Wall clock time and date at job start Tue Mar 31 2020 15:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34815 * 117.00293 * 89.99523 * 13 3 2 15 15 O 1.21549 * 119.99801 * 0.02562 * 14 13 3 16 16 C 1.47002 * 119.99840 * 179.97438 * 14 13 3 17 17 C 1.38493 * 126.89295 * 179.68510 * 16 14 13 18 18 C 1.39644 * 105.35505 * 179.89846 * 17 16 14 19 19 N 1.30884 * 107.87887 * 0.37341 * 18 17 16 20 20 N 1.28439 * 110.94263 * 359.76591 * 19 18 17 21 21 C 1.46501 * 125.19392 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.46807 * 269.99575 * 21 20 19 23 23 C 1.50698 * 109.47238 * 180.02562 * 22 21 20 24 24 C 1.38234 * 119.99766 * 269.72433 * 23 22 21 25 25 C 1.38239 * 119.99882 * 179.76489 * 24 23 22 26 26 C 1.38234 * 119.99710 * 0.50822 * 25 24 23 27 27 C 1.38232 * 120.00522 * 359.74382 * 26 25 24 28 28 C 1.38237 * 119.99898 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 35 35 H 1.08001 * 127.32016 * 0.02562 * 17 16 14 36 36 H 1.07998 * 126.05675 * 180.13362 * 18 17 16 37 37 H 1.09001 * 109.47416 * 29.99030 * 21 20 19 38 38 H 1.09002 * 109.47498 * 149.99627 * 21 20 19 39 39 H 1.09010 * 109.46925 * 299.99938 * 22 21 20 40 40 H 1.08993 * 109.47613 * 59.99651 * 22 21 20 41 41 H 1.07998 * 120.00129 * 359.97438 * 24 23 22 42 42 H 1.07998 * 119.99874 * 180.23505 * 25 24 23 43 43 H 1.07999 * 119.99881 * 179.72503 * 26 25 24 44 44 H 1.08000 * 120.00411 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00226 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4675 2.7282 -1.2559 15 8 -0.2282 2.7405 -0.2593 16 6 0.0136 3.4083 -2.4776 17 6 -1.1757 4.0958 -2.6535 18 6 -1.1440 4.5586 -3.9706 19 7 -0.0215 4.1570 -4.5107 20 7 0.6777 3.4839 -3.6695 21 6 1.9876 2.8886 -3.9454 22 6 1.7996 1.4667 -4.4780 23 6 3.1470 0.8541 -4.7613 24 6 3.7203 0.9929 -6.0115 25 6 4.9585 0.4351 -6.2698 26 6 5.6186 -0.2704 -5.2812 27 6 5.0430 -0.4137 -4.0326 28 6 3.8070 0.1482 -3.7727 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0605 2.9501 35 1 -1.9599 4.2444 -1.9259 36 1 -1.9116 5.1409 -4.4584 37 1 2.5102 3.4893 -4.6899 38 1 2.5736 2.8580 -3.0268 39 1 1.2770 0.8660 -3.7335 40 1 1.2137 1.4972 -5.3966 41 1 3.2024 1.5399 -6.7853 42 1 5.4081 0.5467 -7.2454 43 1 6.5839 -0.7100 -5.4844 44 1 5.5585 -0.9652 -3.2603 45 1 3.3570 0.0359 -2.7974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857022222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:16 Heat of formation + Delta-G solvation = -7.979668 kcal Electronic energy + Delta-G solvation = -28749.301187 eV Core-core repulsion = 24925.694869 eV Total energy + Delta-G solvation = -3823.606317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.59222 -41.14662 -40.15491 -37.71934 -36.06694 -35.45245 -33.42637 -32.85815 -32.00891 -31.70969 -29.40205 -29.22744 -25.91410 -25.31584 -24.44515 -23.42958 -22.53506 -22.08848 -21.90424 -20.99453 -19.25579 -18.64784 -17.89363 -17.67109 -17.31211 -16.71720 -16.52013 -16.38427 -16.21272 -15.83395 -15.18543 -15.04473 -14.80010 -14.58788 -14.26317 -14.12761 -14.02849 -13.94878 -13.72493 -13.43184 -13.33096 -13.17683 -13.01295 -12.84614 -12.60593 -12.37485 -12.12986 -12.03601 -11.94345 -11.78896 -11.73059 -11.54767 -11.38632 -10.83766 -10.54820 -10.32556 -10.16090 -9.76597 -9.57474 -8.27251 -6.42455 -0.00124 0.44054 0.55717 1.37221 1.40809 1.41469 1.52156 1.58084 1.84578 1.96740 2.38926 2.90730 3.03596 3.43009 3.68305 3.85211 3.91263 3.97528 4.18163 4.21531 4.23842 4.32775 4.35850 4.36946 4.39841 4.44295 4.54915 4.62869 4.67804 4.80944 4.85644 4.89139 4.93007 5.05723 5.17268 5.18812 5.23237 5.30080 5.44656 5.50659 5.60568 5.64446 5.69159 5.71250 5.76607 5.90511 6.06893 6.16959 6.58433 6.81890 7.01949 7.27681 8.79572 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007762 B = 0.006326 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3606.353007 B = 4425.191325 C = 7144.439850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.125 4.125 3 C 0.231 3.769 4 H 0.006 0.994 5 C -0.536 4.536 6 H 0.067 0.933 7 C 0.024 3.976 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.277 1.277 11 H -0.278 1.278 12 H -0.260 1.260 13 O -0.348 6.348 14 C 0.524 3.476 15 O -0.526 6.526 16 C -0.049 4.049 17 C -0.155 4.155 18 C 0.004 3.996 19 N -0.278 5.278 20 N -0.261 5.261 21 C 0.122 3.878 22 C -0.075 4.075 23 C -0.091 4.091 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.134 4.134 28 C -0.120 4.120 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.269 0.731 35 H 0.177 0.823 36 H 0.232 0.768 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.145 0.855 42 H 0.151 0.849 43 H 0.142 0.858 44 H 0.120 0.880 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.202 2.219 -17.383 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.163 4.163 3 C 0.178 3.822 4 H 0.024 0.976 5 C -0.573 4.573 6 H 0.085 0.915 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.184 1.184 13 O -0.265 6.265 14 C 0.368 3.632 15 O -0.416 6.416 16 C -0.174 4.174 17 C -0.184 4.184 18 C -0.171 4.171 19 N -0.111 5.111 20 N -0.051 5.051 21 C 0.002 3.998 22 C -0.113 4.113 23 C -0.092 4.092 24 C -0.132 4.132 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.152 4.152 28 C -0.139 4.139 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.194 0.806 36 H 0.248 0.752 37 H 0.139 0.861 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.163 0.837 42 H 0.169 0.831 43 H 0.160 0.840 44 H 0.138 0.862 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.596 2.048 -17.860 17.987 hybrid contribution 0.218 -0.263 1.987 2.016 sum -0.378 1.785 -15.873 15.978 Atomic orbital electron populations 1.21728 0.96702 1.00511 0.99952 1.21845 0.94027 0.98063 1.02406 1.20415 0.94638 0.89049 0.78117 0.97599 1.21178 0.89949 1.39530 1.06658 0.91508 1.25643 1.03391 0.94086 0.94533 1.70002 1.37193 1.38058 1.09842 0.85386 0.78747 0.77805 0.78815 1.20255 1.20278 1.18436 1.86566 1.34199 1.62833 1.42855 1.20111 0.80455 0.76151 0.86502 1.90818 1.56085 1.59607 1.35046 1.20960 0.98142 1.10496 0.87771 1.22523 0.96340 1.00116 0.99401 1.24240 0.96539 1.03845 0.92485 1.73149 1.06702 1.10595 1.20694 1.46083 1.16429 1.36559 1.06071 1.22294 0.78613 0.94437 1.04431 1.20699 0.95172 0.93424 1.02038 1.19587 0.95690 0.99257 0.94672 1.21311 0.96127 0.99898 0.95854 1.21460 0.94899 0.97431 1.00209 1.21461 1.00699 0.99092 0.92839 1.21336 0.95505 1.00273 0.98052 1.21269 0.95972 0.97757 0.98868 0.94427 0.92146 0.94892 0.89441 0.93477 0.92142 0.80590 0.75208 0.86080 0.88374 0.92276 0.88863 0.83743 0.83112 0.83992 0.86242 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 8.56 71.98 0.62 -5.10 16 2 C -0.13 -6.08 5.49 30.59 0.17 -5.91 16 3 C 0.23 11.97 2.25 29.85 0.07 12.04 16 4 H 0.01 0.37 7.16 -2.38 -0.02 0.35 16 5 C -0.54 -28.68 8.90 25.60 0.23 -28.45 16 6 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 7 C 0.02 1.25 5.29 84.66 0.45 1.70 16 8 N -0.91 -50.76 11.29 21.45 0.24 -50.52 16 9 Si 0.97 41.69 29.54 68.60 2.03 43.71 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 13 O -0.35 -15.84 7.27 -57.27 -0.42 -16.26 16 14 C 0.52 22.49 6.38 70.12 0.45 22.94 16 15 O -0.53 -25.08 14.11 19.67 0.28 -24.80 16 16 C -0.05 -1.70 6.96 40.75 0.28 -1.42 16 17 C -0.16 -4.36 10.85 22.67 0.25 -4.11 16 18 C 0.00 0.08 12.03 85.17 1.02 1.11 16 19 N -0.28 -7.53 11.90 -57.15 -0.68 -8.21 16 20 N -0.26 -8.00 3.35 -334.73 -1.12 -9.12 16 21 C 0.12 3.46 5.76 86.38 0.50 3.95 16 22 C -0.08 -2.02 5.67 29.85 0.17 -1.85 16 23 C -0.09 -2.45 5.13 -19.86 -0.10 -2.55 16 24 C -0.11 -2.41 9.70 22.27 0.22 -2.20 16 25 C -0.12 -2.37 10.05 22.27 0.22 -2.15 16 26 C -0.12 -2.72 10.05 22.27 0.22 -2.49 16 27 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 28 C -0.12 -3.81 9.70 22.27 0.22 -3.59 16 29 H 0.04 1.73 7.79 -2.39 -0.02 1.71 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.03 1.39 6.06 -2.38 -0.01 1.37 16 32 H 0.09 4.67 5.95 -2.39 -0.01 4.65 16 33 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 35 H 0.18 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.23 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.10 3.34 6.15 -2.39 -0.01 3.32 16 39 H 0.06 1.88 8.09 -2.38 -0.02 1.86 16 40 H 0.09 2.16 8.08 -2.39 -0.02 2.14 16 41 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 43 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 45 H 0.11 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -64.86 377.83 6.51 -58.35 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.99 Total: 28.47 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 5.20 Total: -21.62 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -1.56 Total: -67.85 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.14 Total: -41.06 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -64.86 6.51 -58.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857022222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.368 kcal (2) G-P(sol) polarization free energy of solvation -64.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds