Wall clock time and date at job start Tue Mar 31 2020 15:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00434 * 2 1 4 4 C 1.53000 * 109.47075 * 124.99630 * 3 2 1 5 5 O 1.42901 * 109.47194 * 180.02562 * 4 3 2 6 6 N 1.41595 * 113.99925 * 180.02562 * 5 4 3 7 7 C 1.34784 * 119.99312 * 180.02562 * 6 5 4 8 8 O 1.21666 * 120.00206 * 359.97438 * 7 6 5 9 9 C 1.46915 * 119.99525 * 179.97438 * 7 6 5 10 10 C 1.36374 * 126.76930 * 359.97438 * 9 7 6 11 11 N 1.35474 * 109.77040 * 179.97438 * 10 9 7 12 12 C 1.46493 * 124.78618 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47400 * 265.02448 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.37963 * 110.42294 * 0.26591 * 11 10 9 23 23 C 1.39128 * 133.18358 * 180.48334 * 22 11 10 24 24 C 1.37764 * 119.92592 * 179.56790 * 23 22 11 25 25 C 1.38754 * 120.63813 * 359.70715 * 24 23 22 26 26 C 1.37750 * 120.30079 * 0.02562 * 25 24 23 27 27 C 1.39276 * 119.67080 * 0.02562 * 26 25 24 28 28 H 1.07998 * 120.00460 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99540 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99540 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46931 * 5.00031 * 3 2 1 32 32 H 1.08994 * 109.46895 * 244.99738 * 3 2 1 33 33 H 1.09003 * 109.46914 * 60.00389 * 4 3 2 34 34 H 1.09006 * 109.47241 * 300.00287 * 4 3 2 35 35 H 0.96994 * 120.00248 * 0.02562 * 6 5 4 36 36 H 1.07999 * 125.11454 * 359.95838 * 10 9 7 37 37 H 1.09004 * 109.46794 * 145.02547 * 12 11 10 38 38 H 1.09000 * 109.47559 * 25.03023 * 12 11 10 39 39 H 1.09004 * 109.47066 * 60.00265 * 13 12 11 40 40 H 1.08994 * 109.47405 * 300.00096 * 13 12 11 41 41 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 42 42 H 1.07996 * 120.03221 * 359.27757 * 23 22 11 43 43 H 1.08007 * 119.67954 * 179.69314 * 24 23 22 44 44 H 1.08001 * 119.85044 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.16629 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 8 3.7493 2.5708 1.1821 6 7 4.6801 2.6983 2.2414 7 6 5.4196 3.8191 2.3573 8 8 5.2877 4.7210 1.5515 9 6 6.3850 3.9517 3.4568 10 6 6.6433 3.0335 4.4314 11 7 7.5959 3.5098 5.2688 12 6 8.1213 2.7910 6.4321 13 6 7.3610 3.2260 7.6865 14 6 7.9020 2.4870 8.8834 15 1 8.7078 1.7782 8.7615 16 6 7.3724 2.7203 10.1349 17 7 6.3915 3.5836 10.2833 18 14 8.0482 1.8099 11.6194 19 1 9.4915 2.1221 11.7768 20 1 7.3135 2.2357 12.8377 21 1 7.8764 0.3479 11.4241 22 6 7.9966 4.7699 4.8751 23 6 8.9306 5.6716 5.3754 24 6 9.1216 6.8826 4.7471 25 6 8.3946 7.2131 3.6125 26 6 7.4692 6.3315 3.0988 27 6 7.2650 5.1040 3.7244 28 1 -0.5401 -0.9352 -0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3587 2.1317 0.0896 32 1 2.6214 1.4025 -0.9313 33 1 3.7400 0.5064 1.0921 34 1 2.4772 1.2355 2.1131 35 1 4.7855 1.9791 2.8836 36 1 6.1610 2.0715 4.5223 37 1 9.1805 3.0187 6.5519 38 1 7.9948 1.7185 6.2842 39 1 6.3018 2.9982 7.5667 40 1 7.4876 4.2984 7.8345 41 1 6.0187 3.7474 11.1637 42 1 9.5018 5.4242 6.2579 43 1 9.8442 7.5817 5.1418 44 1 8.5543 8.1662 3.1304 45 1 6.9042 6.5911 2.2157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856035134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:05 Heat of formation + Delta-G solvation = 37.462163 kcal Electronic energy + Delta-G solvation = -26361.815890 eV Core-core repulsion = 22540.180078 eV Total energy + Delta-G solvation = -3821.635812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27318 -39.02792 -37.47222 -36.91609 -35.33457 -34.13450 -32.68620 -31.99732 -30.46390 -29.47350 -28.89579 -28.11235 -25.20546 -23.52308 -22.96501 -22.49445 -21.71537 -20.50088 -20.22345 -19.56187 -18.25909 -17.26602 -16.67771 -16.35660 -16.19866 -15.46848 -15.30695 -15.21116 -14.92807 -14.57571 -14.47856 -14.02097 -13.94488 -13.64620 -13.42729 -13.30841 -12.94797 -12.53011 -12.50414 -12.37287 -12.07707 -11.84355 -11.52229 -11.44542 -11.25552 -11.10623 -11.00180 -10.76097 -10.66732 -10.34032 -9.97741 -9.88734 -9.71517 -9.49871 -9.26818 -8.89080 -8.58941 -7.99683 -7.39644 -6.22691 -4.29598 1.23187 1.66124 1.83226 2.02833 2.27707 3.07873 3.19084 3.25450 3.26831 3.62200 4.22408 4.23800 4.27261 4.51731 4.70154 4.75136 4.78614 4.87194 4.94941 4.96400 5.03519 5.13364 5.29420 5.39559 5.41063 5.49364 5.52812 5.63198 5.66444 5.81750 5.92330 5.94703 5.97520 6.19461 6.30739 6.31241 6.33302 6.69136 6.78881 6.85065 6.90528 6.98881 7.27194 7.32043 7.39524 7.48763 7.52238 7.73892 8.06228 8.46117 8.75945 9.36584 10.87967 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008597 B = 0.002902 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.983690 B = 9644.661019 C =12480.053357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.155 4.155 3 C -0.087 4.087 4 C 0.035 3.965 5 O -0.144 6.144 6 N -0.603 5.603 7 C 0.611 3.389 8 O -0.530 6.530 9 C -0.247 4.247 10 C 0.124 3.876 11 N -0.448 5.448 12 C 0.100 3.900 13 C 0.012 3.988 14 C -0.533 4.533 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.897 3.103 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.093 3.907 23 C -0.112 4.112 24 C -0.109 4.109 25 C -0.143 4.143 26 C -0.073 4.073 27 C -0.058 4.058 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.404 0.596 36 H 0.171 0.829 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.023 0.977 40 H 0.026 0.974 41 H 0.265 0.735 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 -4.630 -16.391 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.174 4.174 3 C -0.125 4.125 4 C -0.042 4.042 5 O -0.148 6.148 6 N -0.305 5.305 7 C 0.402 3.598 8 O -0.406 6.406 9 C -0.259 4.259 10 C -0.012 4.012 11 N -0.124 5.124 12 C -0.019 4.019 13 C -0.026 4.026 14 C -0.572 4.572 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.525 5.525 18 Si 0.725 3.275 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.012 4.012 23 C -0.132 4.132 24 C -0.128 4.128 25 C -0.162 4.162 26 C -0.092 4.092 27 C -0.062 4.062 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.244 0.756 36 H 0.188 0.812 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.571 -3.900 -16.686 17.504 hybrid contribution 0.061 -1.312 1.428 1.940 sum -3.510 -5.211 -15.258 16.501 Atomic orbital electron populations 1.23944 0.95862 1.02249 0.99935 1.22742 0.96002 0.97715 1.00901 1.20576 0.97626 0.96505 0.97805 1.22934 0.94524 0.86977 0.99804 1.90547 1.50342 1.36966 1.36991 1.47400 1.37501 1.20689 1.24912 1.17143 0.78496 0.80071 0.84064 1.90755 1.67522 1.39264 1.43050 1.19350 1.07198 0.98127 1.01200 1.22052 0.91091 0.98416 0.89666 1.44383 1.31233 1.13384 1.23446 1.22502 0.99581 0.95716 0.84094 1.19458 0.95723 0.97950 0.89448 1.20935 1.19676 1.24756 0.91789 0.92292 1.25004 0.94795 0.95069 0.99160 1.69957 1.24886 1.33722 1.23900 0.86571 0.79175 0.80036 0.81746 1.20030 1.21105 1.20081 1.18250 0.99687 0.86959 0.96290 1.20150 0.98615 0.93423 1.00981 1.20773 1.00194 0.95769 0.96058 1.20896 0.98123 0.99672 0.97548 1.20578 0.97407 0.91685 0.99492 1.18597 0.97432 0.94431 0.95785 0.88121 0.88283 0.86969 0.90150 0.89658 0.91963 0.91863 0.75622 0.81165 0.90010 0.89796 0.95847 0.95573 0.92526 0.85719 0.85885 0.86174 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 14.32 29.02 0.42 -0.71 16 2 C -0.16 -1.01 9.52 -36.02 -0.34 -1.36 16 3 C -0.09 -0.67 6.03 -27.88 -0.17 -0.84 16 4 C 0.04 0.31 6.21 37.16 0.23 0.54 16 5 O -0.14 -1.93 11.11 -29.61 -0.33 -2.26 16 6 N -0.60 -7.94 6.38 30.32 0.19 -7.74 16 7 C 0.61 10.23 7.94 -12.74 -0.10 10.13 16 8 O -0.53 -10.77 16.57 -12.92 -0.21 -10.98 16 9 C -0.25 -4.05 6.27 -103.31 -0.65 -4.70 16 10 C 0.12 1.82 10.75 -16.62 -0.18 1.64 16 11 N -0.45 -7.56 2.74 -114.22 -0.31 -7.88 16 12 C 0.10 1.78 5.89 -4.05 -0.02 1.75 16 13 C 0.01 0.27 5.30 -27.88 -0.15 0.13 16 14 C -0.53 -13.59 9.11 -34.44 -0.31 -13.90 16 15 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 18 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C 0.09 1.65 6.79 -83.96 -0.57 1.08 16 23 C -0.11 -1.83 9.97 -39.42 -0.39 -2.22 16 24 C -0.11 -1.56 10.01 -39.56 -0.40 -1.95 16 25 C -0.14 -2.05 10.03 -39.57 -0.40 -2.45 16 26 C -0.07 -1.20 9.85 -39.37 -0.39 -1.59 16 27 C -0.06 -1.03 6.27 -104.95 -0.66 -1.69 16 28 H 0.10 0.51 8.06 -52.49 -0.42 0.08 16 29 H 0.10 0.59 7.84 -52.48 -0.41 0.18 16 30 H 0.11 0.61 8.06 -52.48 -0.42 0.19 16 31 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.40 3.83 7.42 -40.82 -0.30 3.53 16 36 H 0.17 1.75 7.38 -52.49 -0.39 1.36 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 43 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.13 2.10 7.45 -52.48 -0.39 1.71 16 LS Contribution 391.84 15.07 5.90 5.90 Total: -1.00 -33.25 391.84 -9.73 -42.98 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.51 Total: 3.87 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -4.18 Total: -14.58 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.62 Total: -40.11 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.54 Total: -13.24 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.25 -9.73 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856035134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.445 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds