Wall clock time and date at job start Tue Mar 31 2020 16:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46936 * 2 1 4 4 N 1.46505 * 109.46865 * 179.97438 * 3 2 1 5 5 C 1.36341 * 125.63506 * 89.97536 * 4 3 2 6 6 C 1.34856 * 108.21484 * 180.02562 * 5 4 3 7 7 C 1.40891 * 107.41578 * 0.02562 * 6 5 4 8 8 C 1.50699 * 126.28551 * 179.97438 * 7 6 5 9 9 N 1.46508 * 109.47227 * 90.02505 * 8 7 6 10 10 C 1.34772 * 119.99970 * 179.97438 * 9 8 7 11 11 O 1.21590 * 120.00434 * 0.02562 * 10 9 8 12 12 C 1.47537 * 119.99984 * 179.97438 * 10 9 8 13 13 C 1.39663 * 120.19467 * 0.02562 * 12 10 9 14 14 C 1.37827 * 119.91900 * 180.02562 * 13 12 10 15 15 C 1.38576 * 120.32555 * 359.97438 * 14 13 12 16 16 C 1.38026 * 120.39970 * 0.02562 * 15 14 13 17 17 C 1.38841 * 120.06944 * 359.67798 * 16 15 14 18 18 O 1.35518 * 120.16139 * 180.29766 * 17 16 15 19 19 C 1.34814 * 116.99879 * 354.39865 * 18 17 16 20 20 H 1.08003 * 120.00110 * 5.06907 * 19 18 17 21 21 C 1.38698 * 120.00108 * 185.06063 * 19 18 17 22 22 N 1.31520 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47155 * 90.00260 * 23 21 19 25 25 H 1.48497 * 109.47231 * 210.00413 * 23 21 19 26 26 H 1.48508 * 109.46870 * 330.00335 * 23 21 19 27 27 C 1.34842 * 107.42195 * 359.97438 * 7 6 5 28 28 H 1.09002 * 109.46847 * 60.00642 * 1 2 3 29 29 H 1.09002 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47207 * 300.00191 * 1 2 3 31 31 H 1.08995 * 109.47207 * 239.99809 * 2 1 3 32 32 H 1.09000 * 109.47045 * 120.00110 * 2 1 3 33 33 H 1.08995 * 109.47328 * 59.99884 * 3 2 1 34 34 H 1.09000 * 109.47343 * 299.99928 * 3 2 1 35 35 H 1.07996 * 125.89167 * 0.02562 * 5 4 3 36 36 H 1.07998 * 126.28550 * 179.73411 * 6 5 4 37 37 H 1.09005 * 109.47044 * 210.01985 * 8 7 6 38 38 H 1.09004 * 109.47685 * 330.02277 * 8 7 6 39 39 H 0.96999 * 119.99693 * 359.97438 * 9 8 7 40 40 H 1.07997 * 120.04535 * 359.97438 * 13 12 10 41 41 H 1.08007 * 119.83979 * 179.97438 * 14 13 12 42 42 H 1.07997 * 119.80120 * 180.02562 * 15 14 13 43 43 H 1.07991 * 119.96600 * 179.97438 * 16 15 14 44 44 H 0.97007 * 119.99872 * 179.97438 * 22 21 19 45 45 H 1.08001 * 125.89269 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2998 1.4418 -1.1071 6 6 5.5864 1.4415 -0.7029 7 6 5.5857 1.4413 0.7060 8 6 6.8000 1.4404 1.5985 9 7 7.1941 2.8213 1.8884 10 6 8.2616 3.0668 2.6736 11 8 8.8979 2.1421 3.1411 12 6 8.6588 4.4574 2.9650 13 6 7.9312 5.5226 2.4298 14 6 8.3077 6.8196 2.7053 15 6 9.4054 7.0731 3.5121 16 6 10.1340 6.0305 4.0481 17 6 9.7657 4.7176 3.7863 18 8 10.4761 3.6926 4.3165 19 6 11.5974 4.0109 4.9940 20 1 11.8493 5.0472 5.1647 21 6 12.4273 3.0076 5.4720 22 7 12.1206 1.7458 5.2638 23 14 13.9805 3.4487 6.4113 24 1 13.6725 3.5423 7.8610 25 1 15.0075 2.3991 6.1903 26 1 14.4962 4.7553 5.9294 27 6 4.2989 1.4421 1.1091 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9581 1.4416 -2.1316 36 1 6.4571 1.4369 -1.3418 37 1 6.5654 0.9263 2.5306 38 1 7.6197 0.9264 1.0964 39 1 6.6867 3.5590 1.5151 40 1 7.0752 5.3304 1.8000 41 1 7.7443 7.6424 2.2903 42 1 9.6926 8.0926 3.7228 43 1 10.9885 6.2361 4.6756 44 1 12.7012 1.0441 5.5978 45 1 3.9562 1.4427 2.1333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897538805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:55 Heat of formation + Delta-G solvation = 12.264942 kcal Electronic energy + Delta-G solvation = -26536.026642 eV Core-core repulsion = 22713.298197 eV Total energy + Delta-G solvation = -3822.728445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32996 -39.43144 -37.90288 -36.25260 -35.71430 -34.00382 -32.27268 -31.52359 -30.43827 -29.09260 -28.83101 -27.01785 -25.37556 -24.82007 -22.71504 -22.19522 -21.28686 -20.29939 -19.77009 -19.60003 -17.98446 -17.69659 -16.96388 -16.00769 -15.57220 -15.28676 -14.91304 -14.58169 -14.52066 -14.10583 -14.07893 -13.94420 -13.72322 -13.62549 -13.46357 -13.01460 -12.74842 -12.56948 -12.51385 -12.35104 -12.25327 -11.79306 -11.69334 -11.64945 -11.45250 -11.29096 -11.19514 -11.04487 -10.83855 -10.70723 -10.40973 -9.49786 -8.91252 -8.81663 -8.50311 -8.35107 -8.17027 -8.14553 -7.22970 -6.37610 -3.97543 1.81177 2.14277 2.39402 2.76167 2.84875 3.15845 3.17169 3.21771 3.88066 3.99071 4.17380 4.25175 4.38581 4.64723 4.73599 4.79803 4.88015 5.03437 5.11059 5.14384 5.18580 5.25335 5.30210 5.44869 5.48899 5.55480 5.57346 5.64528 5.71509 5.80712 5.90784 6.06969 6.12800 6.20165 6.28577 6.48558 6.64494 6.77967 6.93346 6.99542 7.13703 7.14364 7.17976 7.28497 7.31695 7.36589 7.77274 7.99625 8.33418 9.01984 9.26292 9.75652 10.76311 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.002395 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.146083 B =11686.187717 C =12746.977727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.141 4.141 3 C 0.106 3.894 4 N -0.449 5.449 5 C -0.021 4.021 6 C -0.181 4.181 7 C -0.179 4.179 8 C 0.198 3.802 9 N -0.738 5.738 10 C 0.552 3.448 11 O -0.504 6.504 12 C -0.224 4.224 13 C -0.038 4.038 14 C -0.232 4.232 15 C -0.052 4.052 16 C -0.239 4.239 17 C 0.189 3.811 18 O -0.124 6.124 19 C -0.404 4.404 20 H 0.093 0.907 21 C 0.044 3.956 22 N -0.833 5.833 23 Si 0.940 3.060 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.267 1.267 27 C 0.005 3.995 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.158 0.842 36 H 0.136 0.864 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.392 0.608 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.131 0.869 44 H 0.271 0.729 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.313 1.397 -11.259 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C -0.016 4.016 4 N -0.125 5.125 5 C -0.150 4.150 6 C -0.206 4.206 7 C -0.186 4.186 8 C 0.074 3.926 9 N -0.393 5.393 10 C 0.341 3.659 11 O -0.379 6.379 12 C -0.229 4.229 13 C -0.057 4.057 14 C -0.251 4.251 15 C -0.071 4.071 16 C -0.258 4.258 17 C 0.129 3.871 18 O -0.022 6.022 19 C -0.479 4.479 20 H 0.111 0.889 21 C -0.164 4.164 22 N -0.464 5.464 23 Si 0.765 3.235 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.126 4.126 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.176 0.824 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.226 0.774 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.149 0.851 44 H 0.081 0.919 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.111 0.153 -10.839 22.846 hybrid contribution 0.440 0.720 0.199 0.867 sum -19.671 0.874 -10.640 22.381 Atomic orbital electron populations 1.21710 0.94543 1.02461 1.02133 1.21933 0.96540 0.96009 1.03487 1.21909 0.77376 0.98143 1.04201 1.44102 1.05678 1.56618 1.06116 1.21752 0.90401 1.11466 0.91379 1.20876 0.95965 1.09265 0.94520 1.19553 0.93396 1.11414 0.94194 1.19357 0.92668 0.83864 0.96692 1.46003 1.32159 1.07717 1.53442 1.18238 0.79910 0.89179 0.78574 1.90942 1.51835 1.45178 1.49915 1.18909 1.01999 0.92647 1.09329 1.20773 0.96639 0.92149 0.96140 1.20454 1.01661 0.95772 1.07200 1.20880 0.93847 0.97757 0.94589 1.21150 1.04612 0.92016 1.08059 1.19292 0.90345 0.87937 0.89483 1.84183 1.32553 1.28574 1.56904 1.21485 0.98528 0.94402 1.33525 0.88939 1.25379 0.98968 0.94561 0.97469 1.70138 1.36695 0.98988 1.40621 0.85738 0.79845 0.78584 0.79381 1.19806 1.20176 1.19099 1.21710 0.90039 1.09384 0.91463 0.92425 0.92019 0.92312 0.91219 0.91073 0.89346 0.89430 0.82445 0.84631 0.91751 0.91411 0.77395 0.87050 0.87389 0.87280 0.85137 0.91924 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.14 -0.79 6.26 -26.73 -0.17 -0.96 16 3 C 0.11 0.63 6.09 -4.04 -0.02 0.61 16 4 N -0.45 -4.18 2.75 -117.13 -0.32 -4.50 16 5 C -0.02 -0.21 11.43 -16.75 -0.19 -0.40 16 6 C -0.18 -2.18 10.81 -39.78 -0.43 -2.61 16 7 C -0.18 -2.35 5.50 -104.82 -0.58 -2.92 16 8 C 0.20 3.21 6.17 -5.19 -0.03 3.17 16 9 N -0.74 -12.97 5.50 -62.52 -0.34 -13.32 16 10 C 0.55 12.73 7.76 -12.47 -0.10 12.63 16 11 O -0.50 -14.34 15.17 -16.57 -0.25 -14.59 16 12 C -0.22 -5.07 5.89 -104.81 -0.62 -5.69 16 13 C -0.04 -0.69 9.53 -39.20 -0.37 -1.06 16 14 C -0.23 -3.96 10.02 -39.61 -0.40 -4.36 16 15 C -0.05 -0.95 10.03 -39.53 -0.40 -1.35 16 16 C -0.24 -5.29 9.16 -39.44 -0.36 -5.65 16 17 C 0.19 4.84 6.66 -38.60 -0.26 4.58 16 18 O -0.12 -3.75 7.84 -21.05 -0.16 -3.91 16 19 C -0.40 -11.67 9.49 30.90 0.29 -11.37 16 20 H 0.09 2.43 5.21 -52.48 -0.27 2.15 16 21 C 0.04 1.25 5.49 -17.52 -0.10 1.15 16 22 N -0.83 -25.62 13.67 55.48 0.76 -24.87 16 23 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 C 0.00 0.06 11.35 -16.75 -0.19 -0.14 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.39 5.85 6.49 -40.82 -0.27 5.58 16 40 H 0.11 1.61 6.40 -52.49 -0.34 1.27 16 41 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -36.17 382.97 -9.35 -45.52 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.22 Total: 8.61 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -3.55 Total: -14.62 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.09 Total: -42.69 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.42 Total: -18.50 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.17 -9.35 -45.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897538805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.784 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds