Wall clock time and date at job start Tue Mar 31 2020 14:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47093 * 2 1 4 4 C 1.52994 * 109.47356 * 239.99431 * 2 1 3 5 5 O 1.45202 * 109.46958 * 119.99636 * 2 1 3 6 6 C 1.34753 * 117.00155 * 60.00078 * 5 2 1 7 7 O 1.21531 * 119.99608 * 0.02562 * 6 5 2 8 8 C 1.47287 * 120.00265 * 179.97438 * 6 5 2 9 9 C 1.41334 * 126.42600 * 359.97438 * 8 6 5 10 10 N 1.30439 * 108.01313 * 179.77239 * 9 8 6 11 11 N 1.39924 * 108.91588 * 0.38582 * 10 9 8 12 12 C 1.46502 * 125.74330 * 179.87516 * 11 10 9 13 13 C 1.50707 * 109.46794 * 304.68520 * 12 11 10 14 14 C 1.38632 * 119.74798 * 90.00171 * 13 12 11 15 15 C 1.37610 * 120.24865 * 180.02562 * 14 13 12 16 16 C 1.40716 * 119.74899 * 0.27687 * 15 14 13 17 17 C 1.41392 * 120.24802 * 179.69783 * 16 15 14 18 18 H 1.08007 * 119.99541 * 150.23496 * 17 16 15 19 19 C 1.39945 * 120.00071 * 330.23912 * 17 16 15 20 20 N 1.30822 * 119.99676 * 161.71500 * 19 17 16 21 21 Si 1.86797 * 120.00031 * 341.71640 * 19 17 16 22 22 H 1.48495 * 109.47222 * 95.41135 * 21 19 17 23 23 H 1.48503 * 109.46947 * 215.41188 * 21 19 17 24 24 H 1.48504 * 109.47122 * 335.41193 * 21 19 17 25 25 C 1.40722 * 119.50521 * 359.47220 * 16 15 14 26 26 C 1.37614 * 119.74522 * 0.50698 * 25 16 15 27 27 C 1.34224 * 108.51650 * 359.60492 * 11 10 9 28 28 H 1.08999 * 109.47196 * 300.00311 * 1 2 3 29 29 H 1.09005 * 109.47033 * 60.00220 * 1 2 3 30 30 H 1.08999 * 109.47319 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.47158 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46879 * 299.99355 * 3 2 1 33 33 H 1.08999 * 109.47353 * 59.99785 * 3 2 1 34 34 H 1.08999 * 109.47174 * 300.00416 * 4 2 1 35 35 H 1.09005 * 109.46765 * 60.00185 * 4 2 1 36 36 H 1.08994 * 109.47521 * 180.02562 * 4 2 1 37 37 H 1.07998 * 125.99770 * 0.05687 * 9 8 6 38 38 H 1.09003 * 109.47273 * 184.69376 * 12 11 10 39 39 H 1.08995 * 109.47123 * 64.68447 * 12 11 10 40 40 H 1.08004 * 119.87387 * 359.97438 * 14 13 12 41 41 H 1.08005 * 120.13128 * 179.97438 * 15 14 13 42 42 H 0.97002 * 119.99654 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.12679 * 180.25842 * 25 16 15 44 44 H 1.08002 * 119.87887 * 179.74692 * 26 25 16 45 45 H 1.08003 * 126.29713 * 180.23082 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1856 6 6 1.6519 -1.9733 1.3386 7 8 0.9512 -2.5108 0.5037 8 6 2.1062 -2.7311 2.5171 9 6 2.9209 -2.2447 3.5646 10 7 3.0973 -3.2126 4.4210 11 7 2.4218 -4.3501 3.9655 12 6 2.3775 -5.6480 4.6435 13 6 3.7825 -6.1345 4.8894 14 6 4.4300 -5.7994 6.0686 15 6 5.7131 -6.2376 6.3035 16 6 6.3701 -7.0237 5.3389 17 6 7.6909 -7.4743 5.5666 18 1 8.0260 -8.4052 5.1335 19 6 8.5637 -6.7141 6.3532 20 7 9.6352 -7.2663 6.8616 21 14 8.1988 -4.9109 6.6771 22 1 7.4905 -4.7746 7.9751 23 1 9.4726 -4.1491 6.7259 24 1 7.3432 -4.3756 5.5878 25 6 5.7012 -7.3621 4.1480 26 6 4.4180 -6.9132 3.9345 27 6 1.8163 -4.0504 2.8056 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1391 36 1 3.1299 -0.7217 -1.2489 37 1 3.3228 -1.2455 3.6445 38 1 1.8485 -6.3670 4.0179 39 1 1.8575 -5.5430 5.5956 40 1 3.9257 -5.1915 6.8052 41 1 6.2159 -5.9751 7.2226 42 1 10.2400 -6.7394 7.4071 43 1 6.1944 -7.9685 3.4028 44 1 3.9040 -7.1683 3.0195 45 1 1.2134 -4.7180 2.2079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902876176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:05 Heat of formation + Delta-G solvation = -0.472572 kcal Electronic energy + Delta-G solvation = -26951.553789 eV Core-core repulsion = 23128.273004 eV Total energy + Delta-G solvation = -3823.280785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.31283 -40.33281 -38.01705 -36.82729 -34.45363 -34.07719 -33.06048 -30.70722 -30.16390 -29.81136 -27.60250 -27.56826 -27.34467 -24.38330 -23.46549 -21.82082 -21.17502 -20.74145 -20.12767 -19.40537 -17.72200 -17.54679 -16.60224 -16.02700 -15.87859 -15.77541 -15.26347 -14.57249 -14.43776 -14.25960 -14.00897 -13.91382 -13.80987 -13.68571 -12.95127 -12.78838 -12.66728 -12.45005 -12.38615 -12.09465 -12.08148 -12.06471 -11.98555 -11.64890 -11.54125 -11.44674 -10.89273 -10.84933 -10.71785 -10.46889 -10.34863 -10.04591 -9.88414 -9.68102 -9.39994 -9.23208 -8.61433 -7.82971 -7.72001 -7.08459 -4.62720 1.47375 2.07642 2.30867 2.61062 2.64183 2.94572 3.09190 3.18719 3.30325 3.33012 3.91694 4.35022 4.52240 4.57924 4.61436 4.72411 4.80000 4.96203 5.13536 5.26528 5.28587 5.33048 5.43014 5.45657 5.48543 5.56930 5.61786 5.64905 5.64965 5.79147 5.88202 5.92897 6.03475 6.07038 6.12998 6.45913 6.49606 6.59714 6.71440 6.76302 6.97510 7.04522 7.30241 7.41781 7.60675 7.75257 7.76270 7.98432 7.99428 8.22179 8.52305 8.66634 9.92687 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.002640 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.607211 B =10605.392015 C =11246.532426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.119 3.881 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.348 6.348 6 C 0.553 3.447 7 O -0.525 6.525 8 C -0.299 4.299 9 C 0.086 3.914 10 N -0.278 5.278 11 N -0.333 5.333 12 C 0.186 3.814 13 C -0.253 4.253 14 C -0.034 4.034 15 C -0.243 4.243 16 C 0.101 3.899 17 C -0.439 4.439 18 H 0.092 0.908 19 C 0.084 3.916 20 N -0.800 5.800 21 Si 0.913 3.087 22 H -0.269 1.269 23 H -0.290 1.290 24 H -0.242 1.242 25 C -0.213 4.213 26 C -0.059 4.059 27 C 0.131 3.869 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.190 0.810 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.288 0.712 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.098 12.605 -9.602 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.083 3.917 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.265 6.265 6 C 0.399 3.601 7 O -0.416 6.416 8 C -0.313 4.313 9 C -0.102 4.102 10 N -0.097 5.097 11 N -0.110 5.110 12 C 0.069 3.931 13 C -0.255 4.255 14 C -0.053 4.053 15 C -0.263 4.263 16 C 0.098 3.902 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.137 4.137 20 N -0.423 5.423 21 Si 0.739 3.261 22 H -0.195 1.195 23 H -0.217 1.217 24 H -0.165 1.165 25 C -0.233 4.233 26 C -0.078 4.078 27 C -0.023 4.023 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.206 0.794 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -14.489 11.932 -8.520 20.613 hybrid contribution -0.293 0.974 -0.689 1.229 sum -14.782 12.907 -9.209 21.677 Atomic orbital electron populations 1.22488 0.94219 1.04788 1.02427 1.22108 0.94267 0.92149 0.83221 1.21845 1.02332 0.92718 1.02873 1.22494 1.01787 1.03260 0.96492 1.86596 1.70028 1.25099 1.44782 1.19932 0.76281 0.79700 0.84144 1.90710 1.37145 1.70267 1.43500 1.19259 1.16344 0.95007 1.00643 1.24123 0.95877 0.99076 0.91088 1.77348 1.16966 0.92244 1.23155 1.49450 1.34588 1.10976 1.15938 1.20665 0.97487 0.77810 0.97181 1.18777 0.95916 1.11740 0.99106 1.20397 0.94393 0.95451 0.95096 1.21002 0.95749 1.09241 1.00269 1.17784 0.93250 0.89202 0.89980 1.19601 0.94841 1.07375 1.24879 0.88975 1.26227 0.94130 1.01738 0.91572 1.69692 1.11097 1.38661 1.22812 0.86277 0.77677 0.81184 0.80971 1.19476 1.21698 1.16466 1.20961 0.95758 1.08510 0.98057 1.20453 0.94724 0.96438 0.96197 1.22945 0.95212 0.95415 0.88753 0.92113 0.91326 0.89680 0.91411 0.90522 0.91501 0.89651 0.91325 0.91979 0.79367 0.88691 0.89595 0.88676 0.88099 0.90183 0.88079 0.89002 0.79797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.37 37.16 0.31 -1.42 16 2 C 0.12 1.21 1.13 -90.63 -0.10 1.10 16 3 C -0.14 -1.07 8.85 37.15 0.33 -0.74 16 4 C -0.18 -1.83 8.37 37.15 0.31 -1.52 16 5 O -0.35 -4.41 9.73 -40.64 -0.40 -4.80 16 6 C 0.55 7.73 7.26 34.41 0.25 7.98 16 7 O -0.53 -7.83 12.44 -19.29 -0.24 -8.07 16 8 C -0.30 -4.29 6.13 -105.08 -0.64 -4.93 16 9 C 0.09 1.28 11.87 -16.97 -0.20 1.07 16 10 N -0.28 -4.77 12.32 30.87 0.38 -4.39 16 11 N -0.33 -5.10 3.64 -61.97 -0.23 -5.33 16 12 C 0.19 2.67 6.60 -5.19 -0.03 2.63 16 13 C -0.25 -4.77 5.33 -104.33 -0.56 -5.32 16 14 C -0.03 -0.72 9.67 -39.66 -0.38 -1.10 16 15 C -0.24 -5.73 7.18 -38.88 -0.28 -6.01 16 16 C 0.10 2.50 5.11 -106.82 -0.55 1.96 16 17 C -0.44 -11.61 9.57 -37.74 -0.36 -11.98 16 18 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 19 C 0.08 2.16 5.40 -17.34 -0.09 2.06 16 20 N -0.80 -20.86 13.93 55.55 0.77 -20.09 16 21 Si 0.91 20.83 24.52 -169.99 -4.17 16.67 16 22 H -0.27 -5.95 6.71 56.52 0.38 -5.57 16 23 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.24 -5.80 6.86 56.52 0.39 -5.41 16 25 C -0.21 -4.80 9.80 -38.87 -0.38 -5.18 16 26 C -0.06 -1.17 9.67 -39.66 -0.38 -1.55 16 27 C 0.13 1.78 11.25 -16.55 -0.19 1.59 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.98 5.88 -51.93 -0.31 0.67 16 31 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 1.03 5.88 -51.93 -0.31 0.73 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.19 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.09 1.06 8.00 -51.93 -0.42 0.65 16 39 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.10 2.39 4.73 -52.48 -0.25 2.14 16 42 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 43 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.09 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.19 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -29.36 375.02 -7.53 -36.89 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.36 Total: 4.80 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -2.95 Total: -21.34 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.93 Total: -29.80 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.64 Total: -12.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.17 Total: 16.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.36 -7.53 -36.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902876176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.422 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds