Wall clock time and date at job start Tue Mar 31 2020 16:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46901 * 109.47234 * 222.72984 * 3 2 1 5 5 C 1.46847 * 110.99897 * 66.04308 * 4 3 2 6 6 C 1.53035 * 109.51177 * 185.84632 * 5 4 3 7 7 C 1.53120 * 109.28132 * 300.80875 * 6 5 4 8 8 C 1.53110 * 109.15372 * 57.66887 * 7 6 5 9 9 H 1.09002 * 109.50362 * 62.28444 * 8 7 6 10 10 N 1.46502 * 109.50733 * 182.40009 * 8 7 6 11 11 C 1.34770 * 120.00098 * 274.80929 * 10 8 7 12 12 O 1.21597 * 120.00082 * 359.97438 * 11 10 8 13 13 C 1.47532 * 120.00031 * 179.97438 * 11 10 8 14 14 C 1.39667 * 120.19786 * 359.97438 * 13 11 10 15 15 C 1.37834 * 119.91754 * 179.97438 * 14 13 11 16 16 C 1.38567 * 120.32474 * 359.97226 * 15 14 13 17 17 C 1.38024 * 120.40392 * 0.02562 * 16 15 14 18 18 C 1.38840 * 120.07189 * 359.74591 * 17 16 15 19 19 O 1.35513 * 120.16049 * 180.27781 * 18 17 16 20 20 C 1.34815 * 117.00287 * 354.38377 * 19 18 17 21 21 H 1.08003 * 119.99931 * 5.06445 * 20 19 18 22 22 C 1.38702 * 119.99975 * 185.05609 * 20 19 18 23 23 N 1.31517 * 119.99490 * 180.02562 * 22 20 19 24 24 Si 1.86792 * 120.00026 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47355 * 89.99773 * 24 22 20 26 26 H 1.48508 * 109.46968 * 210.00120 * 24 22 20 27 27 H 1.48500 * 109.47421 * 329.99727 * 24 22 20 28 28 C 1.46848 * 111.00143 * 190.25724 * 4 3 2 29 29 H 4.40889 * 5.52063 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47432 * 102.72866 * 3 2 1 31 31 H 1.09000 * 109.47329 * 342.73029 * 3 2 1 32 32 H 1.08998 * 109.46507 * 305.85951 * 5 4 3 33 33 H 1.09004 * 109.45890 * 65.83896 * 5 4 3 34 34 H 1.09007 * 109.50642 * 60.76048 * 6 5 4 35 35 H 1.08997 * 109.50536 * 180.87674 * 6 5 4 36 36 H 1.09006 * 109.53102 * 297.76329 * 7 6 5 37 37 H 1.09003 * 109.57615 * 177.60317 * 7 6 5 38 38 H 0.96996 * 119.99895 * 94.80168 * 10 8 7 39 39 H 1.07994 * 120.04012 * 359.95386 * 14 13 11 40 40 H 1.07996 * 119.83374 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.79779 * 180.02562 * 16 15 14 42 42 H 1.07996 * 119.96483 * 180.02562 * 17 16 15 43 43 H 0.97004 * 119.99786 * 179.97438 * 23 22 20 44 44 H 1.09000 * 109.46218 * 294.17651 * 28 4 3 45 45 H 1.08998 * 109.46124 * 54.14022 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1352 1.0182 0.9398 5 6 2.7860 0.6687 2.3226 6 6 3.1807 1.8162 3.2551 7 6 4.6864 2.0681 3.1375 8 6 5.0307 2.3824 1.6791 9 1 4.5167 3.2932 1.3719 10 7 6.4779 2.5685 1.5473 11 6 7.0279 3.7732 1.7973 12 8 6.3230 4.7058 2.1318 13 6 8.4853 3.9604 1.6651 14 6 9.2990 2.8920 1.2816 15 6 10.6598 3.0735 1.1594 16 6 11.2261 4.3122 1.4146 17 6 10.4346 5.3772 1.7944 18 6 9.0614 5.2142 1.9180 19 8 8.2819 6.2601 2.2853 20 6 8.9114 7.4015 2.6292 21 1 9.9837 7.4790 2.5262 22 6 8.1819 8.4765 3.1152 23 7 8.7960 9.5901 3.4503 24 14 6.3274 8.3423 3.2938 25 1 5.9964 7.8256 4.6461 26 1 5.7144 9.6827 3.1123 27 1 5.7969 7.4121 2.2650 28 6 4.5824 1.2187 0.7920 29 1 -1.0501 -0.0002 -0.0004 30 1 3.0093 0.2273 -1.0024 31 1 3.0098 -0.9805 0.3051 32 1 1.7121 0.4961 2.3935 33 1 3.3193 -0.2361 2.6142 34 1 2.6375 2.7181 2.9726 35 1 2.9356 1.5502 4.2833 36 1 5.2307 1.1794 3.4569 37 1 4.9658 2.9124 3.7678 38 1 7.0402 1.8246 1.2802 39 1 8.8624 1.9247 1.0815 40 1 11.2878 2.2463 0.8632 41 1 12.2934 4.4450 1.3158 42 1 10.8834 6.3396 1.9911 43 1 8.2859 10.3421 3.7898 44 1 5.1071 0.3112 1.0907 45 1 4.8132 1.4455 -0.2488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923584845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:49 Heat of formation + Delta-G solvation = 28.753745 kcal Electronic energy + Delta-G solvation = -27513.070942 eV Core-core repulsion = 23691.057505 eV Total energy + Delta-G solvation = -3822.013437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.09444 -39.29773 -38.00039 -36.52544 -35.18221 -33.47176 -32.44788 -32.21927 -30.98864 -29.23046 -29.11086 -27.27001 -25.32376 -23.86705 -23.29730 -22.49490 -21.23826 -20.15812 -19.93253 -18.48760 -17.90317 -17.76470 -16.50331 -16.39913 -15.57651 -15.36603 -14.98213 -14.72021 -14.60495 -14.30050 -14.23278 -14.03189 -13.83700 -13.67295 -13.41965 -13.18091 -12.91739 -12.80615 -12.44855 -12.35083 -12.16484 -11.49032 -11.43028 -11.25923 -11.09624 -10.95791 -10.85071 -10.75634 -10.70038 -10.54942 -10.41920 -10.03715 -9.61134 -9.04680 -8.88659 -8.76582 -8.66746 -8.38549 -7.48139 -6.46780 -4.11843 1.57301 2.18367 2.38279 2.58049 3.32584 3.35614 3.39246 3.57201 3.68083 3.92850 4.10396 4.36642 4.49945 4.59265 4.73555 4.74911 4.84266 4.92702 5.05241 5.09603 5.12671 5.19387 5.29718 5.32650 5.36842 5.48917 5.54122 5.63674 5.66754 5.68998 5.83544 5.89509 6.01712 6.03662 6.24651 6.29330 6.37567 6.54783 6.62557 6.68994 6.81722 6.88441 7.00933 7.14468 7.35298 7.47759 7.67737 7.94428 7.95927 8.86414 8.90414 9.51940 10.58276 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.003355 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.811322 B = 8344.064324 C =10005.806505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.179 4.179 3 C 0.164 3.836 4 N -0.532 5.532 5 C 0.055 3.945 6 C -0.114 4.114 7 C -0.133 4.133 8 C 0.153 3.847 9 H 0.097 0.903 10 N -0.738 5.738 11 C 0.563 3.437 12 O -0.515 6.515 13 C -0.226 4.226 14 C -0.041 4.041 15 C -0.222 4.222 16 C -0.051 4.051 17 C -0.227 4.227 18 C 0.201 3.799 19 O -0.165 6.165 20 C -0.396 4.396 21 H 0.108 0.892 22 C 0.072 3.928 23 N -0.870 5.870 24 Si 0.900 3.100 25 H -0.274 1.274 26 H -0.287 1.287 27 H -0.238 1.238 28 C 0.053 3.947 29 H 0.217 0.783 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.392 0.608 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.138 0.862 43 H 0.282 0.718 44 H 0.040 0.960 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.351 -21.220 -5.058 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.179 4.179 3 C 0.037 3.963 4 N -0.257 5.257 5 C -0.072 4.072 6 C -0.153 4.153 7 C -0.172 4.172 8 C 0.048 3.952 9 H 0.115 0.885 10 N -0.392 5.392 11 C 0.353 3.647 12 O -0.390 6.390 13 C -0.231 4.231 14 C -0.059 4.059 15 C -0.241 4.241 16 C -0.070 4.070 17 C -0.246 4.246 18 C 0.143 3.857 19 O -0.065 6.065 20 C -0.471 4.471 21 H 0.125 0.875 22 C -0.134 4.134 23 N -0.505 5.505 24 Si 0.725 3.275 25 H -0.199 1.199 26 H -0.213 1.213 27 H -0.161 1.161 28 C -0.075 4.075 29 H 0.234 0.766 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.227 0.773 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.156 0.844 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.359 -19.763 -4.810 22.389 hybrid contribution 0.016 -1.012 0.215 1.035 sum -9.343 -20.775 -4.595 23.238 Atomic orbital electron populations 1.24902 0.95897 1.00478 1.00307 1.22790 0.94143 1.00370 1.00647 1.18973 0.85297 0.94094 0.97932 1.61737 1.13804 1.44919 1.05262 1.22180 1.00902 0.96888 0.87277 1.21547 0.96201 0.98939 0.98586 1.22012 0.95676 1.02178 0.97299 1.20731 0.81373 0.98921 0.94199 0.88495 1.45861 1.07354 1.12755 1.73231 1.18171 0.87813 0.81843 0.76857 1.90863 1.62696 1.40008 1.45437 1.18855 0.92438 0.93200 1.18619 1.20751 0.93586 0.96013 0.95592 1.20533 0.94586 0.97673 1.11303 1.20961 0.98835 0.92497 0.94662 1.21289 0.93216 1.00882 1.09222 1.19029 0.89385 0.86642 0.90640 1.83779 1.34096 1.18414 1.70169 1.20926 0.94781 0.88047 1.43385 0.87461 1.24497 1.00878 0.93636 0.94372 1.69640 1.37443 1.03288 1.40158 0.86195 0.82802 0.77549 0.80945 1.19950 1.21266 1.16055 1.22284 0.86847 0.97466 1.00938 0.76617 0.88274 0.92394 0.90545 0.94660 0.90678 0.91136 0.92200 0.90635 0.77338 0.86904 0.87052 0.86860 0.84437 0.90826 0.94150 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 19.25 29.55 0.57 -1.11 16 2 C -0.18 -1.72 12.36 -37.13 -0.46 -2.18 16 3 C 0.16 1.37 5.46 -6.61 -0.04 1.34 16 4 N -0.53 -5.39 4.63 -238.18 -1.10 -6.49 16 5 C 0.06 0.53 5.30 -3.83 -0.02 0.51 16 6 C -0.11 -1.24 6.09 -26.65 -0.16 -1.40 16 7 C -0.13 -1.68 5.58 -26.61 -0.15 -1.82 16 8 C 0.15 2.02 2.62 -67.85 -0.18 1.85 16 9 H 0.10 1.59 7.58 -51.93 -0.39 1.20 16 10 N -0.74 -10.51 5.03 -54.77 -0.28 -10.78 16 11 C 0.56 11.16 7.73 -12.47 -0.10 11.07 16 12 O -0.51 -12.64 14.83 -16.57 -0.25 -12.89 16 13 C -0.23 -4.52 5.89 -104.81 -0.62 -5.13 16 14 C -0.04 -0.63 9.54 -39.20 -0.37 -1.01 16 15 C -0.22 -3.37 10.02 -39.61 -0.40 -3.77 16 16 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 17 C -0.23 -4.76 9.16 -39.44 -0.36 -5.12 16 18 C 0.20 4.72 6.66 -38.59 -0.26 4.46 16 19 O -0.16 -4.52 6.67 -21.04 -0.14 -4.66 16 20 C -0.40 -11.34 9.95 30.90 0.31 -11.03 16 21 H 0.11 3.05 5.44 -52.48 -0.29 2.77 16 22 C 0.07 2.07 5.49 -17.52 -0.10 1.97 16 23 N -0.87 -25.35 13.96 55.48 0.77 -24.57 16 24 Si 0.90 23.33 28.62 -169.99 -4.86 18.47 16 25 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.24 -6.50 7.11 56.52 0.40 -6.10 16 28 C 0.05 0.52 4.93 -3.83 -0.02 0.50 16 29 H 0.22 1.11 7.80 -54.08 -0.42 0.69 16 30 H 0.10 0.72 7.98 -51.93 -0.41 0.31 16 31 H 0.06 0.41 8.12 -51.93 -0.42 -0.02 16 32 H 0.08 0.73 7.12 -51.93 -0.37 0.36 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.39 4.30 6.63 -40.82 -0.27 4.03 16 39 H 0.11 1.29 6.40 -52.49 -0.34 0.95 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.14 3.00 5.64 -52.49 -0.30 2.71 16 43 H 0.28 7.60 8.31 -40.82 -0.34 7.27 16 44 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -33.51 375.11 -9.09 -42.60 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.14 Total: 4.81 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -2.74 Total: -12.15 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.60 Total: -41.85 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.39 Total: -17.54 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.86 Total: 18.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.51 -9.09 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923584845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.352 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds