Wall clock time and date at job start Tue Mar 31 2020 15:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46737 * 2 1 4 4 H 1.09001 * 109.46890 * 305.00310 * 3 2 1 5 5 C 1.50700 * 109.46978 * 184.99941 * 3 2 1 6 6 H 1.07995 * 120.00309 * 239.99980 * 5 3 2 7 7 C 1.37884 * 119.99737 * 59.99952 * 5 3 2 8 8 N 1.31506 * 120.00193 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99666 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46660 * 60.00301 * 9 7 5 11 11 H 1.48497 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47242 * 300.00647 * 9 7 5 13 13 N 1.46499 * 109.47050 * 64.99909 * 3 2 1 14 14 C 1.34776 * 120.00396 * 275.00163 * 13 3 2 15 15 O 1.21585 * 119.99840 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99976 * 179.97438 * 14 13 3 17 17 C 1.39881 * 119.99819 * 184.52850 * 16 14 13 18 18 C 1.37810 * 119.62733 * 324.78773 * 17 16 14 19 19 C 1.40422 * 119.61512 * 180.27503 * 18 17 16 20 20 C 1.40609 * 121.16841 * 179.72125 * 19 18 17 21 21 C 1.36098 * 119.65300 * 180.02562 * 20 19 18 22 22 C 1.39358 * 120.95417 * 0.02562 * 21 20 19 23 23 C 1.36151 * 120.99001 * 359.40211 * 22 21 20 24 24 C 1.40407 * 119.69596 * 0.89931 * 23 22 21 25 25 C 1.41032 * 121.14962 * 179.13908 * 24 23 22 26 26 O 1.35799 * 120.10191 * 0.02562 * 25 24 23 27 27 C 1.42905 * 117.00029 * 179.97438 * 26 25 24 28 28 C 1.36476 * 119.78943 * 180.02562 * 25 24 23 29 29 H 1.09007 * 109.46976 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47634 * 299.99831 * 1 2 3 31 31 H 1.08997 * 109.47549 * 60.00042 * 1 2 3 32 32 H 1.09000 * 109.46969 * 240.00409 * 2 1 3 33 33 H 1.08998 * 109.47146 * 119.99599 * 2 1 3 34 34 H 0.96999 * 120.00133 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99529 * 94.99533 * 13 3 2 36 36 H 0.97001 * 120.00538 * 4.53876 * 16 14 13 37 37 H 1.08000 * 120.18656 * 359.97438 * 18 17 16 38 38 H 1.07990 * 120.17373 * 0.04312 * 20 19 18 39 39 H 1.07998 * 119.52278 * 179.97438 * 21 20 19 40 40 H 1.08006 * 119.50340 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.15194 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.46784 * 300.00522 * 27 26 25 43 43 H 1.09000 * 109.47081 * 59.99837 * 27 26 25 44 44 H 1.08991 * 109.47500 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.56506 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8815 -1.3818 10 1 6.5974 0.1475 -0.2349 11 1 6.3977 0.2180 -2.6509 12 1 6.4993 2.2817 -1.3820 13 7 1.6523 2.0975 1.2518 14 6 0.4349 2.6644 1.3670 15 8 -0.3414 2.6325 0.4318 16 7 0.0782 3.2664 2.5188 17 6 -1.2173 3.7711 2.6722 18 6 -1.8657 4.3240 1.5891 19 6 -3.1640 4.8358 1.7446 20 6 -3.8534 5.4124 0.6632 21 6 -5.1106 5.8994 0.8488 22 6 -5.7269 5.8359 2.0971 23 6 -5.0939 5.2743 3.1637 24 6 -3.7934 4.7670 3.0126 25 6 -3.1024 4.1951 4.1010 26 8 -3.6924 4.1266 5.3221 27 6 -2.9327 3.5338 6.3774 28 6 -1.8389 3.7109 3.9230 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0609 -2.9499 35 1 2.2718 2.1232 1.9978 36 1 0.7199 3.3499 3.2415 37 1 -1.3761 4.3679 0.6274 38 1 -3.3878 5.4682 -0.3096 39 1 -5.6380 6.3421 0.0168 40 1 -6.7252 6.2300 2.2181 41 1 -5.5843 5.2319 4.1250 42 1 -2.6851 2.5056 6.1135 43 1 -2.0144 4.1016 6.5273 44 1 -3.5188 3.5425 7.2963 45 1 -1.3129 3.2741 4.7590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933775977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:20 Heat of formation + Delta-G solvation = -40.025820 kcal Electronic energy + Delta-G solvation = -27579.153449 eV Core-core repulsion = 23754.157506 eV Total energy + Delta-G solvation = -3824.995943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.02784 -41.02925 -39.47445 -38.02285 -36.61735 -34.95650 -34.19155 -33.04385 -32.61909 -30.80707 -29.55639 -28.75927 -27.98461 -25.25110 -24.38516 -23.81825 -22.79981 -22.20575 -21.36305 -19.88826 -19.47977 -18.50898 -18.14887 -17.54883 -17.24621 -16.83118 -16.70124 -16.46268 -16.24807 -15.93205 -15.25305 -15.17113 -14.98699 -14.59681 -14.54805 -14.21859 -13.97426 -13.96631 -13.52896 -13.35607 -13.17150 -12.89862 -12.69349 -12.63480 -12.60090 -12.26218 -12.19742 -12.07980 -11.97332 -11.94747 -11.58586 -11.09991 -10.99414 -10.61381 -10.52974 -10.42721 -9.70410 -9.29472 -8.35187 -8.15319 -6.32691 -0.33778 -0.01844 1.11420 1.45452 1.47343 1.54866 1.72150 1.92746 2.23653 2.36743 2.43749 3.13877 3.15939 3.44156 3.71501 3.98182 4.03470 4.16315 4.23804 4.25918 4.42053 4.42597 4.49232 4.49695 4.56882 4.60365 4.70728 4.76966 4.78569 5.02932 5.06827 5.13675 5.16688 5.20339 5.31228 5.42759 5.44905 5.53390 5.60762 5.61222 5.69333 5.76667 5.81973 5.88364 6.06996 6.16861 6.27036 6.37372 6.75062 7.24997 7.35690 7.71629 8.89861 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.002795 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.676440 B =10016.569450 C =10782.148313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.297 3.703 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.714 5.714 14 C 0.692 3.308 15 O -0.608 6.608 16 N -0.677 5.677 17 C 0.200 3.800 18 C -0.178 4.178 19 C -0.016 4.016 20 C -0.139 4.139 21 C -0.096 4.096 22 C -0.135 4.135 23 C -0.086 4.086 24 C -0.107 4.107 25 C 0.162 3.838 26 O -0.316 6.316 27 C 0.015 3.985 28 C -0.241 4.241 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.420 0.580 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.145 0.855 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.126 0.874 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.941 9.101 17.276 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.366 5.366 14 C 0.392 3.608 15 O -0.488 6.488 16 N -0.326 5.326 17 C 0.104 3.896 18 C -0.200 4.200 19 C -0.016 4.016 20 C -0.157 4.157 21 C -0.114 4.114 22 C -0.153 4.153 23 C -0.104 4.104 24 C -0.108 4.108 25 C 0.115 3.885 26 O -0.229 6.229 27 C -0.079 4.079 28 C -0.262 4.262 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.258 0.742 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.163 0.837 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.145 0.855 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.706 8.962 16.302 23.714 hybrid contribution 1.984 -0.362 -0.038 2.017 sum -12.722 8.600 16.264 22.368 Atomic orbital electron populations 1.21636 0.97185 0.98805 1.00096 1.21802 0.93492 0.99329 1.01310 1.18266 0.93447 0.88754 0.80152 0.98259 1.21532 0.91280 1.39085 1.06787 0.90941 1.25751 1.03250 0.94374 0.94995 1.70039 1.37134 1.38222 1.09836 0.85430 0.79134 0.78398 0.77549 1.18881 1.21274 1.19741 1.45437 1.13936 1.58684 1.18564 1.16173 0.83053 0.78636 0.82904 1.90887 1.52655 1.65713 1.39551 1.42502 1.12529 1.60232 1.17333 1.17211 0.84709 0.93776 0.93876 1.21235 0.96069 1.03037 0.99649 1.17916 0.93386 0.97075 0.93265 1.21160 0.96347 1.00355 0.97870 1.21234 0.94132 0.97439 0.98577 1.21174 1.01501 1.00380 0.92265 1.21151 0.92546 0.96260 1.00423 1.17674 0.96694 1.05091 0.91337 1.18355 0.90651 0.94152 0.85297 1.86004 1.43958 1.76871 1.16081 1.23435 0.97981 0.98002 0.88519 1.20632 0.96256 1.11215 0.98080 0.93889 0.94187 0.95624 0.90872 0.94037 0.92570 0.76331 0.74168 0.86403 0.85638 0.83239 0.82779 0.83702 0.92033 0.91289 0.85543 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.51 71.98 0.61 -4.95 16 2 C -0.12 -5.94 5.45 30.60 0.17 -5.78 16 3 C 0.30 15.15 2.24 44.25 0.10 15.25 16 4 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 5 C -0.55 -28.61 8.73 25.60 0.22 -28.39 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.89 5.29 84.66 0.45 1.33 16 8 N -0.91 -52.02 11.29 21.45 0.24 -51.78 16 9 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 N -0.71 -29.11 5.03 -461.41 -2.32 -31.43 16 14 C 0.69 27.94 6.96 179.06 1.25 29.19 16 15 O -0.61 -29.60 10.89 -3.98 -0.04 -29.64 16 16 N -0.68 -20.68 5.33 -317.31 -1.69 -22.38 16 17 C 0.20 6.28 6.29 38.13 0.24 6.52 16 18 C -0.18 -6.33 8.43 22.70 0.19 -6.13 16 19 C -0.02 -0.49 5.74 -21.31 -0.12 -0.61 16 20 C -0.14 -3.80 9.77 22.35 0.22 -3.58 16 21 C -0.10 -2.00 9.95 22.04 0.22 -1.78 16 22 C -0.14 -2.53 9.95 22.05 0.22 -2.31 16 23 C -0.09 -1.88 9.55 22.31 0.21 -1.67 16 24 C -0.11 -2.93 5.75 -21.20 -0.12 -3.05 16 25 C 0.16 4.04 6.66 22.54 0.15 4.19 16 26 O -0.32 -6.26 9.70 -91.29 -0.89 -7.14 16 27 C 0.01 0.17 9.81 113.37 1.11 1.28 16 28 C -0.24 -5.97 8.88 22.24 0.20 -5.78 16 29 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.04 1.82 5.65 -2.38 -0.01 1.80 16 31 H 0.02 1.27 7.84 -2.39 -0.02 1.26 16 32 H 0.07 4.04 5.95 -2.39 -0.01 4.02 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 35 H 0.40 13.54 8.56 -92.71 -0.79 12.75 16 36 H 0.42 9.32 8.84 -92.71 -0.82 8.50 16 37 H 0.12 4.90 6.18 -2.91 -0.02 4.88 16 38 H 0.13 3.36 8.06 -2.92 -0.02 3.34 16 39 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.15 2.58 7.60 -2.91 -0.02 2.56 16 42 H 0.06 0.68 7.65 -2.39 -0.02 0.67 16 43 H 0.07 0.65 7.65 -2.39 -0.02 0.63 16 44 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.16 2.84 6.19 -2.91 -0.02 2.82 16 Total: -1.00 -70.79 365.39 2.07 -68.72 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: -0.57 Total: 36.24 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 5.31 Total: -6.25 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.77 Total: -105.58 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.93 Total: -36.78 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -70.79 2.07 -68.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933775977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.691 kcal (2) G-P(sol) polarization free energy of solvation -70.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds