Wall clock time and date at job start Tue Mar 31 2020 14:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47010 * 2 1 4 4 C 1.52992 * 109.47186 * 239.99983 * 2 1 3 5 5 O 1.45202 * 109.47072 * 119.99455 * 2 1 3 6 6 C 1.34638 * 116.99579 * 59.66941 * 5 2 1 7 7 O 1.21512 * 120.00123 * 4.06479 * 6 5 2 8 8 N 1.34777 * 120.00072 * 184.06908 * 6 5 2 9 9 C 1.47012 * 121.27835 * 2.72666 * 8 6 5 10 10 C 1.50616 * 108.71420 * 223.59625 * 9 8 6 11 11 C 1.30029 * 121.95682 * 349.41540 * 10 9 8 12 12 C 1.50111 * 123.28293 * 0.67552 * 11 10 9 13 13 N 1.37321 * 121.26743 * 182.73887 * 8 6 5 14 14 C 1.46897 * 111.00508 * 352.81402 * 13 8 6 15 15 C 1.53001 * 109.47100 * 292.68112 * 14 13 8 16 16 C 1.52998 * 109.46970 * 173.64439 * 15 14 13 17 17 S 1.81000 * 109.46893 * 184.91202 * 16 15 14 18 18 C 1.76205 * 100.00011 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99674 * 0.02562 * 18 17 16 20 20 C 1.38794 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.31635 * 120.00491 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 119.99746 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46793 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46620 * 120.00208 * 22 20 18 25 25 H 1.48503 * 109.47046 * 240.00157 * 22 20 18 26 26 H 1.09002 * 109.47259 * 300.00149 * 1 2 3 27 27 H 1.08999 * 109.46796 * 60.00036 * 1 2 3 28 28 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46962 * 184.86814 * 3 2 1 30 30 H 1.09005 * 109.46824 * 304.86403 * 3 2 1 31 31 H 1.09004 * 109.47186 * 64.86494 * 3 2 1 32 32 H 1.09005 * 109.47225 * 299.99939 * 4 2 1 33 33 H 1.08997 * 109.47746 * 60.00045 * 4 2 1 34 34 H 1.09006 * 109.47208 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.59391 * 103.82910 * 9 8 6 36 36 H 1.09001 * 109.60362 * 343.36944 * 9 8 6 37 37 H 1.07997 * 119.02242 * 169.68857 * 10 9 8 38 38 H 1.08006 * 118.35648 * 180.70198 * 11 10 9 39 39 H 1.09000 * 109.25908 * 101.77989 * 12 11 10 40 40 H 1.09000 * 109.26413 * 221.22603 * 12 11 10 41 41 H 1.09000 * 109.46838 * 52.67644 * 14 13 8 42 42 H 1.08998 * 109.47463 * 172.67878 * 14 13 8 43 43 H 1.08998 * 109.46753 * 293.64091 * 15 14 13 44 44 H 1.08998 * 109.46925 * 53.64319 * 15 14 13 45 45 H 1.08996 * 109.47276 * 304.90948 * 16 15 14 46 46 H 1.09004 * 109.47601 * 64.91411 * 16 15 14 47 47 H 0.96994 * 119.99881 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6466 -1.9702 1.3419 7 8 1.0028 -2.5278 0.4752 8 7 1.9926 -2.6389 2.4598 9 6 2.7195 -1.9754 3.5519 10 6 3.8136 -2.8928 4.0315 11 6 3.8867 -4.1342 3.6516 12 6 2.9111 -4.7632 2.6998 13 7 1.6799 -3.9661 2.6220 14 6 0.8140 -4.4398 1.5340 15 6 -0.5517 -3.7576 1.6353 16 6 -1.3985 -4.1280 0.4161 17 16 -2.9568 -3.2084 0.4620 18 6 -3.7105 -3.8096 -1.0129 19 1 -3.1944 -4.5329 -1.6268 20 6 -4.9677 -3.3544 -1.3852 21 7 -5.5969 -2.4731 -0.6366 22 14 -5.7669 -3.9923 -2.9485 23 1 -4.8604 -4.9681 -3.6052 24 1 -7.0505 -4.6588 -2.6116 25 1 -6.0255 -2.8576 -3.8709 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1265 1.4438 -0.0872 30 1 1.6072 1.9809 -0.8433 31 1 1.7496 1.9306 0.9304 32 1 1.6767 -1.7489 -1.2492 33 1 1.6768 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2489 35 1 2.0336 -1.7643 4.3723 36 1 3.1557 -1.0449 3.1886 37 1 4.5570 -2.5093 4.7146 38 1 4.6892 -4.7433 4.0407 39 1 3.3631 -4.8243 1.7098 40 1 2.6678 -5.7678 3.0459 41 1 1.2708 -4.1976 0.5744 42 1 0.6876 -5.5195 1.6140 43 1 -1.0568 -4.0888 2.5426 44 1 -0.4162 -2.6766 1.6688 45 1 -0.8546 -3.8759 -0.4942 46 1 -1.6074 -5.1977 0.4301 47 1 -6.4753 -2.1548 -0.8970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931154378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:58 Heat of formation + Delta-G solvation = 9.956375 kcal Electronic energy + Delta-G solvation = -27757.161834 eV Core-core repulsion = 24069.777234 eV Total energy + Delta-G solvation = -3687.384601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44691 -39.24516 -36.87415 -34.84151 -33.86880 -32.80942 -32.33230 -31.89200 -27.36396 -27.16235 -27.03980 -25.82423 -25.34455 -24.49264 -22.24329 -20.94408 -19.81643 -18.51731 -17.75983 -17.22240 -16.83835 -16.18030 -16.13564 -15.60124 -15.04570 -14.71524 -14.64765 -14.39127 -14.10443 -13.91112 -13.56912 -13.47894 -13.38166 -12.87404 -12.53486 -12.35102 -12.14276 -12.02409 -11.93258 -11.75731 -11.60577 -11.44020 -11.29681 -11.17771 -11.02630 -10.95758 -10.66493 -10.53249 -10.44877 -10.39765 -9.63951 -9.40660 -9.23237 -9.02546 -8.94547 -8.11224 -7.83816 -6.35734 -6.12185 -3.79187 1.89785 1.93588 2.85078 3.26551 3.29203 3.35805 3.48650 3.78238 4.20438 4.35534 4.54860 4.65347 4.81939 4.85908 5.02948 5.11583 5.21096 5.23500 5.30971 5.47022 5.47590 5.51078 5.52304 5.56225 5.62988 5.66403 5.71643 5.78638 5.89402 6.01149 6.03502 6.09682 6.13695 6.19850 6.25350 6.37500 6.43916 6.47878 6.60845 6.74487 6.80351 6.87361 7.08345 7.26325 7.57826 7.71461 8.48147 8.56131 9.34306 10.96038 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.003867 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.263201 B = 7238.437972 C = 8580.293260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.138 3.862 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.369 6.369 6 C 0.635 3.365 7 O -0.533 6.533 8 N -0.454 5.454 9 C 0.161 3.839 10 C -0.169 4.169 11 C -0.147 4.147 12 C 0.041 3.959 13 N -0.263 5.263 14 C 0.030 3.970 15 C -0.071 4.071 16 C -0.097 4.097 17 S -0.136 6.136 18 C -0.509 4.509 19 H 0.070 0.930 20 C 0.070 3.930 21 N -0.871 5.871 22 Si 0.915 3.085 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.049 0.951 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.105 3.208 7.116 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.102 3.898 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.283 6.283 6 C 0.390 3.610 7 O -0.421 6.421 8 N -0.282 5.282 9 C 0.040 3.960 10 C -0.188 4.188 11 C -0.165 4.165 12 C -0.087 4.087 13 N -0.079 5.079 14 C -0.097 4.097 15 C -0.109 4.109 16 C -0.247 4.247 17 S 0.093 5.907 18 C -0.658 4.658 19 H 0.088 0.912 20 C -0.138 4.138 21 N -0.507 5.507 22 Si 0.741 3.259 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.084 3.956 7.979 22.888 hybrid contribution 0.381 -1.420 -2.596 2.984 sum 21.465 2.536 5.383 22.275 Atomic orbital electron populations 1.22529 0.92636 1.06465 1.02528 1.22095 0.95074 0.90961 0.81718 1.21856 1.01540 0.92998 1.03190 1.22525 1.00623 1.04063 0.96718 1.86260 1.70720 1.24276 1.47076 1.18472 0.79284 0.81208 0.82059 1.91051 1.41230 1.67011 1.42797 1.46444 1.60881 1.05473 1.15406 1.20616 0.91880 0.94474 0.89062 1.22579 0.98971 0.95767 1.01450 1.22125 0.99253 0.96293 0.98876 1.21717 0.90480 0.98248 0.98230 1.65342 1.11584 0.87950 1.43036 1.23283 0.94405 0.98369 0.93682 1.21272 0.91637 1.01335 0.96680 1.23097 1.00121 1.01470 0.99991 1.84529 1.12963 1.58313 1.34921 1.22740 1.04899 1.29231 1.08890 0.91165 1.24983 0.96242 0.94988 0.97601 1.70045 1.14054 1.29242 1.37387 0.86172 0.79045 0.78673 0.81982 1.19681 1.20678 1.20689 0.92245 0.91140 0.88229 0.92023 0.90196 0.91496 0.89034 0.91241 0.92913 0.89398 0.88007 0.85842 0.86674 0.92926 0.87909 0.88607 0.91322 0.93164 0.90617 0.91651 0.93235 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 8.37 37.16 0.31 -2.54 16 2 C 0.14 1.79 1.13 -90.62 -0.10 1.69 16 3 C -0.14 -1.36 8.85 37.16 0.33 -1.03 16 4 C -0.18 -2.34 8.38 37.15 0.31 -2.03 16 5 O -0.37 -5.08 8.65 -40.32 -0.35 -5.43 16 6 C 0.63 9.61 6.46 54.06 0.35 9.96 16 7 O -0.53 -9.18 4.81 -19.28 -0.09 -9.27 16 8 N -0.45 -6.09 3.03 -66.15 -0.20 -6.29 16 9 C 0.16 1.62 6.79 -4.96 -0.03 1.59 16 10 C -0.17 -1.42 10.08 -35.79 -0.36 -1.78 16 11 C -0.15 -1.29 9.96 -36.04 -0.36 -1.65 16 12 C 0.04 0.44 5.90 -5.28 -0.03 0.41 16 13 N -0.26 -3.57 5.13 -115.40 -0.59 -4.16 16 14 C 0.03 0.47 4.44 -3.82 -0.02 0.45 16 15 C -0.07 -1.34 4.40 -26.73 -0.12 -1.46 16 16 C -0.10 -2.17 5.50 37.16 0.20 -1.97 16 17 S -0.14 -3.74 21.44 -107.50 -2.30 -6.04 16 18 C -0.51 -15.19 9.50 30.94 0.29 -14.90 16 19 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 20 C 0.07 2.06 5.50 -17.43 -0.10 1.96 16 21 N -0.87 -26.72 13.22 55.49 0.73 -25.99 16 22 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 1.91 5.86 -51.93 -0.30 1.61 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.42 5.77 -51.93 -0.30 1.12 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.92 7.12 -51.93 -0.37 0.55 16 37 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.05 0.58 8.07 -51.93 -0.42 0.16 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.10 1.61 5.60 -54.17 -0.30 1.31 16 42 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.08 1.54 5.14 -51.93 -0.27 1.27 16 45 H 0.06 1.50 7.57 -51.92 -0.39 1.11 16 46 H 0.05 1.09 8.14 -51.91 -0.42 0.67 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -33.40 377.42 -9.28 -42.67 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.82 Total: 2.91 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 0.68 Total: -11.30 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.06 Total: -36.44 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.44 Total: -14.70 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -2.30 Total: -6.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.40 -9.28 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931154378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.631 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds