Wall clock time and date at job start Tue Mar 31 2020 15:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47296 * 2 1 4 4 H 1.09004 * 109.46660 * 305.00424 * 3 2 1 5 5 C 1.50691 * 109.47316 * 184.99866 * 3 2 1 6 6 H 1.08006 * 120.00241 * 245.65428 * 5 3 2 7 7 C 1.37880 * 120.00106 * 65.65341 * 5 3 2 8 8 N 1.31518 * 119.99979 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00203 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47187 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47114 * 120.00052 * 9 7 5 12 12 H 1.48502 * 109.47674 * 240.00506 * 9 7 5 13 13 O 1.45208 * 109.47003 * 64.99720 * 3 2 1 14 14 C 1.34817 * 116.99923 * 264.09276 * 13 3 2 15 15 O 1.21553 * 120.00326 * 4.72516 * 14 13 3 16 16 C 1.47008 * 119.99840 * 184.73285 * 14 13 3 17 17 C 1.38484 * 126.89461 * 174.76878 * 16 14 13 18 18 C 1.39639 * 105.35657 * 179.89382 * 17 16 14 19 19 N 1.30885 * 107.87735 * 0.37306 * 18 17 16 20 20 N 1.28444 * 110.94479 * 359.76243 * 19 18 17 21 21 C 1.46500 * 125.19554 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.47138 * 95.10483 * 21 20 19 23 23 C 1.50700 * 109.47239 * 185.03936 * 22 21 20 24 24 C 1.38237 * 119.99733 * 274.70057 * 23 22 21 25 25 C 1.38233 * 120.00274 * 179.76622 * 24 23 22 26 26 C 1.38241 * 119.99480 * 0.49874 * 25 24 23 27 27 C 1.38234 * 119.99967 * 359.75275 * 26 25 24 28 28 C 1.38228 * 120.00360 * 94.96480 * 23 22 21 29 29 H 1.09006 * 109.47243 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47053 * 60.00220 * 1 2 3 31 31 H 1.09000 * 109.47165 * 299.99917 * 1 2 3 32 32 H 1.09001 * 109.47053 * 119.99780 * 2 1 3 33 33 H 1.09000 * 109.47165 * 240.00083 * 2 1 3 34 34 H 0.96992 * 120.00216 * 179.97438 * 8 7 5 35 35 H 1.08002 * 127.31966 * 359.97438 * 17 16 14 36 36 H 1.07997 * 126.06300 * 180.13839 * 18 17 16 37 37 H 1.09000 * 109.46721 * 215.10349 * 21 20 19 38 38 H 1.09000 * 109.46910 * 335.10427 * 21 20 19 39 39 H 1.09009 * 109.47187 * 305.03344 * 22 21 20 40 40 H 1.08999 * 109.47367 * 65.03707 * 22 21 20 41 41 H 1.08006 * 120.00010 * 359.97438 * 24 23 22 42 42 H 1.07999 * 120.00353 * 180.22629 * 25 24 23 43 43 H 1.07998 * 119.99715 * 179.72381 * 26 25 24 44 44 H 1.08008 * 119.99675 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.00156 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1505 1.8056 0.6920 7 6 4.1390 0.9847 -1.2785 8 7 3.3978 0.5451 -2.2720 9 14 6.0006 0.9876 -1.4322 10 1 6.5994 1.5280 -0.1853 11 1 6.4814 -0.4004 -1.6506 12 1 6.4011 1.8369 -2.5826 13 8 1.6558 2.0917 1.2407 14 6 0.5282 2.8304 1.2213 15 8 -0.1619 2.8600 0.2212 16 6 0.1334 3.6003 2.4098 17 6 -0.9315 4.4793 2.5150 18 6 -0.8924 4.9523 3.8282 19 7 0.1267 4.3905 4.4274 20 7 0.7471 3.5966 3.6308 21 6 1.9319 2.8080 3.9780 22 6 1.5025 1.4020 4.4018 23 6 2.7070 0.6306 4.8764 24 6 3.5032 -0.0373 3.9649 25 6 4.6108 -0.7409 4.3997 26 6 4.9163 -0.7851 5.7472 27 6 4.1171 -0.1215 6.6592 28 6 3.0125 0.5864 6.2238 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8178 0.2222 -3.0844 35 1 -1.6421 4.7421 1.7453 36 1 -1.5787 5.6595 4.2700 37 1 2.5904 2.7412 3.1120 38 1 2.4608 3.2897 4.8004 39 1 0.7746 1.4725 5.2101 40 1 1.0534 0.8877 3.5522 41 1 3.2618 -0.0067 2.9126 42 1 5.2349 -1.2597 3.6872 43 1 5.7790 -1.3385 6.0874 44 1 4.3556 -0.1564 7.7121 45 1 2.3878 1.1043 6.9365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857022223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:21 Heat of formation + Delta-G solvation = -10.332493 kcal Electronic energy + Delta-G solvation = -28643.923925 eV Core-core repulsion = 24820.215581 eV Total energy + Delta-G solvation = -3823.708344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.59288 -41.11364 -40.16302 -37.72907 -36.06876 -35.41668 -33.49164 -32.86123 -32.01348 -31.71769 -29.39254 -29.22390 -25.93258 -25.31130 -24.43855 -23.42809 -22.53765 -22.09690 -21.92664 -20.99912 -19.26879 -18.65248 -17.88450 -17.68795 -17.25142 -16.71642 -16.53393 -16.39918 -16.18996 -15.83424 -15.20667 -15.04196 -14.81685 -14.60819 -14.28830 -14.15002 -14.05943 -13.97114 -13.70243 -13.40214 -13.34311 -13.16962 -13.01335 -12.83770 -12.56927 -12.38120 -12.13514 -12.05100 -11.95242 -11.81481 -11.75408 -11.55810 -11.40973 -10.85928 -10.56430 -10.32331 -10.16349 -9.77513 -9.58177 -8.29022 -6.43514 0.00135 0.43400 0.54833 1.37148 1.39315 1.41040 1.52254 1.57311 1.82066 2.00145 2.38209 2.89965 3.03222 3.43024 3.68086 3.84741 3.90270 3.96586 4.17947 4.21394 4.23359 4.32599 4.34573 4.36148 4.39075 4.44102 4.54232 4.62313 4.67408 4.81395 4.85195 4.88511 4.92531 5.05107 5.16374 5.18158 5.22695 5.29034 5.44464 5.50457 5.60392 5.62271 5.68647 5.70328 5.75715 5.86072 6.04965 6.16259 6.58045 6.81980 7.01666 7.27096 8.79485 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007599 B = 0.006080 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3684.025562 B = 4604.199960 C = 7206.203552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 C 0.228 3.772 4 H 0.011 0.989 5 C -0.538 4.538 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.272 1.272 12 H -0.280 1.280 13 O -0.348 6.348 14 C 0.524 3.476 15 O -0.527 6.527 16 C -0.048 4.048 17 C -0.156 4.156 18 C 0.004 3.996 19 N -0.279 5.279 20 N -0.261 5.261 21 C 0.123 3.877 22 C -0.077 4.077 23 C -0.091 4.091 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.115 4.115 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.269 0.731 35 H 0.177 0.823 36 H 0.232 0.768 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.150 0.850 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 1.417 17.843 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.175 3.825 4 H 0.029 0.971 5 C -0.576 4.576 6 H 0.085 0.915 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.198 1.198 12 H -0.206 1.206 13 O -0.264 6.264 14 C 0.368 3.632 15 O -0.416 6.416 16 C -0.173 4.173 17 C -0.184 4.184 18 C -0.171 4.171 19 N -0.112 5.112 20 N -0.051 5.051 21 C 0.004 3.996 22 C -0.115 4.115 23 C -0.091 4.091 24 C -0.142 4.142 25 C -0.150 4.150 26 C -0.140 4.140 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.194 0.806 36 H 0.248 0.752 37 H 0.116 0.884 38 H 0.139 0.861 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.142 0.858 43 H 0.161 0.839 44 H 0.168 0.832 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.392 1.162 18.353 18.443 hybrid contribution 0.297 -0.147 -2.007 2.034 sum -1.095 1.014 16.346 16.414 Atomic orbital electron populations 1.21695 0.96601 1.00731 0.99942 1.21745 0.94149 0.97826 1.01858 1.20438 0.94556 0.89166 0.78301 0.97120 1.21256 0.90114 1.44119 1.02101 0.91478 1.25683 1.03441 0.94151 0.94527 1.70052 1.37237 1.41934 1.05983 0.85332 0.78731 0.78205 0.78414 1.18677 1.19757 1.20605 1.86554 1.39075 1.58750 1.42044 1.20117 0.79931 0.76958 0.86154 1.90815 1.53668 1.63029 1.34128 1.20945 1.01581 1.07322 0.87448 1.22523 0.98107 0.97953 0.99859 1.24236 0.97885 1.03318 0.91647 1.73157 1.09285 1.06489 1.22286 1.46081 1.22465 1.30592 1.06011 1.22264 0.82904 0.90436 1.04032 1.20716 0.96363 0.92765 1.01679 1.19572 0.96357 0.98951 0.94257 1.21283 0.95741 0.97556 0.99599 1.21363 0.97113 0.99485 0.97027 1.21476 1.00368 0.99562 0.92629 1.21462 0.94672 0.97002 1.00849 1.21301 0.98129 0.99529 0.94321 0.91864 0.94546 0.94774 0.92989 0.90584 0.92160 0.80606 0.75205 0.88415 0.86118 0.89206 0.92086 0.87483 0.85782 0.83869 0.83200 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.68 71.98 0.63 -5.03 16 2 C -0.12 -5.63 5.53 30.59 0.17 -5.46 16 3 C 0.23 11.81 2.11 29.85 0.06 11.87 16 4 H 0.01 0.65 7.04 -2.38 -0.02 0.64 16 5 C -0.54 -28.89 8.83 25.60 0.23 -28.66 16 6 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 7 C 0.02 1.18 5.30 84.65 0.45 1.63 16 8 N -0.91 -51.26 11.74 21.45 0.25 -51.01 16 9 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 13 O -0.35 -15.75 7.08 -57.29 -0.41 -16.16 16 14 C 0.52 22.57 6.61 70.12 0.46 23.03 16 15 O -0.53 -25.27 14.55 19.66 0.29 -24.98 16 16 C -0.05 -1.68 6.96 40.75 0.28 -1.40 16 17 C -0.16 -4.41 10.85 22.67 0.25 -4.17 16 18 C 0.00 0.09 12.03 85.17 1.02 1.11 16 19 N -0.28 -7.62 11.90 -57.15 -0.68 -8.30 16 20 N -0.26 -8.03 3.35 -334.74 -1.12 -9.16 16 21 C 0.12 3.50 5.67 86.38 0.49 3.99 16 22 C -0.08 -2.07 5.67 29.85 0.17 -1.90 16 23 C -0.09 -2.37 5.13 -19.87 -0.10 -2.47 16 24 C -0.12 -3.72 9.72 22.27 0.22 -3.51 16 25 C -0.13 -3.46 10.05 22.27 0.22 -3.23 16 26 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 27 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 28 C -0.11 -2.39 9.68 22.27 0.22 -2.17 16 29 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.04 1.66 7.94 -2.39 -0.02 1.64 16 31 H 0.03 1.41 6.44 -2.39 -0.02 1.40 16 32 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.08 4.00 6.44 -2.39 -0.02 3.99 16 34 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.18 4.41 8.06 -2.91 -0.02 4.39 16 36 H 0.23 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.10 3.29 6.35 -2.39 -0.02 3.28 16 38 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.09 2.12 8.05 -2.38 -0.02 2.10 16 40 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 41 H 0.11 3.83 8.06 -2.91 -0.02 3.80 16 42 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 44 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 45 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -65.33 379.54 6.55 -58.78 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.99 Total: 27.64 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 5.21 Total: -20.71 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -1.55 Total: -68.47 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.12 Total: -41.14 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -65.33 6.55 -58.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857022223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.447 kcal (2) G-P(sol) polarization free energy of solvation -65.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds