Wall clock time and date at job start Tue Mar 31 2020 16:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35769 * 117.00044 * 2 1 4 4 C 1.39921 * 119.59718 * 0.02562 * 3 2 1 5 5 C 1.35938 * 120.77246 * 180.02562 * 4 3 2 6 6 C 1.40630 * 119.83933 * 359.95445 * 5 4 3 7 7 C 1.40407 * 121.08102 * 180.02562 * 6 5 4 8 8 C 1.39111 * 118.00139 * 180.02562 * 7 6 5 9 9 C 1.47683 * 120.25538 * 179.97438 * 8 7 6 10 10 O 1.21580 * 119.99993 * 30.75857 * 9 8 7 11 11 N 1.34776 * 120.00135 * 210.75047 * 9 8 7 12 12 C 1.46497 * 119.99877 * 143.15451 * 11 9 8 13 13 C 1.50700 * 109.47119 * 90.00410 * 12 11 9 14 14 H 1.07995 * 120.00055 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99809 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00333 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99822 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46973 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47320 * 120.00104 * 17 15 13 20 20 H 1.48501 * 109.46916 * 240.00138 * 17 15 13 21 21 C 1.46499 * 119.99897 * 323.15768 * 11 9 8 22 22 C 1.52992 * 109.47490 * 319.43706 * 21 11 9 23 23 C 1.53005 * 109.47021 * 79.43800 * 21 11 9 24 24 C 1.40573 * 119.48280 * 0.25195 * 8 7 6 25 25 N 1.30806 * 121.50911 * 359.48449 * 24 8 7 26 26 C 1.33903 * 121.71580 * 0.50372 * 25 24 8 27 27 C 1.37699 * 119.59416 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47286 * 60.00590 * 1 2 3 29 29 H 1.09000 * 109.47079 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47603 * 300.00311 * 1 2 3 31 31 H 1.08007 * 119.61295 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.07771 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.99700 * 0.04640 * 7 6 5 34 34 H 1.09012 * 109.47227 * 210.00270 * 12 11 9 35 35 H 1.09004 * 109.47109 * 330.00030 * 12 11 9 36 36 H 0.97001 * 120.00328 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.46942 * 199.43703 * 21 11 9 38 38 H 1.09002 * 109.47275 * 50.71397 * 22 21 11 39 39 H 1.08994 * 109.47582 * 170.71832 * 22 21 11 40 40 H 1.09004 * 109.47016 * 290.71961 * 22 21 11 41 41 H 1.09002 * 109.46896 * 99.49404 * 23 21 11 42 42 H 1.09000 * 109.46836 * 219.48926 * 23 21 11 43 43 H 1.08992 * 109.47376 * 339.49735 * 23 21 11 44 44 H 1.08001 * 119.24700 * 179.74506 * 24 8 7 45 45 H 1.07997 * 120.16592 * 0.03816 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2751 2.3778 0.0005 5 6 1.8672 3.6014 0.0000 6 6 3.2701 3.6999 -0.0001 7 6 3.9090 4.9502 -0.0001 8 6 5.2999 4.9728 -0.0007 9 6 6.0231 6.2605 -0.0013 10 8 5.5322 7.2337 0.5372 11 7 7.2274 6.3567 -0.5987 12 6 7.5927 7.5797 -1.3177 13 6 8.2676 8.5372 -0.3696 14 1 8.4106 8.2621 0.6648 15 6 8.7036 9.7641 -0.8233 16 7 8.5300 10.0990 -2.0832 17 14 9.5395 10.9512 0.3520 18 1 9.6121 10.3407 1.7037 19 1 10.9123 11.2436 -0.1329 20 1 8.7592 12.2128 0.4194 21 6 8.1711 5.2383 -0.5291 22 6 8.1393 4.6308 0.8747 23 6 7.7766 4.1736 -1.5546 24 6 6.0116 3.7606 -0.0068 25 7 5.3961 2.6064 -0.0018 26 6 4.0598 2.5213 -0.0007 27 6 3.4209 1.2720 -0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.1973 2.3064 0.0005 32 1 1.2618 4.4957 0.0009 33 1 3.3377 5.8667 0.0008 34 1 8.2748 7.3329 -2.1315 35 1 6.6944 8.0440 -1.7247 36 1 8.8364 10.9623 -2.4022 37 1 9.1769 5.5975 -0.7468 38 1 7.1074 4.4226 1.1573 39 1 8.7123 3.7036 0.8825 40 1 8.5756 5.3335 1.5847 41 1 8.3998 4.2762 -2.4429 42 1 7.9194 3.1829 -1.1230 43 1 6.7296 4.3032 -1.8285 44 1 7.0914 3.7827 -0.0115 45 1 4.0053 0.3638 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906481259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:56 Heat of formation + Delta-G solvation = 46.779780 kcal Electronic energy + Delta-G solvation = -27967.445388 eV Core-core repulsion = 24146.213619 eV Total energy + Delta-G solvation = -3821.231770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.69156 -41.22518 -39.86280 -38.37334 -36.84003 -35.26982 -34.36622 -33.35994 -31.34525 -31.02288 -29.16907 -28.33028 -28.05358 -26.00033 -25.12372 -24.12605 -23.32627 -23.06333 -20.78514 -19.52876 -18.73980 -18.70416 -18.12788 -17.43050 -17.11088 -16.82693 -16.72799 -16.48163 -16.27521 -15.70694 -15.52727 -15.28074 -15.10790 -14.81477 -14.30314 -14.26507 -14.10178 -13.71463 -13.62822 -13.42753 -13.32224 -13.19027 -12.90837 -12.79698 -12.66860 -12.51650 -12.29307 -12.14141 -12.08466 -11.96400 -11.66599 -11.29309 -11.17132 -11.07329 -10.62083 -10.36859 -9.57958 -9.40624 -9.03059 -8.19107 -6.32421 -0.79877 -0.41932 0.79017 1.36535 1.38741 1.42236 1.51128 1.97975 2.16466 2.22411 2.42792 2.98494 3.09087 3.26524 3.43790 3.53801 3.65255 3.70308 3.79065 3.83804 3.97746 4.09568 4.14197 4.28021 4.39288 4.43534 4.53411 4.57570 4.61346 4.70881 4.75288 4.79139 4.86528 4.96980 5.03824 5.07908 5.09577 5.11699 5.16693 5.22241 5.32558 5.34410 5.55474 5.64380 5.89964 6.08636 6.30339 6.67871 6.76633 6.79966 7.13241 7.38217 8.86575 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.002794 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.110597 B =10019.437115 C =10573.266079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.162 3.838 4 C -0.191 4.191 5 C -0.040 4.040 6 C -0.162 4.162 7 C 0.011 3.989 8 C -0.228 4.228 9 C 0.569 3.431 10 O -0.562 6.562 11 N -0.619 5.619 12 C 0.270 3.730 13 C -0.532 4.532 14 H 0.048 0.952 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.962 3.038 18 H -0.272 1.272 19 H -0.269 1.269 20 H -0.282 1.282 21 C 0.126 3.874 22 C -0.209 4.209 23 C -0.178 4.178 24 C 0.119 3.881 25 N -0.503 5.503 26 C 0.161 3.839 27 C -0.173 4.173 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.071 0.929 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.034 0.966 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.051 0.949 44 H 0.251 0.749 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 -21.973 2.856 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.113 3.887 4 C -0.209 4.209 5 C -0.058 4.058 6 C -0.164 4.164 7 C -0.015 4.015 8 C -0.234 4.234 9 C 0.358 3.642 10 O -0.440 6.440 11 N -0.352 5.352 12 C 0.149 3.851 13 C -0.571 4.571 14 H 0.067 0.933 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.194 1.194 20 H -0.208 1.208 21 C 0.022 3.978 22 C -0.266 4.266 23 C -0.235 4.235 24 C -0.051 4.051 25 N -0.212 5.212 26 C 0.041 3.959 27 C -0.193 4.193 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.090 0.910 31 H 0.190 0.810 32 H 0.181 0.819 33 H 0.166 0.834 34 H 0.052 0.948 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.141 0.859 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.070 0.930 44 H 0.265 0.735 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.655 -22.372 3.003 26.381 hybrid contribution -0.209 2.248 0.301 2.278 sum -13.864 -20.124 3.304 24.660 Atomic orbital electron populations 1.23495 0.75672 1.06112 1.02885 1.86073 1.24106 1.26089 1.87644 1.19052 0.91602 0.85244 0.92762 1.21412 1.02185 0.90917 1.06359 1.21200 0.91597 0.99535 0.93512 1.18883 0.96174 0.92797 1.08523 1.22008 0.92962 0.98201 0.88355 1.21160 0.95587 0.95135 1.11513 1.18377 0.81623 0.87333 0.76895 1.90707 1.70180 1.41765 1.41390 1.47928 1.14650 1.17617 1.55024 1.18803 0.94140 0.81092 0.91042 1.21730 1.37549 1.01559 0.96224 0.93329 1.25779 0.96811 0.99589 0.96875 1.70030 1.48171 1.22833 1.15815 0.85441 0.78391 0.78429 0.78982 1.19692 1.19372 1.20817 1.21415 0.94185 0.86350 0.95800 1.23249 1.03932 1.03490 0.95895 1.22906 1.01697 0.98956 0.99989 1.26687 1.05800 0.85555 0.87017 1.68249 1.08970 1.27363 1.16650 1.18943 0.89843 0.92627 0.94449 1.20050 0.92051 0.96638 1.10557 0.91026 0.86080 0.91016 0.81037 0.81938 0.83359 0.94775 0.98792 0.92466 0.87982 0.90421 0.85919 0.92155 0.90667 0.87940 0.93006 0.73497 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.80 113.37 1.11 1.19 16 2 O -0.33 -5.38 10.47 -90.97 -0.95 -6.33 16 3 C 0.16 3.14 6.67 22.55 0.15 3.29 16 4 C -0.19 -2.96 8.94 22.14 0.20 -2.76 16 5 C -0.04 -0.76 9.75 22.32 0.22 -0.54 16 6 C -0.16 -4.35 5.74 -21.27 -0.12 -4.47 16 7 C 0.01 0.34 9.46 23.01 0.22 0.56 16 8 C -0.23 -8.12 4.95 -20.00 -0.10 -8.22 16 9 C 0.57 25.27 6.05 86.74 0.52 25.80 16 10 O -0.56 -29.86 17.03 -3.97 -0.07 -29.93 16 11 N -0.62 -27.05 2.33 -805.70 -1.88 -28.93 16 12 C 0.27 14.44 5.07 85.63 0.43 14.88 16 13 C -0.53 -30.96 9.27 25.60 0.24 -30.72 16 14 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 15 C 0.01 0.47 5.46 84.65 0.46 0.93 16 16 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 17 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 18 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 21 C 0.13 4.07 3.20 44.99 0.14 4.21 16 22 C -0.21 -5.73 7.76 71.98 0.56 -5.17 16 23 C -0.18 -4.67 8.04 71.98 0.58 -4.09 16 24 C 0.12 3.63 5.24 85.42 0.45 4.08 16 25 N -0.50 -15.01 10.30 -206.57 -2.13 -17.14 16 26 C 0.16 4.59 6.60 40.23 0.27 4.85 16 27 C -0.17 -4.20 9.93 22.65 0.22 -3.98 16 28 H 0.07 0.32 7.64 -2.39 -0.02 0.30 16 29 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.32 7.63 -2.39 -0.02 0.30 16 31 H 0.17 1.33 6.23 -2.91 -0.02 1.31 16 32 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.15 4.45 7.97 -2.91 -0.02 4.43 16 34 H 0.03 1.82 8.07 -2.38 -0.02 1.80 16 35 H -0.01 -0.36 8.03 -2.39 -0.02 -0.38 16 36 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.10 3.34 7.99 -2.39 -0.02 3.32 16 38 H 0.08 2.32 3.60 -14.72 -0.05 2.27 16 39 H 0.12 2.27 7.87 -2.39 -0.02 2.25 16 40 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.10 2.09 6.50 -2.39 -0.02 2.07 16 43 H 0.05 1.57 5.56 -2.39 -0.01 1.56 16 44 H 0.25 6.71 0.73 -57.09 -0.04 6.67 16 45 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -77.52 360.71 3.78 -73.74 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.94 Total: 16.41 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.55 Total: -0.16 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -3.72 Total: -101.48 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -1.02 Total: -36.26 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.52 3.78 -73.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906481259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.525 kcal (2) G-P(sol) polarization free energy of solvation -77.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds