Wall clock time and date at job start Tue Mar 31 2020 15:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47296 * 2 1 4 4 H 1.09004 * 109.46660 * 305.00424 * 3 2 1 5 5 C 1.50691 * 109.47316 * 184.99866 * 3 2 1 6 6 H 1.08006 * 120.00241 * 245.65428 * 5 3 2 7 7 C 1.37880 * 120.00106 * 65.65341 * 5 3 2 8 8 N 1.31518 * 119.99979 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00203 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47187 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47114 * 120.00052 * 9 7 5 12 12 H 1.48502 * 109.47674 * 240.00506 * 9 7 5 13 13 O 1.45208 * 109.47003 * 64.99720 * 3 2 1 14 14 C 1.34817 * 116.99923 * 264.09276 * 13 3 2 15 15 O 1.21553 * 120.00326 * 4.72516 * 14 13 3 16 16 C 1.47008 * 119.99840 * 184.73285 * 14 13 3 17 17 C 1.38484 * 126.89461 * 174.76878 * 16 14 13 18 18 C 1.39639 * 105.35657 * 179.89382 * 17 16 14 19 19 N 1.30885 * 107.87735 * 0.37306 * 18 17 16 20 20 N 1.28444 * 110.94479 * 359.76243 * 19 18 17 21 21 C 1.46500 * 125.19554 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.47138 * 95.10483 * 21 20 19 23 23 C 1.50700 * 109.47239 * 185.03936 * 22 21 20 24 24 C 1.38237 * 119.99733 * 274.70057 * 23 22 21 25 25 C 1.38233 * 120.00274 * 179.76622 * 24 23 22 26 26 C 1.38241 * 119.99480 * 0.49874 * 25 24 23 27 27 C 1.38234 * 119.99967 * 359.75275 * 26 25 24 28 28 C 1.38228 * 120.00360 * 94.96480 * 23 22 21 29 29 H 1.09006 * 109.47243 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47053 * 60.00220 * 1 2 3 31 31 H 1.09000 * 109.47165 * 299.99917 * 1 2 3 32 32 H 1.09001 * 109.47053 * 119.99780 * 2 1 3 33 33 H 1.09000 * 109.47165 * 240.00083 * 2 1 3 34 34 H 0.96992 * 120.00216 * 179.97438 * 8 7 5 35 35 H 1.08002 * 127.31966 * 359.97438 * 17 16 14 36 36 H 1.07997 * 126.06300 * 180.13839 * 18 17 16 37 37 H 1.09000 * 109.46721 * 215.10349 * 21 20 19 38 38 H 1.09000 * 109.46910 * 335.10427 * 21 20 19 39 39 H 1.09009 * 109.47187 * 305.03344 * 22 21 20 40 40 H 1.08999 * 109.47367 * 65.03707 * 22 21 20 41 41 H 1.08006 * 120.00010 * 359.97438 * 24 23 22 42 42 H 1.07999 * 120.00353 * 180.22629 * 25 24 23 43 43 H 1.07998 * 119.99715 * 179.72381 * 26 25 24 44 44 H 1.08008 * 119.99675 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.00156 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1505 1.8056 0.6920 7 6 4.1390 0.9847 -1.2785 8 7 3.3978 0.5451 -2.2720 9 14 6.0006 0.9876 -1.4322 10 1 6.5994 1.5280 -0.1853 11 1 6.4814 -0.4004 -1.6506 12 1 6.4011 1.8369 -2.5826 13 8 1.6558 2.0917 1.2407 14 6 0.5282 2.8304 1.2213 15 8 -0.1619 2.8600 0.2212 16 6 0.1334 3.6003 2.4098 17 6 -0.9315 4.4793 2.5150 18 6 -0.8924 4.9523 3.8282 19 7 0.1267 4.3905 4.4274 20 7 0.7471 3.5966 3.6308 21 6 1.9319 2.8080 3.9780 22 6 1.5025 1.4020 4.4018 23 6 2.7070 0.6306 4.8764 24 6 3.5032 -0.0373 3.9649 25 6 4.6108 -0.7409 4.3997 26 6 4.9163 -0.7851 5.7472 27 6 4.1171 -0.1215 6.6592 28 6 3.0125 0.5864 6.2238 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8178 0.2222 -3.0844 35 1 -1.6421 4.7421 1.7453 36 1 -1.5787 5.6595 4.2700 37 1 2.5904 2.7412 3.1120 38 1 2.4608 3.2897 4.8004 39 1 0.7746 1.4725 5.2101 40 1 1.0534 0.8877 3.5522 41 1 3.2618 -0.0067 2.9126 42 1 5.2349 -1.2597 3.6872 43 1 5.7790 -1.3385 6.0874 44 1 4.3556 -0.1564 7.7121 45 1 2.3878 1.1043 6.9365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857022223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:23 Heat of formation + Delta-G solvation = 2.202117 kcal Electronic energy + Delta-G solvation = -28643.380383 eV Core-core repulsion = 24820.215581 eV Total energy + Delta-G solvation = -3823.164802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.38166 -39.40469 -39.19903 -35.97085 -34.91200 -33.55674 -31.84176 -31.55745 -30.78761 -30.67195 -28.24300 -27.38779 -24.50299 -23.87930 -22.78533 -22.47148 -21.37372 -20.98336 -20.26595 -19.46896 -17.80790 -16.86964 -16.66056 -16.08293 -15.87554 -15.36610 -15.29129 -14.95508 -14.80433 -14.58705 -13.94130 -13.74879 -13.31389 -13.17223 -13.07383 -12.99920 -12.85642 -12.69181 -12.31294 -12.02255 -11.56409 -11.47844 -11.38627 -11.18861 -11.04877 -11.00519 -10.82115 -10.74541 -10.66720 -10.35074 -9.98901 -9.84296 -9.54751 -9.13781 -8.96849 -8.91703 -8.81557 -8.59063 -8.56226 -6.28325 -4.35443 1.31219 1.47120 1.50937 2.57979 2.72528 3.16742 3.23354 3.26872 3.38801 3.53543 3.86487 4.24868 4.58882 4.81834 4.90110 5.04411 5.05562 5.10484 5.12399 5.14919 5.29754 5.35574 5.54429 5.59210 5.64523 5.74134 5.90175 5.93295 6.04566 6.12116 6.12657 6.18795 6.21902 6.33447 6.52204 6.58721 6.65140 6.73472 6.75329 6.80721 6.88531 7.03806 7.06999 7.11672 7.49906 7.58700 7.76856 8.00857 8.13136 8.46942 8.76521 9.30643 10.79667 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007599 B = 0.006080 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3684.025562 B = 4604.199960 C = 7206.203552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.221 3.779 4 H 0.054 0.946 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.905 3.095 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.354 6.354 14 C 0.527 3.473 15 O -0.496 6.496 16 C -0.013 4.013 17 C -0.165 4.165 18 C -0.011 4.011 19 N -0.278 5.278 20 N -0.260 5.260 21 C 0.121 3.879 22 C -0.089 4.089 23 C -0.082 4.082 24 C -0.099 4.099 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.127 4.127 28 C -0.116 4.116 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.267 0.733 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.139 0.861 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 0.839 14.597 14.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.732 3.268 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.270 6.270 14 C 0.368 3.632 15 O -0.384 6.384 16 C -0.139 4.139 17 C -0.193 4.193 18 C -0.187 4.187 19 N -0.112 5.112 20 N -0.049 5.049 21 C 0.002 3.998 22 C -0.128 4.128 23 C -0.083 4.083 24 C -0.117 4.117 25 C -0.135 4.135 26 C -0.142 4.142 27 C -0.145 4.145 28 C -0.134 4.134 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.180 0.820 36 H 0.203 0.797 37 H 0.141 0.859 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.157 0.843 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.689 0.583 15.090 15.195 hybrid contribution 0.454 -0.036 -1.076 1.169 sum -1.235 0.548 14.014 14.079 Atomic orbital electron populations 1.21840 0.98298 0.99302 1.00830 1.21927 0.92718 0.99078 1.02736 1.20776 0.95112 0.88692 0.78526 0.92855 1.21018 0.89358 1.43907 1.01846 0.91311 1.24869 0.99010 0.94753 0.95023 1.69933 1.35383 1.41327 1.05497 0.86320 0.84157 0.77913 0.78404 1.19423 1.20674 1.20742 1.86538 1.38252 1.58442 1.43793 1.19593 0.80845 0.77444 0.85283 1.90842 1.52976 1.61902 1.32647 1.21124 0.99502 1.05636 0.87607 1.22153 0.99229 0.99416 0.98551 1.23519 0.98373 1.03911 0.92863 1.73131 1.08851 1.06770 1.22408 1.45996 1.22176 1.30199 1.06571 1.22272 0.83322 0.89748 1.04501 1.20862 0.95979 0.93546 1.02369 1.19584 0.96561 0.98720 0.93453 1.21427 0.94070 0.95415 1.00751 1.21238 0.97344 0.99202 0.95684 1.21162 0.99615 0.99825 0.93561 1.21054 0.95646 0.98468 0.99323 1.21031 0.97647 0.99712 0.95032 0.94566 0.92740 0.94918 0.93817 0.88260 0.92347 0.81950 0.79708 0.85878 0.88213 0.90602 0.89452 0.84296 0.85833 0.86439 0.86429 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.68 37.16 0.32 -2.67 16 2 C -0.13 -2.86 5.53 -26.73 -0.15 -3.01 16 3 C 0.22 5.37 2.11 -27.89 -0.06 5.31 16 4 H 0.05 1.49 7.04 -51.93 -0.37 1.12 16 5 C -0.52 -13.39 8.83 -34.44 -0.30 -13.70 16 6 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.88 -23.86 11.74 55.43 0.65 -23.21 16 9 Si 0.91 20.05 29.54 -169.99 -5.02 15.02 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 O -0.35 -7.52 7.08 -40.81 -0.29 -7.81 16 14 C 0.53 10.81 6.61 34.28 0.23 11.04 16 15 O -0.50 -11.30 14.55 -19.31 -0.28 -11.58 16 16 C -0.01 -0.23 6.96 -82.07 -0.57 -0.80 16 17 C -0.17 -2.47 10.85 -38.97 -0.42 -2.89 16 18 C -0.01 -0.15 12.03 -17.43 -0.21 -0.36 16 19 N -0.28 -4.15 11.90 30.58 0.36 -3.79 16 20 N -0.26 -4.08 3.35 -57.16 -0.19 -4.27 16 21 C 0.12 1.72 5.67 -4.04 -0.02 1.70 16 22 C -0.09 -1.20 5.67 -27.89 -0.16 -1.35 16 23 C -0.08 -1.09 5.13 -104.63 -0.54 -1.62 16 24 C -0.10 -1.42 9.72 -39.58 -0.38 -1.81 16 25 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 26 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 27 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 28 C -0.12 -1.35 9.68 -39.59 -0.38 -1.73 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 1.19 7.94 -51.93 -0.41 0.78 16 31 H 0.03 0.65 6.44 -51.93 -0.33 0.32 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 2.48 6.44 -51.93 -0.33 2.14 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.16 2.17 8.06 -52.49 -0.42 1.74 16 36 H 0.19 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.12 1.96 6.35 -51.93 -0.33 1.63 16 38 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.08 0.95 8.05 -51.92 -0.42 0.53 16 40 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 41 H 0.14 2.25 8.06 -52.48 -0.42 1.82 16 42 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -28.77 379.54 -9.37 -38.13 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.38 Total: 7.58 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -3.94 Total: -15.79 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.82 Total: -31.28 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.57 Total: -19.39 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.77 -9.37 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857022223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.335 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds