Wall clock time and date at job start Tue Mar 31 2020 16:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47219 * 2 1 4 4 N 1.46503 * 109.47238 * 119.99936 * 2 1 3 5 5 C 1.46505 * 119.99620 * 300.00321 * 4 2 1 6 6 C 1.50706 * 109.47028 * 269.99705 * 5 4 2 7 7 H 1.08004 * 119.99661 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00322 * 179.72744 * 6 5 4 9 9 N 1.31522 * 119.99689 * 0.27614 * 8 6 5 10 10 Si 1.86797 * 120.00228 * 180.27481 * 8 6 5 11 11 H 1.48494 * 109.47353 * 60.00025 * 10 8 6 12 12 H 1.48505 * 109.46816 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47054 * 299.99608 * 10 8 6 14 14 C 1.34771 * 120.00436 * 120.00068 * 4 2 1 15 15 O 1.21277 * 120.00296 * 180.02562 * 14 4 2 16 16 C 1.50708 * 119.99950 * 0.02562 * 14 4 2 17 17 H 1.08999 * 115.55941 * 78.72669 * 16 14 4 18 18 C 1.53134 * 117.51222 * 292.97950 * 16 14 4 19 19 C 1.52335 * 59.82684 * 252.56079 * 18 16 14 20 20 C 1.50546 * 121.92145 * 111.22296 * 19 18 16 21 21 C 1.37676 * 133.32218 * 323.75038 * 20 19 18 22 22 C 1.38373 * 119.98766 * 179.97438 * 21 20 19 23 23 C 1.38306 * 119.83374 * 0.02562 * 22 21 20 24 24 C 1.37937 * 120.34783 * 359.97438 * 23 22 21 25 25 C 1.39101 * 105.96981 * 143.72847 * 20 19 18 26 26 N 1.39612 * 110.25131 * 359.97438 * 25 20 19 27 27 C 1.34600 * 112.21968 * 0.02562 * 26 25 20 28 28 O 1.21287 * 126.61777 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.47388 * 300.00307 * 1 2 3 30 30 H 1.09002 * 109.46717 * 60.00344 * 1 2 3 31 31 H 1.08994 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47388 * 239.99693 * 2 1 3 33 33 H 1.09007 * 109.46913 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46994 * 299.99486 * 3 2 1 35 35 H 1.08999 * 109.46946 * 60.00055 * 3 2 1 36 36 H 1.08998 * 109.47147 * 149.99905 * 5 4 2 37 37 H 1.08996 * 109.47376 * 29.99805 * 5 4 2 38 38 H 0.96998 * 119.99858 * 180.02562 * 9 8 6 39 39 H 1.09002 * 117.52152 * 0.02562 * 18 16 14 40 40 H 1.09006 * 117.50864 * 145.12066 * 18 16 14 41 41 H 1.07997 * 120.00701 * 359.96791 * 21 20 19 42 42 H 1.07995 * 120.08421 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.82650 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.90686 * 180.02562 * 24 23 22 45 45 H 0.97001 * 123.88802 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.7030 0.8020 2.9831 7 1 3.5431 1.0358 2.3458 8 6 2.5783 1.4148 4.2118 9 7 1.5556 1.1296 4.9880 10 14 3.8618 2.6501 4.7740 11 1 3.9150 3.7809 3.8129 12 1 3.4998 3.1619 6.1202 13 1 5.1905 1.9900 4.8357 14 6 2.7932 -1.7864 1.0726 15 8 3.1970 -2.3583 2.0629 16 6 3.1578 -2.3010 -0.2961 17 1 3.9582 -1.7622 -0.8033 18 6 2.0300 -2.8712 -1.1610 19 6 3.0588 -3.8026 -0.5328 20 6 2.6965 -4.7600 0.5711 21 6 1.8353 -4.6841 1.6425 22 6 1.7130 -5.7562 2.5088 23 6 2.4578 -6.9019 2.2952 24 6 3.3217 -6.9817 1.2229 25 6 3.4505 -5.9070 0.3456 26 7 4.2430 -5.7484 -0.7928 27 6 4.0734 -4.5429 -1.3671 28 8 4.6289 -4.1318 -2.3638 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6237 -1.0225 3.2292 37 1 0.6903 0.2974 2.4844 38 1 1.4676 1.5611 5.8523 39 1 1.0245 -2.8736 -0.7401 40 1 2.0892 -2.7081 -2.2372 41 1 1.2554 -3.7880 1.8070 42 1 1.0382 -5.6982 3.3500 43 1 2.3619 -7.7387 2.9712 44 1 3.8996 -7.8799 1.0626 45 1 4.8463 -6.4285 -1.1309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931325322.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:15 Heat of formation + Delta-G solvation = 0.210778 kcal Electronic energy + Delta-G solvation = -28862.951112 eV Core-core repulsion = 25039.699959 eV Total energy + Delta-G solvation = -3823.251153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79037 -39.32144 -38.41603 -36.31559 -35.81123 -35.50806 -32.80279 -30.93054 -30.70459 -29.22080 -27.72833 -26.74965 -25.89589 -24.12067 -22.57936 -22.49882 -21.56080 -21.02849 -20.01642 -18.28430 -17.56350 -17.19566 -16.46972 -16.41006 -15.76736 -15.49054 -15.34161 -15.13855 -14.43379 -14.22402 -14.01975 -13.71706 -13.50608 -13.48761 -13.06872 -12.92906 -12.53055 -12.42606 -12.27026 -11.94463 -11.64885 -11.56273 -11.37530 -11.11284 -11.06831 -10.91005 -10.88171 -10.82389 -10.71935 -10.48992 -10.34813 -10.09312 -10.00630 -9.56518 -8.99538 -8.63074 -8.42109 -7.99916 -7.66837 -6.04282 -4.07258 1.11414 1.41347 2.28435 2.84401 3.24381 3.31878 3.36397 3.40530 3.63173 3.76261 3.96402 4.14176 4.29895 4.42890 4.46725 4.80818 4.92418 5.08553 5.13239 5.30273 5.30691 5.31504 5.41661 5.50095 5.55829 5.60251 5.60752 5.70972 5.87339 6.01793 6.02436 6.11952 6.15569 6.27853 6.37280 6.43341 6.57350 6.59670 6.63498 6.72092 6.96801 7.04779 7.08709 7.42899 7.54060 7.88080 7.92508 8.24049 8.39493 8.89095 9.05648 9.56964 11.03767 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.004208 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.450195 B = 6653.169576 C = 7493.933678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 C -0.157 4.157 4 N -0.585 5.585 5 C 0.248 3.752 6 C -0.519 4.519 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.531 3.469 15 O -0.522 6.522 16 C -0.122 4.122 17 H 0.138 0.862 18 C -0.111 4.111 19 C -0.126 4.126 20 C -0.088 4.088 21 C -0.033 4.033 22 C -0.136 4.136 23 C -0.089 4.089 24 C -0.144 4.144 25 C 0.136 3.864 26 N -0.656 5.656 27 C 0.566 3.434 28 O -0.504 6.504 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.263 0.737 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -12.519 -11.635 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 C -0.215 4.215 4 N -0.317 5.317 5 C 0.129 3.871 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.315 3.685 15 O -0.398 6.398 16 C -0.143 4.143 17 H 0.156 0.844 18 C -0.149 4.149 19 C -0.130 4.130 20 C -0.090 4.090 21 C -0.051 4.051 22 C -0.155 4.155 23 C -0.107 4.107 24 C -0.165 4.165 25 C 0.040 3.960 26 N -0.299 5.299 27 C 0.354 3.646 28 O -0.378 6.378 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.167 -12.421 -11.481 17.052 hybrid contribution 1.256 0.434 0.289 1.359 sum -0.911 -11.988 -11.191 16.425 Atomic orbital electron populations 1.22160 0.95566 1.01681 1.02529 1.21055 0.94062 0.94170 0.88099 1.22142 1.01397 0.95699 1.02293 1.48288 1.48603 1.25937 1.08826 1.19254 0.95927 0.94978 0.76955 1.21391 1.08872 1.23345 1.02219 0.92440 1.24898 0.95684 0.97091 0.96335 1.69915 1.29471 1.43267 1.10823 0.86629 0.82089 0.81364 0.77768 1.20283 1.21266 1.20289 1.19162 0.79731 0.81369 0.88212 1.90726 1.52688 1.57947 1.38435 1.22306 1.02717 0.91277 0.98019 0.84442 1.23088 0.94529 0.97160 1.00087 1.20125 1.02308 0.91936 0.98629 1.18788 1.00106 0.92971 0.97183 1.20295 0.95654 0.97966 0.91200 1.21060 1.01264 0.93252 0.99901 1.20821 0.95373 0.98180 0.96336 1.20221 1.02998 0.97252 0.96070 1.18114 0.93296 0.96000 0.88614 1.43471 1.42524 1.17587 1.26341 1.19320 0.81182 0.81080 0.82995 1.90776 1.51307 1.71282 1.24478 0.91316 0.92201 0.92981 0.90312 0.92766 0.93241 0.90095 0.94039 0.94644 0.92758 0.86680 0.86483 0.85610 0.85341 0.85436 0.85979 0.74912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.17 37.15 0.34 -1.84 16 2 C 0.13 2.01 2.96 -67.93 -0.20 1.81 16 3 C -0.16 -2.52 8.47 37.16 0.31 -2.21 16 4 N -0.58 -11.46 2.39 -167.46 -0.40 -11.86 16 5 C 0.25 6.03 4.60 -5.19 -0.02 6.01 16 6 C -0.52 -13.99 7.83 -34.44 -0.27 -14.26 16 7 H 0.06 1.56 7.63 -52.48 -0.40 1.16 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 10 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 14 C 0.53 10.46 6.15 -10.98 -0.07 10.39 16 15 O -0.52 -12.37 13.90 5.56 0.08 -12.29 16 16 C -0.12 -1.90 4.58 -92.04 -0.42 -2.32 16 17 H 0.14 2.06 8.14 -51.93 -0.42 1.64 16 18 C -0.11 -1.36 8.47 -27.00 -0.23 -1.59 16 19 C -0.13 -1.87 2.41 -157.53 -0.38 -2.25 16 20 C -0.09 -1.33 5.32 -104.58 -0.56 -1.89 16 21 C -0.03 -0.50 8.15 -39.74 -0.32 -0.83 16 22 C -0.14 -1.78 10.07 -39.51 -0.40 -2.18 16 23 C -0.09 -0.99 10.02 -39.67 -0.40 -1.39 16 24 C -0.14 -1.63 10.07 -39.29 -0.40 -2.02 16 25 C 0.14 1.82 7.12 -83.59 -0.59 1.22 16 26 N -0.66 -8.16 5.90 -9.79 -0.06 -8.22 16 27 C 0.57 8.39 8.47 -11.02 -0.09 8.29 16 28 O -0.50 -8.43 18.03 5.55 0.10 -8.33 16 29 H 0.07 1.07 6.66 -51.93 -0.35 0.73 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.03 5.21 -51.93 -0.27 0.76 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.53 6.92 -51.93 -0.36 1.17 16 36 H 0.04 1.15 7.42 -51.93 -0.39 0.77 16 37 H 0.04 0.88 6.43 -51.93 -0.33 0.54 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.13 2.09 6.99 -52.49 -0.37 1.73 16 42 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 45 H 0.41 3.88 8.96 -40.82 -0.37 3.51 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -33.02 369.35 -8.98 -42.00 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.19 Total: 5.06 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -3.79 Total: -3.42 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.28 Total: -45.12 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.18 Total: -20.62 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.02 -8.98 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931325322.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.207 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds