Wall clock time and date at job start Tue Mar 31 2020 16:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46936 * 2 1 4 4 N 1.46505 * 109.46865 * 179.97438 * 3 2 1 5 5 C 1.36341 * 125.63506 * 89.97536 * 4 3 2 6 6 C 1.34856 * 108.21484 * 180.02562 * 5 4 3 7 7 C 1.40891 * 107.41578 * 0.02562 * 6 5 4 8 8 C 1.50699 * 126.28551 * 179.97438 * 7 6 5 9 9 N 1.46508 * 109.47227 * 90.02505 * 8 7 6 10 10 C 1.34772 * 119.99970 * 179.97438 * 9 8 7 11 11 O 1.21590 * 120.00434 * 0.02562 * 10 9 8 12 12 C 1.47537 * 119.99984 * 179.97438 * 10 9 8 13 13 C 1.39663 * 120.19467 * 0.02562 * 12 10 9 14 14 C 1.37827 * 119.91900 * 180.02562 * 13 12 10 15 15 C 1.38576 * 120.32555 * 359.97438 * 14 13 12 16 16 C 1.38026 * 120.39970 * 0.02562 * 15 14 13 17 17 C 1.38841 * 120.06944 * 359.67798 * 16 15 14 18 18 O 1.35518 * 120.16139 * 180.29766 * 17 16 15 19 19 C 1.34814 * 116.99879 * 354.39865 * 18 17 16 20 20 H 1.08003 * 120.00110 * 5.06907 * 19 18 17 21 21 C 1.38698 * 120.00108 * 185.06063 * 19 18 17 22 22 N 1.31520 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47155 * 90.00260 * 23 21 19 25 25 H 1.48497 * 109.47231 * 210.00413 * 23 21 19 26 26 H 1.48508 * 109.46870 * 330.00335 * 23 21 19 27 27 C 1.34842 * 107.42195 * 359.97438 * 7 6 5 28 28 H 1.09002 * 109.46847 * 60.00642 * 1 2 3 29 29 H 1.09002 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47207 * 300.00191 * 1 2 3 31 31 H 1.08995 * 109.47207 * 239.99809 * 2 1 3 32 32 H 1.09000 * 109.47045 * 120.00110 * 2 1 3 33 33 H 1.08995 * 109.47328 * 59.99884 * 3 2 1 34 34 H 1.09000 * 109.47343 * 299.99928 * 3 2 1 35 35 H 1.07996 * 125.89167 * 0.02562 * 5 4 3 36 36 H 1.07998 * 126.28550 * 179.73411 * 6 5 4 37 37 H 1.09005 * 109.47044 * 210.01985 * 8 7 6 38 38 H 1.09004 * 109.47685 * 330.02277 * 8 7 6 39 39 H 0.96999 * 119.99693 * 359.97438 * 9 8 7 40 40 H 1.07997 * 120.04535 * 359.97438 * 13 12 10 41 41 H 1.08007 * 119.83979 * 179.97438 * 14 13 12 42 42 H 1.07997 * 119.80120 * 180.02562 * 15 14 13 43 43 H 1.07991 * 119.96600 * 179.97438 * 16 15 14 44 44 H 0.97007 * 119.99872 * 179.97438 * 22 21 19 45 45 H 1.08001 * 125.89269 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2998 1.4418 -1.1071 6 6 5.5864 1.4415 -0.7029 7 6 5.5857 1.4413 0.7060 8 6 6.8000 1.4404 1.5985 9 7 7.1941 2.8213 1.8884 10 6 8.2616 3.0668 2.6736 11 8 8.8979 2.1421 3.1411 12 6 8.6588 4.4574 2.9650 13 6 7.9312 5.5226 2.4298 14 6 8.3077 6.8196 2.7053 15 6 9.4054 7.0731 3.5121 16 6 10.1340 6.0305 4.0481 17 6 9.7657 4.7176 3.7863 18 8 10.4761 3.6926 4.3165 19 6 11.5974 4.0109 4.9940 20 1 11.8493 5.0472 5.1647 21 6 12.4273 3.0076 5.4720 22 7 12.1206 1.7458 5.2638 23 14 13.9805 3.4487 6.4113 24 1 13.6725 3.5423 7.8610 25 1 15.0075 2.3991 6.1903 26 1 14.4962 4.7553 5.9294 27 6 4.2989 1.4421 1.1091 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9581 1.4416 -2.1316 36 1 6.4571 1.4369 -1.3418 37 1 6.5654 0.9263 2.5306 38 1 7.6197 0.9264 1.0964 39 1 6.6867 3.5590 1.5151 40 1 7.0752 5.3304 1.8000 41 1 7.7443 7.6424 2.2903 42 1 9.6926 8.0926 3.7228 43 1 10.9885 6.2361 4.6756 44 1 12.7012 1.0441 5.5978 45 1 3.9562 1.4427 2.1333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897538805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:53 Heat of formation + Delta-G solvation = -10.452294 kcal Electronic energy + Delta-G solvation = -26537.011735 eV Core-core repulsion = 22713.298197 eV Total energy + Delta-G solvation = -3823.713539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18152 -41.19733 -39.71640 -38.00541 -36.50625 -35.35886 -34.30645 -32.69419 -31.68989 -30.55419 -30.09778 -27.94953 -27.29989 -25.86585 -24.28755 -23.01669 -22.68311 -21.44472 -21.08278 -20.65430 -19.82614 -19.23767 -18.10720 -17.62579 -16.89991 -16.30912 -16.20324 -16.00705 -15.94183 -15.68024 -15.53282 -15.35174 -15.25668 -14.63221 -14.48979 -14.31114 -14.13380 -14.03111 -13.57967 -13.53128 -13.23924 -12.99156 -12.76563 -12.75231 -12.67184 -12.57950 -12.48703 -12.30584 -12.15956 -12.11030 -11.70722 -11.41478 -10.81971 -10.66210 -10.05256 -9.74745 -9.45248 -9.06046 -9.01772 -8.42690 -6.13856 0.14862 0.74211 1.27645 1.32889 1.44950 1.52538 1.81804 2.06995 2.13717 2.17370 2.69467 2.89640 3.24688 3.49117 3.79440 3.94363 3.99585 4.09757 4.11529 4.18237 4.21122 4.31047 4.36535 4.44810 4.51067 4.54378 4.60918 4.65044 4.79743 4.83082 4.89217 5.00760 5.09041 5.11891 5.13670 5.15861 5.25051 5.36783 5.50472 5.52569 5.60156 5.63166 5.70769 5.98088 5.99737 6.18719 6.27444 6.53246 6.77984 6.96250 7.53571 7.82993 8.78059 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.002395 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.146083 B =11686.187717 C =12746.977727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.101 3.899 4 N -0.442 5.442 5 C -0.005 4.005 6 C -0.209 4.209 7 C -0.202 4.202 8 C 0.202 3.798 9 N -0.710 5.710 10 C 0.545 3.455 11 O -0.572 6.572 12 C -0.244 4.244 13 C -0.030 4.030 14 C -0.200 4.200 15 C -0.040 4.040 16 C -0.257 4.257 17 C 0.148 3.852 18 O -0.189 6.189 19 C -0.427 4.427 20 H 0.108 0.892 21 C -0.025 4.025 22 N -0.906 5.906 23 Si 1.024 2.976 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.247 1.247 27 C 0.009 3.991 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.191 0.809 36 H 0.132 0.868 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.408 0.592 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.155 0.845 43 H 0.124 0.876 44 H 0.270 0.730 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.510 5.385 -13.179 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.019 4.019 4 N -0.116 5.116 5 C -0.135 4.135 6 C -0.233 4.233 7 C -0.209 4.209 8 C 0.079 3.921 9 N -0.365 5.365 10 C 0.335 3.665 11 O -0.452 6.452 12 C -0.248 4.248 13 C -0.048 4.048 14 C -0.219 4.219 15 C -0.058 4.058 16 C -0.276 4.276 17 C 0.093 3.907 18 O -0.091 6.091 19 C -0.503 4.503 20 H 0.125 0.875 21 C -0.224 4.224 22 N -0.542 5.542 23 Si 0.842 3.158 24 H -0.186 1.186 25 H -0.198 1.198 26 H -0.171 1.171 27 C -0.124 4.124 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.208 0.792 36 H 0.150 0.850 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.246 0.754 40 H 0.173 0.827 41 H 0.182 0.818 42 H 0.173 0.827 43 H 0.142 0.858 44 H 0.079 0.921 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -23.417 4.226 -12.824 27.031 hybrid contribution 1.024 -0.265 0.533 1.184 sum -22.393 3.961 -12.291 25.850 Atomic orbital electron populations 1.21684 0.93227 1.02667 1.02912 1.21879 0.97593 0.95594 1.02503 1.22211 0.75035 0.98658 1.05999 1.44345 1.07042 1.54971 1.05284 1.22166 0.89529 1.08999 0.92759 1.20964 0.97247 1.11168 0.93918 1.19257 0.92774 1.14467 0.94393 1.19257 0.93644 0.82618 0.96608 1.45812 1.30265 1.09090 1.51287 1.18601 0.80365 0.89077 0.78476 1.90919 1.54354 1.47090 1.52816 1.19315 1.02114 0.93777 1.09628 1.21268 0.96856 0.91399 0.95326 1.21166 1.00089 0.96631 1.03987 1.21431 0.92918 0.98688 0.92754 1.21305 1.05530 0.91749 1.09056 1.20091 0.91172 0.88951 0.90475 1.84188 1.34160 1.30798 1.59979 1.22053 0.99066 0.95345 1.33869 0.87527 1.26803 1.02904 0.94150 0.98513 1.70340 1.39053 1.00600 1.44227 0.84542 0.74487 0.78928 0.77849 1.18586 1.19784 1.17053 1.21817 0.89617 1.08333 0.92606 0.91308 0.92176 0.91852 0.91756 0.92579 0.88121 0.87120 0.79248 0.85043 0.93148 0.93679 0.75405 0.82733 0.81849 0.82716 0.85797 0.92054 0.81043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 71.98 0.71 -0.12 16 2 C -0.14 -1.22 6.26 30.59 0.19 -1.02 16 3 C 0.10 0.86 6.09 86.38 0.53 1.38 16 4 N -0.44 -7.00 2.75 -524.48 -1.44 -8.44 16 5 C 0.00 -0.08 11.43 83.21 0.95 0.87 16 6 C -0.21 -4.84 10.81 22.14 0.24 -4.60 16 7 C -0.20 -5.29 5.50 -20.00 -0.11 -5.40 16 8 C 0.20 6.97 6.17 85.63 0.53 7.50 16 9 N -0.71 -25.54 5.50 -469.98 -2.58 -28.12 16 10 C 0.54 26.53 7.76 86.70 0.67 27.21 16 11 O -0.57 -35.64 15.17 16.90 0.26 -35.38 16 12 C -0.24 -11.18 5.89 -19.99 -0.12 -11.30 16 13 C -0.03 -0.97 9.53 22.52 0.21 -0.76 16 14 C -0.20 -5.64 10.02 22.25 0.22 -5.42 16 15 C -0.04 -1.28 10.03 22.30 0.22 -1.06 16 16 C -0.26 -11.33 9.16 22.36 0.20 -11.12 16 17 C 0.15 7.93 6.66 22.91 0.15 8.09 16 18 O -0.19 -12.38 7.84 0.86 0.01 -12.37 16 19 C -0.43 -26.50 9.49 67.93 0.64 -25.86 16 20 H 0.11 5.91 5.21 -2.91 -0.02 5.90 16 21 C -0.02 -1.51 5.49 84.85 0.47 -1.04 16 22 N -0.91 -60.75 13.67 21.62 0.30 -60.45 16 23 Si 1.02 45.24 29.55 68.60 2.03 47.27 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 27 C 0.01 0.18 11.35 83.21 0.94 1.13 16 28 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.41 11.57 6.49 -92.71 -0.60 10.97 16 40 H 0.16 3.63 6.40 -2.91 -0.02 3.61 16 41 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.12 5.50 5.64 -2.92 -0.02 5.48 16 44 H 0.27 16.57 8.31 -92.70 -0.77 15.80 16 45 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -91.76 382.97 5.64 -86.12 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.41 Total: 32.90 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 6.67 Total: -21.51 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -3.73 Total: -97.02 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: 0.26 Total: -47.76 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -91.76 5.64 -86.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897538805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.668 kcal (2) G-P(sol) polarization free energy of solvation -91.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds