7752 12 6 2.9873 -2.0598 -8.2652 13 6 1.8173 -2.4792 -7.6749 14 6 1.3056 -1.7810 -6.5653 15 6 0.1081 -2.2072 -5.9460 16 1 -0.0733 -1.9782 -4.9062 17 6 -0.8422 -2.9255 -6.6804 18 7 -0.7898 -2.9329 -7.9876 19 14 -2.1855 -3.8740 -5.7943 20 1 -2.0254 -3.7054 -4.3275 21 1 -3.5137 -3.3557 -6.2095 22 1 -2.0858 -5.3144 -6.1412 23 7 2.0183 -0.6905 1.1963 24 6 2.0216 -0.1969 2.4522 25 6 2.5482 -1.1416 3.2654 26 6 2.8871 -2.2468 2.4779 27 7 2.5699 -1.9776 1.2375 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 0.5139 0.8898 30 1 -0.3633 -1.0277 0.0005 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4426 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 3.1301 -0.7209 -1.2493 35 1 1.6767 -1.7490 -1.2491 36 1 0.3630 0.1083 -4.9301 37 1 1.8157 1.1370 -4.9301 38 1 3.6900 0.6136 -6.3141 39 1 4.5749 -0.6266 -8.2455 40 1 3.3845 -2.5970 -9.1138 41 1 1.2963 -3.3441 -8.0584 42 1 -1.4482 -3.4310 -8.4966 43 1 1.6647 0.7766 2.7547 44 1 2.6867 -1.0556 4.3330 45 1 3.3337 -3.1639 2.8326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851307324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:09 Heat of formation + Delta-G solvation = -8.781247 kcal Electronic energy + Delta-G solvation = -27625.584279 eV Core-core repulsion = 23801.943202 eV Total energy + Delta-G solvation = -3823.641076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.29664 -41.50333 -39.52016 -38.22336 -36.51177 -35.55323 -33.61653 -31.49713 -31.38912 -30.70196 -29.25908 -28.44677 -27.77110 -26.85591 -23.81400 -22.90049 -22.69314 -21.71952 -21.11918 -20.42441 -19.13459 -18.75013 -17.85231 -17.72743 -17.31685 -16.99335 -16.29652 -16.17744 -15.60866 -15.50123 -15.46279 -15.08902 -14.73201 -14.45101 -14.41364 -13.91615 -13.65108 -13.63036 -13.52758 -13.41151 -13.14730 -13.04977 -12.96234 -12.80934 -12.76638 -12.55927 -12.45578 -12.22595 -12.15502 -11.79115 -11.51333 -11.44602 -11.37448 -11.26755 -11.06995 -10.42357 -9.54125 -9.27495 -9.25297 -8.64871 -6.35897 0.83986 0.99847 1.04606 1.29797 1.31312 1.33384 1.45755 1.48885 1.91448 1.97436 2.16312 2.73646 3.19967 3.49132 3.65578 3.71235 3.93987 4.01166 4.10541 4.20255 4.25160 4.34578 4.42403 4.49734 4.55438 4.60650 4.67445 4.73301 4.75494 4.75576 4.79556 4.90471 4.97888 5.08589 5.14826 5.16344 5.17108 5.31752 5.37050 5.49450 5.72413 5.75487 5.98595 6.10735 6.14416 6.17672 6.35960 6.67762 6.78063 6.85264 6.93137 7.04940 8.31667 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.003312 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.592377 B = 8451.405326 C = 9576.774342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.191 3.809 3 C -0.152 4.152 4 C 0.082 3.918 5 O -0.346 6.346 6 C 0.466 3.534 7 O -0.533 6.533 8 C -0.037 4.037 9 C -0.203 4.203 10 C -0.084 4.084 11 C -0.242 4.242 12 C -0.113 4.113 13 C -0.193 4.193 14 C 0.098 3.902 15 C -0.485 4.485 16 H 0.069 0.931 17 C 0.040 3.960 18 N -0.821 5.821 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.256 1.256 22 H -0.268 1.268 23 N -0.373 5.373 24 C 0.063 3.937 25 C -0.281 4.281 26 C 0.034 3.966 27 N -0.355 5.355 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.288 0.712 43 H 0.211 0.789 44 H 0.174 0.826 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 10.272 19.188 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.108 3.892 3 C -0.209 4.209 4 C 0.007 3.993 5 O -0.262 6.262 6 C 0.310 3.690 7 O -0.421 6.421 8 C -0.074 4.074 9 C -0.204 4.204 10 C -0.102 4.102 11 C -0.261 4.261 12 C -0.131 4.131 13 C -0.212 4.212 14 C 0.096 3.904 15 C -0.515 4.515 16 H 0.087 0.913 17 C -0.175 4.175 18 N -0.447 5.447 19 Si 0.789 3.211 20 H -0.191 1.191 21 H -0.181 1.181 22 H -0.193 1.193 23 N -0.158 5.158 24 C -0.082 4.082 25 C -0.310 4.310 26 C -0.151 4.151 27 N -0.177 5.177 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.061 0.939 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.129 0.871 37 H 0.149 0.851 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.227 0.773 44 H 0.191 0.809 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.600 9.531 17.650 20.068 hybrid contribution -0.259 -1.127 0.713 1.358 sum 0.340 8.405 18.363 20.197 Atomic orbital electron populations 1.22245 0.90944 1.02683 1.05311 1.20585 0.95905 0.92726 0.79940 1.22243 1.01728 0.91019 1.05958 1.22689 0.98591 0.95460 0.82532 1.86399 1.70150 1.55363 1.14306 1.24589 0.76633 0.82373 0.85385 1.90661 1.36879 1.26739 1.87783 1.20029 1.03338 0.99555 0.84485 1.19482 1.00312 0.99390 1.01249 1.20785 0.94609 0.99083 0.95767 1.20752 1.02752 1.00585 1.02027 1.20992 0.95487 0.97457 0.99169 1.21320 0.97065 1.01901 1.00932 1.17740 0.92014 0.89441 0.91228 1.19647 1.01864 1.32318 0.97653 0.91332 1.26604 1.00714 0.95021 0.95171 1.69862 1.33921 1.33261 1.07633 0.85372 0.77926 0.78519 0.79250 1.19057 1.18062 1.19318 1.48940 1.48091 1.11674 1.07085 1.23124 1.00201 1.01609 0.83254 1.21889 1.12591 0.94430 1.02139 1.24415 0.99321 1.01212 0.90146 1.77420 1.19754 0.97414 1.23067 0.88809 0.88716 0.93912 0.88133 0.92337 0.88415 0.92385 0.93088 0.87145 0.85087 0.86000 0.86391 0.87480 0.88401 0.90168 0.77259 0.80854 0.78377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.59 71.98 0.62 -2.40 16 2 C 0.19 4.27 1.07 3.60 0.00 4.28 16 3 C -0.15 -2.34 8.14 71.98 0.59 -1.75 16 4 C 0.08 2.62 3.93 71.98 0.28 2.90 16 5 O -0.35 -11.23 8.88 -51.40 -0.46 -11.69 16 6 C 0.47 18.74 7.57 71.24 0.54 19.28 16 7 O -0.53 -26.33 15.78 21.96 0.35 -25.99 16 8 C -0.04 -1.41 5.29 29.10 0.15 -1.26 16 9 C -0.20 -9.61 4.43 -19.40 -0.09 -9.69 16 10 C -0.08 -3.70 9.66 22.22 0.21 -3.49 16 11 C -0.24 -10.78 10.05 22.46 0.23 -10.56 16 12 C -0.11 -5.48 10.02 22.22 0.22 -5.26 16 13 C -0.19 -10.59 8.69 22.73 0.20 -10.39 16 14 C 0.10 5.34 5.56 -21.29 -0.12 5.23 16 15 C -0.49 -26.27 8.14 23.46 0.19 -26.08 16 16 H 0.07 3.64 6.67 -2.91 -0.02 3.62 16 17 C 0.04 2.05 5.16 85.26 0.44 2.49 16 18 N -0.82 -43.24 10.96 21.83 0.24 -43.00 16 19 Si 0.97 39.49 29.59 68.60 2.03 41.52 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 N -0.37 -8.74 3.43 -307.83 -1.06 -9.80 16 24 C 0.06 1.03 10.60 83.54 0.89 1.92 16 25 C -0.28 -4.70 10.80 21.99 0.24 -4.46 16 26 C 0.03 0.76 12.03 85.24 1.02 1.78 16 27 N -0.36 -10.39 11.66 -57.02 -0.66 -11.05 16 28 H 0.09 1.78 7.68 -2.38 -0.02 1.76 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.88 7.36 -2.39 -0.02 0.86 16 32 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.10 1.45 7.68 -2.39 -0.02 1.43 16 34 H 0.06 2.01 8.13 -2.38 -0.02 1.99 16 35 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 36 H 0.11 4.19 7.08 -2.39 -0.02 4.17 16 37 H 0.13 3.82 8.05 -2.38 -0.02 3.80 16 38 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 39 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.10 5.63 6.20 -2.91 -0.02 5.61 16 42 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 43 H 0.21 1.50 7.54 -2.91 -0.02 1.48 16 44 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 45 H 0.20 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -72.59 378.82 7.05 -65.55 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.99 Total: 31.91 kcal Atomic # 6 Polarization: -43.08 SS G_CDS: 5.62 Total: -37.46 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -1.48 Total: -63.85 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.11 Total: -37.67 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -72.59 7.05 -65.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851307324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.766 kcal (2) G-P(sol) polarization free energy of solvation -72.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds