Wall clock time and date at job start Tue Mar 31 2020 14:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47093 * 2 1 4 4 C 1.52994 * 109.47356 * 239.99431 * 2 1 3 5 5 O 1.45202 * 109.46958 * 119.99636 * 2 1 3 6 6 C 1.34753 * 117.00155 * 60.00078 * 5 2 1 7 7 O 1.21531 * 119.99608 * 0.02562 * 6 5 2 8 8 C 1.47287 * 120.00265 * 179.97438 * 6 5 2 9 9 C 1.41334 * 126.42600 * 359.97438 * 8 6 5 10 10 N 1.30439 * 108.01313 * 179.77239 * 9 8 6 11 11 N 1.39924 * 108.91588 * 0.38582 * 10 9 8 12 12 C 1.46502 * 125.74330 * 179.87516 * 11 10 9 13 13 C 1.50707 * 109.46794 * 304.68520 * 12 11 10 14 14 C 1.38632 * 119.74798 * 90.00171 * 13 12 11 15 15 C 1.37610 * 120.24865 * 180.02562 * 14 13 12 16 16 C 1.40716 * 119.74899 * 0.27687 * 15 14 13 17 17 C 1.41392 * 120.24802 * 179.69783 * 16 15 14 18 18 H 1.08007 * 119.99541 * 150.23496 * 17 16 15 19 19 C 1.39945 * 120.00071 * 330.23912 * 17 16 15 20 20 N 1.30822 * 119.99676 * 161.71500 * 19 17 16 21 21 Si 1.86797 * 120.00031 * 341.71640 * 19 17 16 22 22 H 1.48495 * 109.47222 * 95.41135 * 21 19 17 23 23 H 1.48503 * 109.46947 * 215.41188 * 21 19 17 24 24 H 1.48504 * 109.47122 * 335.41193 * 21 19 17 25 25 C 1.40722 * 119.50521 * 359.47220 * 16 15 14 26 26 C 1.37614 * 119.74522 * 0.50698 * 25 16 15 27 27 C 1.34224 * 108.51650 * 359.60492 * 11 10 9 28 28 H 1.08999 * 109.47196 * 300.00311 * 1 2 3 29 29 H 1.09005 * 109.47033 * 60.00220 * 1 2 3 30 30 H 1.08999 * 109.47319 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.47158 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46879 * 299.99355 * 3 2 1 33 33 H 1.08999 * 109.47353 * 59.99785 * 3 2 1 34 34 H 1.08999 * 109.47174 * 300.00416 * 4 2 1 35 35 H 1.09005 * 109.46765 * 60.00185 * 4 2 1 36 36 H 1.08994 * 109.47521 * 180.02562 * 4 2 1 37 37 H 1.07998 * 125.99770 * 0.05687 * 9 8 6 38 38 H 1.09003 * 109.47273 * 184.69376 * 12 11 10 39 39 H 1.08995 * 109.47123 * 64.68447 * 12 11 10 40 40 H 1.08004 * 119.87387 * 359.97438 * 14 13 12 41 41 H 1.08005 * 120.13128 * 179.97438 * 15 14 13 42 42 H 0.97002 * 119.99654 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.12679 * 180.25842 * 25 16 15 44 44 H 1.08002 * 119.87887 * 179.74692 * 26 25 16 45 45 H 1.08003 * 126.29713 * 180.23082 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1856 6 6 1.6519 -1.9733 1.3386 7 8 0.9512 -2.5108 0.5037 8 6 2.1062 -2.7311 2.5171 9 6 2.9209 -2.2447 3.5646 10 7 3.0973 -3.2126 4.4210 11 7 2.4218 -4.3501 3.9655 12 6 2.3775 -5.6480 4.6435 13 6 3.7825 -6.1345 4.8894 14 6 4.4300 -5.7994 6.0686 15 6 5.7131 -6.2376 6.3035 16 6 6.3701 -7.0237 5.3389 17 6 7.6909 -7.4743 5.5666 18 1 8.0260 -8.4052 5.1335 19 6 8.5637 -6.7141 6.3532 20 7 9.6352 -7.2663 6.8616 21 14 8.1988 -4.9109 6.6771 22 1 7.4905 -4.7746 7.9751 23 1 9.4726 -4.1491 6.7259 24 1 7.3432 -4.3756 5.5878 25 6 5.7012 -7.3621 4.1480 26 6 4.4180 -6.9132 3.9345 27 6 1.8163 -4.0504 2.8056 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1391 36 1 3.1299 -0.7217 -1.2489 37 1 3.3228 -1.2455 3.6445 38 1 1.8485 -6.3670 4.0179 39 1 1.8575 -5.5430 5.5956 40 1 3.9257 -5.1915 6.8052 41 1 6.2159 -5.9751 7.2226 42 1 10.2400 -6.7394 7.4071 43 1 6.1944 -7.9685 3.4028 44 1 3.9040 -7.1683 3.0195 45 1 1.2134 -4.7180 2.2079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902876176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:04 Heat of formation + Delta-G solvation = -15.550254 kcal Electronic energy + Delta-G solvation = -26952.207606 eV Core-core repulsion = 23128.273004 eV Total energy + Delta-G solvation = -3823.934603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.40484 -41.31566 -39.70619 -37.79030 -36.03383 -35.03584 -34.52586 -32.21345 -31.57866 -31.27842 -28.79665 -28.31668 -28.24400 -25.85225 -24.63644 -23.46389 -22.51462 -21.90420 -21.46244 -20.40149 -19.41290 -18.79455 -17.54226 -17.48220 -17.01361 -16.89702 -16.59388 -15.91975 -15.70928 -15.55713 -15.24417 -15.21440 -15.00398 -14.67224 -14.55768 -14.14232 -13.87005 -13.81651 -13.30618 -13.26113 -13.21766 -13.04592 -12.86246 -12.79824 -12.68746 -12.60653 -12.42017 -12.34106 -12.09997 -11.83938 -11.68377 -11.49973 -11.31425 -11.04810 -10.89168 -10.56611 -9.75212 -9.54682 -9.47400 -8.97708 -6.56990 0.40173 0.58048 0.85723 1.16530 1.20930 1.31870 1.42750 1.54447 1.94724 2.06779 2.26790 2.56577 3.43335 3.59647 3.77732 3.84069 3.85861 3.98367 4.02981 4.07567 4.07657 4.32328 4.34379 4.51248 4.55572 4.61647 4.65757 4.68001 4.70406 4.81277 4.87429 4.92390 4.98503 5.02823 5.03265 5.17069 5.26479 5.31809 5.35772 5.45405 5.55519 5.62396 5.68123 5.85127 5.90887 5.95570 6.20055 6.36178 6.61995 6.68110 6.77923 6.96677 8.10483 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.002640 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.607211 B =10605.392015 C =11246.532426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.107 3.893 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.355 6.355 6 C 0.553 3.447 7 O -0.538 6.538 8 C -0.313 4.313 9 C 0.090 3.910 10 N -0.322 5.322 11 N -0.342 5.342 12 C 0.185 3.815 13 C -0.224 4.224 14 C -0.044 4.044 15 C -0.257 4.257 16 C 0.080 3.920 17 C -0.483 4.483 18 H 0.059 0.941 19 C 0.051 3.949 20 N -0.843 5.843 21 Si 0.965 3.035 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.229 4.229 26 C -0.057 4.057 27 C 0.144 3.856 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.206 0.794 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.295 0.705 43 H 0.101 0.899 44 H 0.132 0.868 45 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.586 14.752 -11.046 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.071 3.929 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.272 6.272 6 C 0.400 3.600 7 O -0.430 6.430 8 C -0.326 4.326 9 C -0.098 4.098 10 N -0.141 5.141 11 N -0.118 5.118 12 C 0.068 3.932 13 C -0.226 4.226 14 C -0.063 4.063 15 C -0.276 4.276 16 C 0.077 3.923 17 C -0.512 4.512 18 H 0.077 0.923 19 C -0.164 4.164 20 N -0.469 5.469 21 Si 0.789 3.211 22 H -0.184 1.184 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.248 4.248 26 C -0.076 4.076 27 C -0.010 4.010 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.223 0.777 38 H 0.157 0.843 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.150 0.850 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -17.976 14.087 -9.959 24.915 hybrid contribution 0.431 0.386 -0.436 0.725 sum -17.545 14.473 -10.395 25.007 Atomic orbital electron populations 1.22447 0.93699 1.03677 1.03681 1.22478 0.94851 0.93205 0.82333 1.21875 1.02254 0.91043 1.04209 1.22466 1.01535 1.02214 0.97551 1.86587 1.70053 1.24530 1.46031 1.19911 0.76058 0.80120 0.83895 1.90712 1.37704 1.70658 1.43885 1.19471 1.16606 0.95729 1.00829 1.24467 0.95182 0.99480 0.90629 1.77303 1.18771 0.93393 1.24663 1.49227 1.35299 1.10716 1.16600 1.20858 0.94542 0.78249 0.99581 1.19345 0.97738 1.08316 0.97154 1.20732 0.93486 0.95453 0.96635 1.21103 0.97069 1.09590 0.99879 1.17938 0.92871 0.90197 0.91290 1.19549 0.96579 1.07511 1.27576 0.92264 1.26763 0.93929 1.04359 0.91385 1.69714 1.12448 1.39891 1.24882 0.85493 0.77626 0.77637 0.80331 1.18406 1.20278 1.18524 1.21190 0.97288 1.08844 0.97497 1.20875 0.93615 0.95346 0.97759 1.23447 0.94214 0.95565 0.87741 0.91859 0.89106 0.91869 0.91578 0.88185 0.91185 0.91911 0.89031 0.92313 0.77704 0.84316 0.87717 0.86597 0.88941 0.89452 0.88058 0.85033 0.76564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 8.37 71.98 0.60 -2.36 16 2 C 0.11 1.93 1.13 -10.80 -0.01 1.92 16 3 C -0.14 -1.70 8.85 71.98 0.64 -1.06 16 4 C -0.18 -3.25 8.37 71.98 0.60 -2.65 16 5 O -0.35 -8.34 9.73 -56.64 -0.55 -8.89 16 6 C 0.55 14.36 7.26 70.20 0.51 14.87 16 7 O -0.54 -15.01 12.44 19.74 0.25 -14.76 16 8 C -0.31 -8.13 6.13 -20.16 -0.12 -8.25 16 9 C 0.09 2.46 11.87 85.66 1.02 3.47 16 10 N -0.32 -10.17 12.32 -56.25 -0.69 -10.86 16 11 N -0.34 -9.06 3.64 -349.97 -1.27 -10.33 16 12 C 0.19 4.35 6.60 85.63 0.57 4.91 16 13 C -0.22 -7.61 5.33 -19.67 -0.10 -7.72 16 14 C -0.04 -1.76 9.67 22.22 0.21 -1.54 16 15 C -0.26 -12.13 7.18 22.73 0.16 -11.96 16 16 C 0.08 4.05 5.11 -21.29 -0.11 3.95 16 17 C -0.48 -27.21 9.57 23.46 0.22 -26.99 16 18 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 19 C 0.05 2.77 5.40 85.26 0.46 3.23 16 20 N -0.84 -46.48 13.93 21.83 0.30 -46.18 16 21 Si 0.97 44.32 24.52 68.60 1.68 46.00 16 22 H -0.26 -11.26 6.71 99.48 0.67 -10.60 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.26 -12.63 6.86 99.48 0.68 -11.94 16 25 C -0.23 -10.25 9.80 22.73 0.22 -10.03 16 26 C -0.06 -2.08 9.67 22.22 0.21 -1.87 16 27 C 0.14 3.31 11.25 84.30 0.95 4.26 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.06 1.35 5.88 -2.39 -0.01 1.34 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.43 5.88 -2.39 -0.01 1.42 16 35 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.21 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.14 2.13 8.00 -2.39 -0.02 2.11 16 39 H 0.10 2.15 8.08 -2.39 -0.02 2.13 16 40 H 0.12 4.09 8.06 -2.91 -0.02 4.06 16 41 H 0.09 4.45 4.73 -2.91 -0.01 4.43 16 42 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 43 H 0.10 4.42 8.06 -2.91 -0.02 4.39 16 44 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 45 H 0.22 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -67.69 375.02 6.68 -61.01 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.93 Total: 21.83 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 6.03 Total: -37.82 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -1.66 Total: -67.37 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.31 Total: -23.65 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.68 Total: 46.00 kcal Total: -67.69 6.68 -61.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902876176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.459 kcal (2) G-P(sol) polarization free energy of solvation -67.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds