Wall clock time and date at job start Tue Mar 31 2020 14:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47010 * 2 1 4 4 C 1.52992 * 109.47186 * 239.99983 * 2 1 3 5 5 O 1.45202 * 109.47072 * 119.99455 * 2 1 3 6 6 C 1.34638 * 116.99579 * 59.66941 * 5 2 1 7 7 O 1.21512 * 120.00123 * 4.06479 * 6 5 2 8 8 N 1.34777 * 120.00072 * 184.06908 * 6 5 2 9 9 C 1.47012 * 121.27835 * 2.72666 * 8 6 5 10 10 C 1.50616 * 108.71420 * 223.59625 * 9 8 6 11 11 C 1.30029 * 121.95682 * 349.41540 * 10 9 8 12 12 C 1.50111 * 123.28293 * 0.67552 * 11 10 9 13 13 N 1.37321 * 121.26743 * 182.73887 * 8 6 5 14 14 C 1.46897 * 111.00508 * 352.81402 * 13 8 6 15 15 C 1.53001 * 109.47100 * 292.68112 * 14 13 8 16 16 C 1.52998 * 109.46970 * 173.64439 * 15 14 13 17 17 S 1.81000 * 109.46893 * 184.91202 * 16 15 14 18 18 C 1.76205 * 100.00011 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99674 * 0.02562 * 18 17 16 20 20 C 1.38794 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.31635 * 120.00491 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 119.99746 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46793 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46620 * 120.00208 * 22 20 18 25 25 H 1.48503 * 109.47046 * 240.00157 * 22 20 18 26 26 H 1.09002 * 109.47259 * 300.00149 * 1 2 3 27 27 H 1.08999 * 109.46796 * 60.00036 * 1 2 3 28 28 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46962 * 184.86814 * 3 2 1 30 30 H 1.09005 * 109.46824 * 304.86403 * 3 2 1 31 31 H 1.09004 * 109.47186 * 64.86494 * 3 2 1 32 32 H 1.09005 * 109.47225 * 299.99939 * 4 2 1 33 33 H 1.08997 * 109.47746 * 60.00045 * 4 2 1 34 34 H 1.09006 * 109.47208 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.59391 * 103.82910 * 9 8 6 36 36 H 1.09001 * 109.60362 * 343.36944 * 9 8 6 37 37 H 1.07997 * 119.02242 * 169.68857 * 10 9 8 38 38 H 1.08006 * 118.35648 * 180.70198 * 11 10 9 39 39 H 1.09000 * 109.25908 * 101.77989 * 12 11 10 40 40 H 1.09000 * 109.26413 * 221.22603 * 12 11 10 41 41 H 1.09000 * 109.46838 * 52.67644 * 14 13 8 42 42 H 1.08998 * 109.47463 * 172.67878 * 14 13 8 43 43 H 1.08998 * 109.46753 * 293.64091 * 15 14 13 44 44 H 1.08998 * 109.46925 * 53.64319 * 15 14 13 45 45 H 1.08996 * 109.47276 * 304.90948 * 16 15 14 46 46 H 1.09004 * 109.47601 * 64.91411 * 16 15 14 47 47 H 0.96994 * 119.99881 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6466 -1.9702 1.3419 7 8 1.0028 -2.5278 0.4752 8 7 1.9926 -2.6389 2.4598 9 6 2.7195 -1.9754 3.5519 10 6 3.8136 -2.8928 4.0315 11 6 3.8867 -4.1342 3.6516 12 6 2.9111 -4.7632 2.6998 13 7 1.6799 -3.9661 2.6220 14 6 0.8140 -4.4398 1.5340 15 6 -0.5517 -3.7576 1.6353 16 6 -1.3985 -4.1280 0.4161 17 16 -2.9568 -3.2084 0.4620 18 6 -3.7105 -3.8096 -1.0129 19 1 -3.1944 -4.5329 -1.6268 20 6 -4.9677 -3.3544 -1.3852 21 7 -5.5969 -2.4731 -0.6366 22 14 -5.7669 -3.9923 -2.9485 23 1 -4.8604 -4.9681 -3.6052 24 1 -7.0505 -4.6588 -2.6116 25 1 -6.0255 -2.8576 -3.8709 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1265 1.4438 -0.0872 30 1 1.6072 1.9809 -0.8433 31 1 1.7496 1.9306 0.9304 32 1 1.6767 -1.7489 -1.2492 33 1 1.6768 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2489 35 1 2.0336 -1.7643 4.3723 36 1 3.1557 -1.0449 3.1886 37 1 4.5570 -2.5093 4.7146 38 1 4.6892 -4.7433 4.0407 39 1 3.3631 -4.8243 1.7098 40 1 2.6678 -5.7678 3.0459 41 1 1.2708 -4.1976 0.5744 42 1 0.6876 -5.5195 1.6140 43 1 -1.0568 -4.0888 2.5426 44 1 -0.4162 -2.6766 1.6688 45 1 -0.8546 -3.8759 -0.4942 46 1 -1.6074 -5.1977 0.4301 47 1 -6.4753 -2.1548 -0.8970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931154378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:57 Heat of formation + Delta-G solvation = -10.457103 kcal Electronic energy + Delta-G solvation = -27758.047029 eV Core-core repulsion = 24069.777234 eV Total energy + Delta-G solvation = -3688.269796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.54731 -40.26949 -37.93513 -36.00413 -34.90619 -34.59796 -33.82283 -33.15403 -28.35665 -28.32397 -28.20763 -27.68553 -26.68976 -25.55490 -23.50533 -22.31529 -20.88027 -19.64750 -19.44991 -18.58543 -17.89107 -17.30038 -17.20952 -16.89889 -16.49790 -16.32083 -16.03240 -15.66929 -15.18060 -15.10525 -14.79072 -14.67824 -14.47041 -14.38495 -13.79185 -13.53967 -13.31364 -13.20506 -13.13047 -12.95896 -12.91209 -12.87020 -12.73164 -12.59514 -12.48196 -12.47183 -12.21297 -12.07694 -11.67105 -11.47512 -11.35659 -11.16349 -10.96193 -10.28647 -10.19031 -9.93972 -8.93129 -8.61991 -8.36370 -6.10958 0.88762 1.27728 1.29828 1.36214 1.47413 1.71359 1.78274 2.28971 2.49429 2.96997 3.17428 3.37693 3.80003 3.83201 3.86465 3.93775 3.98694 4.09584 4.20333 4.39292 4.43657 4.45436 4.48672 4.55624 4.61227 4.64182 4.71339 4.71742 4.79208 4.82559 4.85669 4.87149 4.93906 5.00603 5.12780 5.21210 5.26932 5.32708 5.35468 5.39500 5.43620 5.48130 5.73043 5.88185 6.10984 6.18894 6.49477 7.05319 7.44615 8.73391 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.003867 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.263201 B = 7238.437972 C = 8580.293260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.136 3.864 3 C -0.132 4.132 4 C -0.177 4.177 5 O -0.364 6.364 6 C 0.626 3.374 7 O -0.560 6.560 8 N -0.456 5.456 9 C 0.151 3.849 10 C -0.165 4.165 11 C -0.156 4.156 12 C 0.040 3.960 13 N -0.272 5.272 14 C 0.045 3.955 15 C -0.056 4.056 16 C -0.068 4.068 17 S -0.192 6.192 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.017 3.983 21 N -0.907 5.907 22 Si 0.993 3.007 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.270 1.270 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.156 0.844 38 H 0.143 0.857 39 H 0.047 0.953 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.077 3.127 7.238 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.100 3.900 3 C -0.189 4.189 4 C -0.234 4.234 5 O -0.278 6.278 6 C 0.381 3.619 7 O -0.450 6.450 8 N -0.284 5.284 9 C 0.031 3.969 10 C -0.184 4.184 11 C -0.174 4.174 12 C -0.088 4.088 13 N -0.088 5.088 14 C -0.083 4.083 15 C -0.094 4.094 16 C -0.217 4.217 17 S 0.037 5.963 18 C -0.683 4.683 19 H 0.084 0.916 20 C -0.188 4.188 21 N -0.543 5.543 22 Si 0.815 3.185 23 H -0.190 1.190 24 H -0.194 1.194 25 H -0.195 1.195 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.173 0.827 38 H 0.161 0.839 39 H 0.065 0.935 40 H 0.137 0.863 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.085 3.882 8.137 24.782 hybrid contribution -0.196 -1.370 -2.567 2.916 sum 22.889 2.512 5.570 23.690 Atomic orbital electron populations 1.22448 0.95047 1.03688 1.02585 1.22241 0.93231 0.92899 0.81642 1.21857 1.02605 0.90334 1.04091 1.22451 1.01491 1.02294 0.97155 1.86269 1.70464 1.23660 1.47399 1.18730 0.79265 0.81586 0.82329 1.91048 1.42468 1.67607 1.43908 1.46697 1.60640 1.05508 1.15553 1.20919 0.92442 0.95309 0.88218 1.22773 0.98730 0.95263 1.01601 1.22294 0.99563 0.96853 0.98737 1.21834 0.89442 0.98704 0.98820 1.65191 1.13432 0.88554 1.41604 1.22926 0.92725 0.98640 0.94052 1.21113 0.93116 1.00787 0.94418 1.22938 0.97248 1.00361 1.01186 1.84522 1.16468 1.60299 1.34997 1.23027 1.05851 1.29786 1.09638 0.91591 1.26031 0.96529 0.94863 1.01360 1.70169 1.14616 1.30196 1.39355 0.84996 0.78040 0.78374 0.77121 1.18960 1.19421 1.19491 0.92586 0.90654 0.92321 0.90310 0.88820 0.91032 0.92100 0.90237 0.91321 0.89104 0.86962 0.82690 0.83894 0.93465 0.86326 0.89843 0.89866 0.93910 0.92043 0.92778 0.93037 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.84 8.37 71.98 0.60 -5.24 16 2 C 0.14 3.52 1.13 -10.79 -0.01 3.51 16 3 C -0.13 -2.34 8.85 71.98 0.64 -1.70 16 4 C -0.18 -4.54 8.38 71.98 0.60 -3.94 16 5 O -0.36 -9.97 8.65 -55.48 -0.48 -10.45 16 6 C 0.63 19.32 6.46 129.79 0.84 20.16 16 7 O -0.56 -20.26 4.81 19.80 0.10 -20.17 16 8 N -0.46 -12.04 3.03 -593.59 -1.80 -13.84 16 9 C 0.15 2.80 6.79 85.51 0.58 3.38 16 10 C -0.17 -2.28 10.08 26.62 0.27 -2.01 16 11 C -0.16 -2.30 9.96 26.47 0.26 -2.03 16 12 C 0.04 0.77 5.90 85.38 0.50 1.27 16 13 N -0.27 -7.22 5.13 -519.01 -2.66 -9.88 16 14 C 0.04 1.41 4.44 86.30 0.38 1.79 16 15 C -0.06 -2.19 4.40 30.59 0.13 -2.06 16 16 C -0.07 -3.16 5.50 71.98 0.40 -2.76 16 17 S -0.19 -11.04 21.44 -56.49 -1.21 -12.25 16 18 C -0.54 -32.85 9.50 67.95 0.65 -32.21 16 19 H 0.07 3.97 7.80 -2.91 -0.02 3.94 16 20 C 0.02 1.00 5.50 84.86 0.47 1.47 16 21 N -0.91 -56.64 13.22 21.65 0.29 -56.36 16 22 Si 0.99 45.87 29.55 68.60 2.03 47.90 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 28 H 0.06 2.42 5.86 -2.39 -0.01 2.40 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.06 1.97 5.77 -2.38 -0.01 1.96 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.82 7.12 -2.39 -0.02 1.80 16 37 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.05 0.98 8.07 -2.39 -0.02 0.96 16 40 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.08 2.89 5.60 -37.95 -0.21 2.68 16 42 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.06 2.63 5.14 -2.39 -0.01 2.62 16 45 H 0.05 2.62 7.57 -2.40 -0.02 2.60 16 46 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -75.09 377.42 3.31 -71.79 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.74 Total: 23.62 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 6.31 Total: -20.37 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -4.18 Total: -80.07 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.38 Total: -30.62 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: -11.04 SS G_CDS: -1.21 Total: -12.25 kcal Total: -75.09 3.31 -71.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931154378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.330 kcal (2) G-P(sol) polarization free energy of solvation -75.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds