Wall clock time and date at job start Tue Mar 31 2020 15:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46737 * 2 1 4 4 H 1.09001 * 109.46890 * 305.00310 * 3 2 1 5 5 C 1.50700 * 109.46978 * 184.99941 * 3 2 1 6 6 H 1.07995 * 120.00309 * 239.99980 * 5 3 2 7 7 C 1.37884 * 119.99737 * 59.99952 * 5 3 2 8 8 N 1.31506 * 120.00193 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99666 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46660 * 60.00301 * 9 7 5 11 11 H 1.48497 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47242 * 300.00647 * 9 7 5 13 13 N 1.46499 * 109.47050 * 64.99909 * 3 2 1 14 14 C 1.34776 * 120.00396 * 275.00163 * 13 3 2 15 15 O 1.21585 * 119.99840 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99976 * 179.97438 * 14 13 3 17 17 C 1.39881 * 119.99819 * 184.52850 * 16 14 13 18 18 C 1.37810 * 119.62733 * 324.78773 * 17 16 14 19 19 C 1.40422 * 119.61512 * 180.27503 * 18 17 16 20 20 C 1.40609 * 121.16841 * 179.72125 * 19 18 17 21 21 C 1.36098 * 119.65300 * 180.02562 * 20 19 18 22 22 C 1.39358 * 120.95417 * 0.02562 * 21 20 19 23 23 C 1.36151 * 120.99001 * 359.40211 * 22 21 20 24 24 C 1.40407 * 119.69596 * 0.89931 * 23 22 21 25 25 C 1.41032 * 121.14962 * 179.13908 * 24 23 22 26 26 O 1.35799 * 120.10191 * 0.02562 * 25 24 23 27 27 C 1.42905 * 117.00029 * 179.97438 * 26 25 24 28 28 C 1.36476 * 119.78943 * 180.02562 * 25 24 23 29 29 H 1.09007 * 109.46976 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47634 * 299.99831 * 1 2 3 31 31 H 1.08997 * 109.47549 * 60.00042 * 1 2 3 32 32 H 1.09000 * 109.46969 * 240.00409 * 2 1 3 33 33 H 1.08998 * 109.47146 * 119.99599 * 2 1 3 34 34 H 0.96999 * 120.00133 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99529 * 94.99533 * 13 3 2 36 36 H 0.97001 * 120.00538 * 4.53876 * 16 14 13 37 37 H 1.08000 * 120.18656 * 359.97438 * 18 17 16 38 38 H 1.07990 * 120.17373 * 0.04312 * 20 19 18 39 39 H 1.07998 * 119.52278 * 179.97438 * 21 20 19 40 40 H 1.08006 * 119.50340 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.15194 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.46784 * 300.00522 * 27 26 25 43 43 H 1.09000 * 109.47081 * 59.99837 * 27 26 25 44 44 H 1.08991 * 109.47500 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.56506 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8815 -1.3818 10 1 6.5974 0.1475 -0.2349 11 1 6.3977 0.2180 -2.6509 12 1 6.4993 2.2817 -1.3820 13 7 1.6523 2.0975 1.2518 14 6 0.4349 2.6644 1.3670 15 8 -0.3414 2.6325 0.4318 16 7 0.0782 3.2664 2.5188 17 6 -1.2173 3.7711 2.6722 18 6 -1.8657 4.3240 1.5891 19 6 -3.1640 4.8358 1.7446 20 6 -3.8534 5.4124 0.6632 21 6 -5.1106 5.8994 0.8488 22 6 -5.7269 5.8359 2.0971 23 6 -5.0939 5.2743 3.1637 24 6 -3.7934 4.7670 3.0126 25 6 -3.1024 4.1951 4.1010 26 8 -3.6924 4.1266 5.3221 27 6 -2.9327 3.5338 6.3774 28 6 -1.8389 3.7109 3.9230 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0609 -2.9499 35 1 2.2718 2.1232 1.9978 36 1 0.7199 3.3499 3.2415 37 1 -1.3761 4.3679 0.6274 38 1 -3.3878 5.4682 -0.3096 39 1 -5.6380 6.3421 0.0168 40 1 -6.7252 6.2300 2.2181 41 1 -5.5843 5.2319 4.1250 42 1 -2.6851 2.5056 6.1135 43 1 -2.0144 4.1016 6.5273 44 1 -3.5188 3.5425 7.2963 45 1 -1.3129 3.2741 4.7590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933775977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:22 Heat of formation + Delta-G solvation = -20.979959 kcal Electronic energy + Delta-G solvation = -27578.327558 eV Core-core repulsion = 23754.157506 eV Total energy + Delta-G solvation = -3824.170052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92214 -39.63832 -38.58265 -36.65232 -34.95609 -33.61258 -32.40140 -32.00347 -30.88362 -29.71464 -28.48469 -27.40896 -26.73238 -23.66674 -23.06973 -22.60790 -21.76377 -20.70483 -19.55216 -18.38137 -18.32799 -17.57503 -16.72253 -16.25582 -15.95128 -15.72193 -15.46291 -15.07009 -14.82031 -14.44562 -14.14111 -14.03833 -13.53722 -13.44559 -13.15371 -13.11442 -12.67561 -12.37856 -12.20009 -11.93243 -11.80308 -11.58535 -11.27377 -11.18209 -11.06305 -11.03691 -10.95972 -10.82177 -10.33470 -10.20008 -9.70985 -9.50543 -9.49481 -9.25190 -9.05898 -8.52672 -8.30649 -7.87048 -7.25117 -6.14569 -4.24193 0.67293 1.01563 2.15273 2.94151 3.01650 3.19626 3.23739 3.29537 3.31621 3.83632 4.21027 4.30025 4.64496 4.79972 4.89975 4.92743 4.93644 4.96788 5.15251 5.17298 5.25467 5.28017 5.35139 5.41422 5.53442 5.75545 6.03816 6.11612 6.16887 6.33753 6.40537 6.47878 6.50763 6.55998 6.65473 6.73602 6.93448 6.99990 7.02322 7.13274 7.32164 7.34358 7.36743 7.44402 7.62139 7.84704 7.96265 8.16672 8.70661 8.82040 9.22680 9.44198 10.90706 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.002795 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.676440 B =10016.569450 C =10782.148313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.718 5.718 14 C 0.692 3.308 15 O -0.572 6.572 16 N -0.696 5.696 17 C 0.214 3.786 18 C -0.150 4.150 19 C 0.002 3.998 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.141 4.141 23 C -0.081 4.081 24 C -0.089 4.089 25 C 0.155 3.845 26 O -0.313 6.313 27 C 0.026 3.974 28 C -0.239 4.239 29 H 0.021 0.979 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.385 0.615 36 H 0.401 0.599 37 H 0.152 0.848 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.177 8.579 14.382 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.369 5.369 14 C 0.392 3.608 15 O -0.449 6.449 16 N -0.344 5.344 17 C 0.117 3.883 18 C -0.171 4.171 19 C 0.001 3.999 20 C -0.130 4.130 21 C -0.125 4.125 22 C -0.159 4.159 23 C -0.099 4.099 24 C -0.090 4.090 25 C 0.109 3.891 26 O -0.225 6.225 27 C -0.069 4.069 28 C -0.260 4.260 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.217 0.783 36 H 0.236 0.764 37 H 0.169 0.831 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.942 8.413 13.324 21.040 hybrid contribution 1.930 -0.291 0.803 2.110 sum -12.012 8.122 14.127 20.244 Atomic orbital electron populations 1.21816 0.98230 0.97918 1.01315 1.21959 0.92703 0.99858 1.02203 1.18722 0.93971 0.88888 0.79892 0.93164 1.21179 0.90640 1.39265 1.06355 0.92169 1.24872 0.98598 0.94777 0.95350 1.69879 1.35240 1.37394 1.09312 0.86510 0.84816 0.78308 0.77464 1.20194 1.21104 1.20190 1.45843 1.13198 1.58529 1.19337 1.16102 0.83709 0.78705 0.82243 1.90894 1.51653 1.64539 1.37793 1.42872 1.11879 1.61332 1.18295 1.17035 0.84852 0.93421 0.93033 1.21402 0.94733 1.00552 1.00445 1.17776 0.93745 0.96487 0.91926 1.21019 0.95001 0.98803 0.98145 1.20853 0.95193 0.99202 0.97233 1.20745 1.00280 1.01771 0.93138 1.20868 0.93336 0.96560 0.99094 1.17393 0.95559 1.04543 0.91499 1.18282 0.90863 0.95365 0.84576 1.85998 1.43311 1.76871 1.16369 1.23079 0.97044 0.97863 0.88888 1.20529 0.96045 1.10942 0.98528 0.96016 0.94319 0.93097 0.88252 0.95140 0.92446 0.78271 0.76414 0.83079 0.85201 0.86124 0.86286 0.85546 0.92430 0.92514 0.88210 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.29 7.06 2.24 -69.08 -0.15 6.90 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.34 11.29 55.43 0.63 -23.71 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 13 N -0.72 -14.39 5.03 -59.81 -0.30 -14.69 16 14 C 0.69 13.52 6.96 -86.92 -0.61 12.91 16 15 O -0.57 -13.07 10.89 5.29 0.06 -13.01 16 16 N -0.70 -10.57 5.33 -14.27 -0.08 -10.65 16 17 C 0.21 3.29 6.29 -83.76 -0.53 2.76 16 18 C -0.15 -2.49 8.43 -38.92 -0.33 -2.82 16 19 C 0.00 0.02 5.74 -106.85 -0.61 -0.59 16 20 C -0.11 -1.47 9.77 -39.46 -0.39 -1.86 16 21 C -0.11 -1.19 9.95 -39.93 -0.40 -1.59 16 22 C -0.14 -1.52 9.95 -39.92 -0.40 -1.91 16 23 C -0.08 -0.97 9.55 -39.52 -0.38 -1.35 16 24 C -0.09 -1.25 5.75 -106.69 -0.61 -1.86 16 25 C 0.16 2.04 6.66 -39.16 -0.26 1.78 16 26 O -0.31 -3.50 9.70 -19.11 -0.19 -3.69 16 27 C 0.03 0.19 9.81 101.05 0.99 1.18 16 28 C -0.24 -3.11 8.88 -39.63 -0.35 -3.46 16 29 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 31 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.39 6.60 8.56 -40.82 -0.35 6.25 16 36 H 0.40 4.66 8.84 -40.82 -0.36 4.30 16 37 H 0.15 2.82 6.18 -52.49 -0.32 2.49 16 38 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.13 1.32 7.60 -52.49 -0.40 0.92 16 42 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 43 H 0.06 0.36 7.65 -51.93 -0.40 -0.03 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.13 1.33 6.19 -52.48 -0.33 1.01 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -31.01 365.39 -9.67 -40.68 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.03 Total: 12.60 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -4.25 Total: -8.31 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.25 Total: -49.05 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.13 Total: -16.69 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.01 -9.67 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933775977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.699 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds