Wall clock time and date at job start Tue Mar 31 2020 16:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47219 * 2 1 4 4 N 1.46503 * 109.47238 * 119.99936 * 2 1 3 5 5 C 1.46505 * 119.99620 * 300.00321 * 4 2 1 6 6 C 1.50706 * 109.47028 * 269.99705 * 5 4 2 7 7 H 1.08004 * 119.99661 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00322 * 179.72744 * 6 5 4 9 9 N 1.31522 * 119.99689 * 0.27614 * 8 6 5 10 10 Si 1.86797 * 120.00228 * 180.27481 * 8 6 5 11 11 H 1.48494 * 109.47353 * 60.00025 * 10 8 6 12 12 H 1.48505 * 109.46816 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47054 * 299.99608 * 10 8 6 14 14 C 1.34771 * 120.00436 * 120.00068 * 4 2 1 15 15 O 1.21277 * 120.00296 * 180.02562 * 14 4 2 16 16 C 1.50708 * 119.99950 * 0.02562 * 14 4 2 17 17 H 1.08999 * 115.55941 * 78.72669 * 16 14 4 18 18 C 1.53134 * 117.51222 * 292.97950 * 16 14 4 19 19 C 1.52335 * 59.82684 * 252.56079 * 18 16 14 20 20 C 1.50546 * 121.92145 * 111.22296 * 19 18 16 21 21 C 1.37676 * 133.32218 * 323.75038 * 20 19 18 22 22 C 1.38373 * 119.98766 * 179.97438 * 21 20 19 23 23 C 1.38306 * 119.83374 * 0.02562 * 22 21 20 24 24 C 1.37937 * 120.34783 * 359.97438 * 23 22 21 25 25 C 1.39101 * 105.96981 * 143.72847 * 20 19 18 26 26 N 1.39612 * 110.25131 * 359.97438 * 25 20 19 27 27 C 1.34600 * 112.21968 * 0.02562 * 26 25 20 28 28 O 1.21287 * 126.61777 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.47388 * 300.00307 * 1 2 3 30 30 H 1.09002 * 109.46717 * 60.00344 * 1 2 3 31 31 H 1.08994 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47388 * 239.99693 * 2 1 3 33 33 H 1.09007 * 109.46913 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46994 * 299.99486 * 3 2 1 35 35 H 1.08999 * 109.46946 * 60.00055 * 3 2 1 36 36 H 1.08998 * 109.47147 * 149.99905 * 5 4 2 37 37 H 1.08996 * 109.47376 * 29.99805 * 5 4 2 38 38 H 0.96998 * 119.99858 * 180.02562 * 9 8 6 39 39 H 1.09002 * 117.52152 * 0.02562 * 18 16 14 40 40 H 1.09006 * 117.50864 * 145.12066 * 18 16 14 41 41 H 1.07997 * 120.00701 * 359.96791 * 21 20 19 42 42 H 1.07995 * 120.08421 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.82650 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.90686 * 180.02562 * 24 23 22 45 45 H 0.97001 * 123.88802 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.7030 0.8020 2.9831 7 1 3.5431 1.0358 2.3458 8 6 2.5783 1.4148 4.2118 9 7 1.5556 1.1296 4.9880 10 14 3.8618 2.6501 4.7740 11 1 3.9150 3.7809 3.8129 12 1 3.4998 3.1619 6.1202 13 1 5.1905 1.9900 4.8357 14 6 2.7932 -1.7864 1.0726 15 8 3.1970 -2.3583 2.0629 16 6 3.1578 -2.3010 -0.2961 17 1 3.9582 -1.7622 -0.8033 18 6 2.0300 -2.8712 -1.1610 19 6 3.0588 -3.8026 -0.5328 20 6 2.6965 -4.7600 0.5711 21 6 1.8353 -4.6841 1.6425 22 6 1.7130 -5.7562 2.5088 23 6 2.4578 -6.9019 2.2952 24 6 3.3217 -6.9817 1.2229 25 6 3.4505 -5.9070 0.3456 26 7 4.2430 -5.7484 -0.7928 27 6 4.0734 -4.5429 -1.3671 28 8 4.6289 -4.1318 -2.3638 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6237 -1.0225 3.2292 37 1 0.6903 0.2974 2.4844 38 1 1.4676 1.5611 5.8523 39 1 1.0245 -2.8736 -0.7401 40 1 2.0892 -2.7081 -2.2372 41 1 1.2554 -3.7880 1.8070 42 1 1.0382 -5.6982 3.3500 43 1 2.3619 -7.7387 2.9712 44 1 3.8996 -7.8799 1.0626 45 1 4.8463 -6.4285 -1.1309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931325322.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:13 Heat of formation + Delta-G solvation = -20.338448 kcal Electronic energy + Delta-G solvation = -28863.842193 eV Core-core repulsion = 25039.699959 eV Total energy + Delta-G solvation = -3824.142234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.88691 -40.78652 -39.49098 -37.66322 -37.19985 -36.59753 -34.85526 -32.39309 -31.80972 -30.25739 -29.56083 -27.97743 -27.13334 -25.65411 -24.14834 -23.59766 -22.62158 -22.35225 -21.17282 -19.60978 -18.70292 -18.58685 -18.35458 -17.68318 -17.07614 -16.82776 -16.57095 -16.46224 -16.15287 -15.37442 -15.27514 -14.99227 -14.82379 -14.75464 -14.31701 -14.08762 -14.01820 -13.79190 -13.57326 -13.31705 -13.17766 -12.98734 -12.81398 -12.69277 -12.56329 -12.28925 -12.18557 -12.11694 -12.05810 -11.87256 -11.78035 -11.58112 -11.47142 -11.22524 -10.58183 -10.53900 -9.71197 -9.35119 -9.02137 -8.17511 -6.28247 0.06180 0.40967 1.19765 1.36298 1.39338 1.46052 1.73960 1.85524 2.25608 2.42416 2.58524 2.89463 2.99299 3.12619 3.22464 3.32694 3.64998 3.84869 3.95564 4.07049 4.18582 4.29637 4.39608 4.42392 4.47222 4.54909 4.58709 4.65624 4.80782 4.88226 4.91891 5.02616 5.06225 5.08964 5.14108 5.17112 5.27918 5.43072 5.48237 5.54851 5.59218 5.62351 5.67571 5.72871 5.92123 6.05715 6.14399 6.76118 6.84321 6.86201 7.33042 7.50672 8.89191 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.004208 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.450195 B = 6653.169576 C = 7493.933678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 C -0.153 4.153 4 N -0.587 5.587 5 C 0.268 3.732 6 C -0.526 4.526 7 H 0.050 0.950 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.954 3.046 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.282 1.282 14 C 0.528 3.472 15 O -0.571 6.571 16 C -0.135 4.135 17 H 0.146 0.854 18 C -0.080 4.080 19 C -0.138 4.138 20 C -0.112 4.112 21 C -0.057 4.057 22 C -0.148 4.148 23 C -0.083 4.083 24 C -0.134 4.134 25 C 0.124 3.876 26 N -0.642 5.642 27 C 0.566 3.434 28 O -0.526 6.526 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.039 0.961 34 H 0.089 0.911 35 H 0.044 0.956 36 H -0.003 1.003 37 H 0.028 0.972 38 H 0.265 0.735 39 H 0.123 0.877 40 H 0.148 0.852 41 H 0.097 0.903 42 H 0.137 0.863 43 H 0.164 0.836 44 H 0.159 0.841 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 -13.669 -13.704 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 C -0.211 4.211 4 N -0.318 5.318 5 C 0.147 3.853 6 C -0.564 4.564 7 H 0.068 0.932 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.780 3.220 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.208 1.208 14 C 0.315 3.685 15 O -0.451 6.451 16 C -0.156 4.156 17 H 0.164 0.836 18 C -0.116 4.116 19 C -0.142 4.142 20 C -0.114 4.114 21 C -0.076 4.076 22 C -0.167 4.167 23 C -0.101 4.101 24 C -0.154 4.154 25 C 0.028 3.972 26 N -0.286 5.286 27 C 0.354 3.646 28 O -0.403 6.403 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.015 0.985 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.116 0.884 42 H 0.154 0.846 43 H 0.182 0.818 44 H 0.177 0.823 45 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.806 -13.579 -13.586 19.294 hybrid contribution 1.110 0.714 0.973 1.640 sum -0.696 -12.865 -12.613 18.030 Atomic orbital electron populations 1.22123 0.93876 1.02474 1.02865 1.21432 0.95443 0.93749 0.87238 1.22092 1.00456 0.96092 1.02452 1.48258 1.48730 1.26339 1.08431 1.18647 0.95116 0.92652 0.78874 1.21626 1.08945 1.23572 1.02307 0.93179 1.25692 0.97580 0.98964 0.96538 1.70028 1.31101 1.44426 1.11186 0.85668 0.79102 0.79437 0.77811 1.18743 1.20522 1.20831 1.19819 0.78569 0.80613 0.89516 1.90685 1.54431 1.59295 1.40686 1.22057 1.05141 0.92326 0.96077 0.83626 1.23301 0.93715 0.93510 1.01122 1.20283 1.03430 0.91340 0.99116 1.18920 1.00868 0.94135 0.97511 1.20213 0.96729 0.97930 0.92709 1.21312 1.01970 0.93612 0.99778 1.21237 0.94042 0.98205 0.96599 1.20679 1.02302 0.97670 0.94786 1.18326 0.93352 0.96238 0.89275 1.43298 1.42270 1.17299 1.25723 1.19274 0.80928 0.81665 0.82737 1.90762 1.52170 1.71926 1.25461 0.94182 0.88544 0.92022 0.87026 0.94163 0.89279 0.93634 0.98495 0.95365 0.92660 0.85859 0.83374 0.88432 0.84557 0.81832 0.82298 0.73115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.17 71.98 0.66 -3.34 16 2 C 0.12 3.71 2.96 44.99 0.13 3.85 16 3 C -0.15 -4.80 8.47 71.98 0.61 -4.19 16 4 N -0.59 -23.83 2.39 -802.12 -1.91 -25.75 16 5 C 0.27 13.87 4.60 85.63 0.39 14.27 16 6 C -0.53 -29.53 7.83 25.60 0.20 -29.33 16 7 H 0.05 2.82 7.63 -2.91 -0.02 2.80 16 8 C 0.01 0.62 5.46 84.65 0.46 1.09 16 9 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 10 Si 0.95 45.09 29.54 68.60 2.03 47.12 16 11 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 14 C 0.53 21.59 6.15 87.66 0.54 22.13 16 15 O -0.57 -28.76 13.90 -3.02 -0.04 -28.80 16 16 C -0.13 -4.14 4.58 -11.71 -0.05 -4.20 16 17 H 0.15 4.24 8.14 -2.39 -0.02 4.22 16 18 C -0.08 -1.79 8.47 30.42 0.26 -1.53 16 19 C -0.14 -3.97 2.41 -54.14 -0.13 -4.10 16 20 C -0.11 -3.38 5.32 -19.84 -0.11 -3.49 16 21 C -0.06 -1.83 8.15 22.17 0.18 -1.65 16 22 C -0.15 -3.88 10.07 22.32 0.22 -3.66 16 23 C -0.08 -1.66 10.02 22.21 0.22 -1.44 16 24 C -0.13 -2.64 10.07 22.46 0.23 -2.41 16 25 C 0.12 3.13 7.12 38.37 0.27 3.40 16 26 N -0.64 -14.79 5.90 -303.37 -1.79 -16.58 16 27 C 0.57 15.96 8.47 87.71 0.74 16.71 16 28 O -0.53 -16.79 18.03 -3.05 -0.05 -16.84 16 29 H 0.04 1.26 6.66 -2.39 -0.02 1.25 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 2.64 5.21 -2.39 -0.01 2.62 16 33 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.75 6.92 -2.39 -0.02 1.73 16 36 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 37 H 0.03 1.49 6.43 -2.39 -0.02 1.48 16 38 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.15 2.45 8.14 -2.38 -0.02 2.43 16 41 H 0.10 3.57 6.99 -2.91 -0.02 3.55 16 42 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 43 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 44 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.43 7.04 8.96 -92.71 -0.83 6.21 16 Total: -1.00 -76.71 369.35 3.54 -73.17 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.19 Total: 20.61 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 4.84 Total: 2.09 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -3.42 Total: -97.36 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.10 Total: -45.64 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.71 3.54 -73.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931325322.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.835 kcal (2) G-P(sol) polarization free energy of solvation -76.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds