Wall clock time and date at job start Tue Mar 31 2020 16:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35769 * 117.00044 * 2 1 4 4 C 1.39921 * 119.59718 * 0.02562 * 3 2 1 5 5 C 1.35938 * 120.77246 * 180.02562 * 4 3 2 6 6 C 1.40630 * 119.83933 * 359.95445 * 5 4 3 7 7 C 1.40407 * 121.08102 * 180.02562 * 6 5 4 8 8 C 1.39111 * 118.00139 * 180.02562 * 7 6 5 9 9 C 1.47683 * 120.25538 * 179.97438 * 8 7 6 10 10 O 1.21580 * 119.99993 * 30.75857 * 9 8 7 11 11 N 1.34776 * 120.00135 * 210.75047 * 9 8 7 12 12 C 1.46497 * 119.99877 * 143.15451 * 11 9 8 13 13 C 1.50700 * 109.47119 * 90.00410 * 12 11 9 14 14 H 1.07995 * 120.00055 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99809 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00333 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99822 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46973 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47320 * 120.00104 * 17 15 13 20 20 H 1.48501 * 109.46916 * 240.00138 * 17 15 13 21 21 C 1.46499 * 119.99897 * 323.15768 * 11 9 8 22 22 C 1.52992 * 109.47490 * 319.43706 * 21 11 9 23 23 C 1.53005 * 109.47021 * 79.43800 * 21 11 9 24 24 C 1.40573 * 119.48280 * 0.25195 * 8 7 6 25 25 N 1.30806 * 121.50911 * 359.48449 * 24 8 7 26 26 C 1.33903 * 121.71580 * 0.50372 * 25 24 8 27 27 C 1.37699 * 119.59416 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47286 * 60.00590 * 1 2 3 29 29 H 1.09000 * 109.47079 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47603 * 300.00311 * 1 2 3 31 31 H 1.08007 * 119.61295 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.07771 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.99700 * 0.04640 * 7 6 5 34 34 H 1.09012 * 109.47227 * 210.00270 * 12 11 9 35 35 H 1.09004 * 109.47109 * 330.00030 * 12 11 9 36 36 H 0.97001 * 120.00328 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.46942 * 199.43703 * 21 11 9 38 38 H 1.09002 * 109.47275 * 50.71397 * 22 21 11 39 39 H 1.08994 * 109.47582 * 170.71832 * 22 21 11 40 40 H 1.09004 * 109.47016 * 290.71961 * 22 21 11 41 41 H 1.09002 * 109.46896 * 99.49404 * 23 21 11 42 42 H 1.09000 * 109.46836 * 219.48926 * 23 21 11 43 43 H 1.08992 * 109.47376 * 339.49735 * 23 21 11 44 44 H 1.08001 * 119.24700 * 179.74506 * 24 8 7 45 45 H 1.07997 * 120.16592 * 0.03816 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2751 2.3778 0.0005 5 6 1.8672 3.6014 0.0000 6 6 3.2701 3.6999 -0.0001 7 6 3.9090 4.9502 -0.0001 8 6 5.2999 4.9728 -0.0007 9 6 6.0231 6.2605 -0.0013 10 8 5.5322 7.2337 0.5372 11 7 7.2274 6.3567 -0.5987 12 6 7.5927 7.5797 -1.3177 13 6 8.2676 8.5372 -0.3696 14 1 8.4106 8.2621 0.6648 15 6 8.7036 9.7641 -0.8233 16 7 8.5300 10.0990 -2.0832 17 14 9.5395 10.9512 0.3520 18 1 9.6121 10.3407 1.7037 19 1 10.9123 11.2436 -0.1329 20 1 8.7592 12.2128 0.4194 21 6 8.1711 5.2383 -0.5291 22 6 8.1393 4.6308 0.8747 23 6 7.7766 4.1736 -1.5546 24 6 6.0116 3.7606 -0.0068 25 7 5.3961 2.6064 -0.0018 26 6 4.0598 2.5213 -0.0007 27 6 3.4209 1.2720 -0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.1973 2.3064 0.0005 32 1 1.2618 4.4957 0.0009 33 1 3.3377 5.8667 0.0008 34 1 8.2748 7.3329 -2.1315 35 1 6.6944 8.0440 -1.7247 36 1 8.8364 10.9623 -2.4022 37 1 9.1769 5.5975 -0.7468 38 1 7.1074 4.4226 1.1573 39 1 8.7123 3.7036 0.8825 40 1 8.5756 5.3335 1.5847 41 1 8.3998 4.2762 -2.4429 42 1 7.9194 3.1829 -1.1230 43 1 6.7296 4.3032 -1.8285 44 1 7.0914 3.7827 -0.0115 45 1 4.0053 0.3638 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906481259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:58 Heat of formation + Delta-G solvation = 68.691955 kcal Electronic energy + Delta-G solvation = -27966.495205 eV Core-core repulsion = 24146.213619 eV Total energy + Delta-G solvation = -3820.281586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.49245 -40.19429 -38.75349 -36.93208 -35.70544 -33.48575 -33.11143 -31.62785 -30.36417 -29.93471 -27.74166 -27.20636 -26.92259 -24.78356 -23.75584 -22.52424 -22.28163 -21.76254 -19.57177 -18.56386 -17.59569 -17.00362 -16.49299 -16.22777 -16.09683 -15.88532 -15.53186 -15.08529 -14.72005 -14.36876 -14.31357 -14.08503 -13.94727 -13.46870 -13.28533 -13.03503 -12.70529 -12.50937 -12.44944 -12.25765 -12.03068 -11.87101 -11.63478 -11.40531 -11.20232 -11.17865 -11.02549 -10.84010 -10.61800 -10.15777 -10.12833 -10.04953 -9.62735 -9.58650 -9.01092 -8.59109 -8.42944 -8.09311 -7.60530 -6.03057 -4.06755 0.25616 0.63853 1.85545 2.57997 2.88735 3.31389 3.34569 3.39246 3.44291 3.74809 4.07598 4.30411 4.39532 4.46694 4.62432 4.67733 4.74937 4.77908 4.80357 4.82891 4.97525 5.01060 5.09715 5.19977 5.22054 5.31329 5.39232 5.60943 5.66217 5.73845 5.80205 5.82231 5.87120 5.98529 6.01524 6.17667 6.21850 6.24811 6.35544 6.45957 6.61097 7.03720 7.05399 7.30211 7.57777 7.91884 7.93772 8.22427 8.33647 8.76091 8.99899 9.58139 11.04509 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.002794 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.110597 B =10019.437115 C =10573.266079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.146 3.854 4 C -0.203 4.203 5 C -0.041 4.041 6 C -0.147 4.147 7 C 0.007 3.993 8 C -0.202 4.202 9 C 0.568 3.432 10 O -0.506 6.506 11 N -0.614 5.614 12 C 0.255 3.745 13 C -0.518 4.518 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.134 3.866 22 C -0.214 4.214 23 C -0.187 4.187 24 C 0.113 3.887 25 N -0.496 5.496 26 C 0.175 3.825 27 C -0.148 4.148 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.147 0.853 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.240 0.760 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.427 -19.642 2.327 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.099 3.901 4 C -0.221 4.221 5 C -0.060 4.060 6 C -0.150 4.150 7 C -0.019 4.019 8 C -0.208 4.208 9 C 0.354 3.646 10 O -0.380 6.380 11 N -0.348 5.348 12 C 0.136 3.864 13 C -0.557 4.557 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C 0.030 3.970 22 C -0.271 4.271 23 C -0.245 4.245 24 C -0.056 4.056 25 N -0.206 5.206 26 C 0.054 3.946 27 C -0.168 4.168 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.255 0.745 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.205 -19.977 2.482 23.542 hybrid contribution -0.421 1.711 0.486 1.828 sum -12.627 -18.266 2.968 22.403 Atomic orbital electron populations 1.23099 0.78215 1.04107 1.01502 1.86064 1.21513 1.26748 1.88408 1.18906 0.91922 0.84114 0.95204 1.21024 1.00336 0.92191 1.08556 1.20880 0.92893 0.97757 0.94463 1.18736 0.94595 0.93967 1.07665 1.21856 0.93436 0.97161 0.89476 1.21520 0.95022 0.96620 1.07661 1.17821 0.81962 0.86428 0.78344 1.90760 1.69167 1.39457 1.38662 1.47943 1.13486 1.17708 1.55626 1.19292 0.96391 0.79541 0.91151 1.21528 1.37176 1.00468 0.96505 0.92065 1.24952 0.96213 0.97952 0.95225 1.69933 1.47442 1.22181 1.14306 0.86449 0.78863 0.80972 0.81185 1.19765 1.21078 1.20998 1.21094 0.95456 0.87026 0.93468 1.23264 1.03775 1.02116 0.97897 1.23024 1.02633 0.98616 1.00272 1.26676 1.05504 0.86309 0.87144 1.68230 1.08280 1.27880 1.16185 1.18635 0.89844 0.91651 0.94428 1.19992 0.90897 0.97265 1.08632 0.92467 0.88105 0.92486 0.84884 0.84626 0.83534 0.94474 0.94983 0.92852 0.87679 0.89703 0.90248 0.90678 0.91668 0.90902 0.91414 0.74503 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.80 101.05 0.99 1.13 16 2 O -0.31 -3.11 10.47 -19.02 -0.20 -3.30 16 3 C 0.15 1.63 6.67 -39.15 -0.26 1.36 16 4 C -0.20 -1.96 8.94 -39.78 -0.36 -2.31 16 5 C -0.04 -0.45 9.75 -39.50 -0.39 -0.83 16 6 C -0.15 -2.05 5.74 -106.79 -0.61 -2.66 16 7 C 0.01 0.11 9.46 -38.44 -0.36 -0.26 16 8 C -0.20 -3.47 4.95 -104.84 -0.52 -3.99 16 9 C 0.57 11.92 6.05 -12.40 -0.08 11.84 16 10 O -0.51 -12.58 17.03 5.30 0.09 -12.49 16 11 N -0.61 -12.73 2.33 -168.63 -0.39 -13.13 16 12 C 0.25 6.44 5.07 -5.20 -0.03 6.41 16 13 C -0.52 -14.46 9.27 -34.44 -0.32 -14.78 16 14 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 17 Si 0.90 21.91 29.54 -169.99 -5.02 16.88 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.13 2.15 3.20 -67.93 -0.22 1.93 16 22 C -0.21 -2.97 7.76 37.15 0.29 -2.68 16 23 C -0.19 -2.52 8.04 37.16 0.30 -2.22 16 24 C 0.11 1.73 5.24 -17.11 -0.09 1.64 16 25 N -0.50 -7.56 10.30 -16.64 -0.17 -7.73 16 26 C 0.17 2.56 6.60 -84.80 -0.56 2.00 16 27 C -0.15 -1.91 9.93 -39.00 -0.39 -2.29 16 28 H 0.06 0.26 7.64 -51.93 -0.40 -0.13 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.26 7.63 -51.93 -0.40 -0.14 16 31 H 0.13 0.88 6.23 -52.48 -0.33 0.55 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.15 2.11 7.97 -52.49 -0.42 1.69 16 34 H 0.04 0.94 8.07 -51.92 -0.42 0.52 16 35 H 0.03 0.90 8.03 -51.93 -0.42 0.48 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.11 1.69 7.99 -51.93 -0.42 1.27 16 38 H 0.08 1.26 3.60 -65.06 -0.23 1.03 16 39 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.82 6.50 -51.93 -0.34 0.48 16 43 H 0.07 1.02 5.56 -51.93 -0.29 0.73 16 44 H 0.24 3.30 0.73 -110.17 -0.08 3.22 16 45 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -33.79 360.71 -8.01 -41.81 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.80 Total: 2.26 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.69 Total: -4.18 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.17 Total: -46.42 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.11 Total: -15.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.79 -8.01 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906481259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.499 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds