Wall clock time and date at job start Tue Mar 31 2020 15:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34815 * 117.00293 * 89.99523 * 13 3 2 15 15 O 1.21549 * 119.99801 * 0.02562 * 14 13 3 16 16 C 1.47002 * 119.99840 * 179.97438 * 14 13 3 17 17 C 1.38493 * 126.89295 * 179.68510 * 16 14 13 18 18 C 1.39644 * 105.35505 * 179.89846 * 17 16 14 19 19 N 1.30884 * 107.87887 * 0.37341 * 18 17 16 20 20 N 1.28439 * 110.94263 * 359.76591 * 19 18 17 21 21 C 1.46501 * 125.19392 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.46807 * 269.99575 * 21 20 19 23 23 C 1.50698 * 109.47238 * 180.02562 * 22 21 20 24 24 C 1.38234 * 119.99766 * 269.72433 * 23 22 21 25 25 C 1.38239 * 119.99882 * 179.76489 * 24 23 22 26 26 C 1.38234 * 119.99710 * 0.50822 * 25 24 23 27 27 C 1.38232 * 120.00522 * 359.74382 * 26 25 24 28 28 C 1.38237 * 119.99898 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 35 35 H 1.08001 * 127.32016 * 0.02562 * 17 16 14 36 36 H 1.07998 * 126.05675 * 180.13362 * 18 17 16 37 37 H 1.09001 * 109.47416 * 29.99030 * 21 20 19 38 38 H 1.09002 * 109.47498 * 149.99627 * 21 20 19 39 39 H 1.09010 * 109.46925 * 299.99938 * 22 21 20 40 40 H 1.08993 * 109.47613 * 59.99651 * 22 21 20 41 41 H 1.07998 * 120.00129 * 359.97438 * 24 23 22 42 42 H 1.07998 * 119.99874 * 180.23505 * 25 24 23 43 43 H 1.07999 * 119.99881 * 179.72503 * 26 25 24 44 44 H 1.08000 * 120.00411 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00226 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4675 2.7282 -1.2559 15 8 -0.2282 2.7405 -0.2593 16 6 0.0136 3.4083 -2.4776 17 6 -1.1757 4.0958 -2.6535 18 6 -1.1440 4.5586 -3.9706 19 7 -0.0215 4.1570 -4.5107 20 7 0.6777 3.4839 -3.6695 21 6 1.9876 2.8886 -3.9454 22 6 1.7996 1.4667 -4.4780 23 6 3.1470 0.8541 -4.7613 24 6 3.7203 0.9929 -6.0115 25 6 4.9585 0.4351 -6.2698 26 6 5.6186 -0.2704 -5.2812 27 6 5.0430 -0.4137 -4.0326 28 6 3.8070 0.1482 -3.7727 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0605 2.9501 35 1 -1.9599 4.2444 -1.9259 36 1 -1.9116 5.1409 -4.4584 37 1 2.5102 3.4893 -4.6899 38 1 2.5736 2.8580 -3.0268 39 1 1.2770 0.8660 -3.7335 40 1 1.2137 1.4972 -5.3966 41 1 3.2024 1.5399 -6.7853 42 1 5.4081 0.5467 -7.2454 43 1 6.5839 -0.7100 -5.4844 44 1 5.5585 -0.9652 -3.2603 45 1 3.3570 0.0359 -2.7974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857022222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:17 Heat of formation + Delta-G solvation = 4.300503 kcal Electronic energy + Delta-G solvation = -28748.768679 eV Core-core repulsion = 24925.694869 eV Total energy + Delta-G solvation = -3823.073809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.38461 -39.43731 -39.15500 -35.96152 -34.89392 -33.59773 -31.81921 -31.49588 -30.74226 -30.65776 -28.22701 -27.39877 -24.47912 -23.88355 -22.78046 -22.43195 -21.38071 -20.92204 -20.26073 -19.45664 -17.79617 -16.85527 -16.64415 -16.06882 -15.90809 -15.35266 -15.23973 -14.98163 -14.78761 -14.59670 -13.94901 -13.73723 -13.26805 -13.12570 -13.04856 -12.94542 -12.82942 -12.70159 -12.22987 -12.00047 -11.61672 -11.47295 -11.36620 -11.17497 -11.03979 -10.96195 -10.80442 -10.77802 -10.63926 -10.35612 -9.95713 -9.81341 -9.50592 -9.13801 -8.96698 -8.90779 -8.76273 -8.55475 -8.54794 -6.27603 -4.35374 1.32857 1.49393 1.56086 2.58376 2.72180 3.17561 3.23338 3.25915 3.43694 3.47146 3.91403 4.24585 4.59295 4.84843 4.93022 5.04771 5.06605 5.11697 5.14258 5.16938 5.32736 5.38368 5.55215 5.62639 5.66790 5.76584 5.92154 5.94255 6.07099 6.15032 6.16109 6.21738 6.26042 6.36395 6.56473 6.58577 6.70428 6.74955 6.79384 6.82946 6.89280 7.06339 7.09948 7.16284 7.50543 7.62417 7.80415 8.03513 8.13082 8.47680 8.75471 9.30386 10.79020 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007762 B = 0.006326 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3606.353007 B = 4425.191325 C = 7144.439850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.223 3.777 4 H 0.048 0.952 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.906 3.094 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.270 1.270 13 O -0.353 6.353 14 C 0.526 3.474 15 O -0.496 6.496 16 C -0.013 4.013 17 C -0.165 4.165 18 C -0.011 4.011 19 N -0.278 5.278 20 N -0.259 5.259 21 C 0.120 3.880 22 C -0.087 4.087 23 C -0.084 4.084 24 C -0.117 4.117 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.115 4.115 28 C -0.094 4.094 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.110 0.890 33 H 0.041 0.959 34 H 0.267 0.733 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 1.422 -14.097 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.733 3.267 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 O -0.270 6.270 14 C 0.368 3.632 15 O -0.384 6.384 16 C -0.139 4.139 17 C -0.194 4.194 18 C -0.187 4.187 19 N -0.111 5.111 20 N -0.049 5.049 21 C 0.000 4.000 22 C -0.125 4.125 23 C -0.085 4.085 24 C -0.135 4.135 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.134 4.134 28 C -0.112 4.112 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.128 0.872 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.180 0.820 36 H 0.203 0.797 37 H 0.117 0.883 38 H 0.143 0.857 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.141 0.859 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.986 1.249 -14.559 14.645 hybrid contribution 0.411 -0.082 1.041 1.122 sum -0.575 1.167 -13.518 13.580 Atomic orbital electron populations 1.21876 0.98366 0.99164 1.00802 1.22026 0.92627 0.99172 1.03375 1.20756 0.95120 0.88699 0.78289 0.93398 1.20959 0.89281 1.39250 1.06394 0.91309 1.24840 0.99024 0.94697 0.95055 1.69879 1.35407 1.37551 1.09398 0.86356 0.84073 0.77791 0.78488 1.20423 1.20935 1.19456 1.86546 1.33215 1.62607 1.44597 1.19583 0.81346 0.76743 0.85533 1.90845 1.55539 1.58364 1.33623 1.21139 0.96361 1.08347 0.88070 1.22154 0.97320 1.01703 0.98176 1.23522 0.96590 1.04987 0.93578 1.73124 1.06148 1.10940 1.20932 1.46007 1.16105 1.36226 1.06581 1.22307 0.79004 0.93528 1.05125 1.20832 0.95024 0.94418 1.02272 1.19578 0.95724 0.99117 0.94077 1.21013 0.95815 1.00293 0.96378 1.21040 0.95416 0.99002 0.99117 1.21157 0.99792 0.99444 0.93751 1.21240 0.95676 0.99667 0.96767 1.21424 0.94791 0.95488 0.99536 0.92709 0.94712 0.95025 0.87206 0.94026 0.92295 0.81955 0.79713 0.88335 0.85701 0.89700 0.90533 0.86363 0.86471 0.86481 0.85856 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.56 37.16 0.32 -2.71 16 2 C -0.13 -3.07 5.49 -26.73 -0.15 -3.22 16 3 C 0.22 5.43 2.25 -27.88 -0.06 5.37 16 4 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 5 C -0.52 -13.27 8.90 -34.44 -0.31 -13.58 16 6 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.07 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.88 -23.67 11.29 55.43 0.63 -23.04 16 9 Si 0.91 19.95 29.54 -169.99 -5.02 14.93 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 O -0.35 -7.54 7.27 -40.81 -0.30 -7.83 16 14 C 0.53 10.78 6.38 34.28 0.22 11.00 16 15 O -0.50 -11.25 14.11 -19.30 -0.27 -11.52 16 16 C -0.01 -0.23 6.96 -82.07 -0.57 -0.80 16 17 C -0.17 -2.46 10.85 -38.96 -0.42 -2.88 16 18 C -0.01 -0.15 12.03 -17.43 -0.21 -0.36 16 19 N -0.28 -4.14 11.90 30.58 0.36 -3.77 16 20 N -0.26 -4.08 3.35 -57.15 -0.19 -4.27 16 21 C 0.12 1.71 5.76 -4.04 -0.02 1.69 16 22 C -0.09 -1.18 5.67 -27.88 -0.16 -1.33 16 23 C -0.08 -1.14 5.13 -104.62 -0.54 -1.68 16 24 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 25 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 26 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 27 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 28 C -0.09 -1.42 9.70 -39.58 -0.38 -1.81 16 29 H 0.05 1.21 7.79 -51.93 -0.40 0.80 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16 32 H 0.11 2.77 5.95 -51.93 -0.31 2.46 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.16 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.13 2.02 6.15 -51.93 -0.32 1.70 16 39 H 0.08 1.28 8.09 -51.92 -0.42 0.86 16 40 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.14 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -28.46 377.83 -9.39 -37.84 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.33 Total: 8.17 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -3.96 Total: -16.20 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.80 Total: -31.08 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.57 Total: -19.35 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.46 -9.39 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857022222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.141 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds