Wall clock time and date at job start Tue Mar 31 2020 15:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 C 1.50696 * 109.47605 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99517 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00237 * 179.97438 * 4 3 2 7 7 C 1.47019 * 125.64675 * 0.02750 * 6 4 3 8 8 C 1.54334 * 107.26908 * 178.89348 * 7 6 4 9 9 C 1.55158 * 102.94108 * 337.80492 * 8 7 6 10 10 H 1.08998 * 110.99782 * 277.38691 * 9 8 7 11 11 C 1.53001 * 111.00177 * 153.57611 * 9 8 7 12 12 H 1.09000 * 109.47263 * 303.95877 * 11 9 8 13 13 C 1.53004 * 109.46969 * 63.95832 * 11 9 8 14 14 N 1.46495 * 109.46840 * 183.95869 * 11 9 8 15 15 C 1.34772 * 120.00048 * 155.00532 * 14 11 9 16 16 O 1.21280 * 120.00256 * 359.97438 * 15 14 11 17 17 C 1.50698 * 120.00303 * 179.97438 * 15 14 11 18 18 S 1.80996 * 109.47493 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00416 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99754 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00307 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99942 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00324 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46787 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47166 * 119.99668 * 23 21 19 26 26 H 1.48502 * 109.47121 * 239.99894 * 23 21 19 27 27 C 1.47429 * 125.64606 * 179.97438 * 6 4 3 28 28 H 1.09001 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47328 * 299.99555 * 1 2 3 30 30 H 1.09000 * 109.47460 * 60.00454 * 1 2 3 31 31 H 1.08994 * 109.47592 * 239.99992 * 2 1 3 32 32 H 1.09000 * 109.47460 * 119.99546 * 2 1 3 33 33 H 1.09002 * 109.47230 * 59.99613 * 3 2 1 34 34 H 1.09000 * 109.47055 * 300.00284 * 3 2 1 35 35 H 1.08994 * 109.89097 * 59.47687 * 7 6 4 36 36 H 1.09002 * 109.87978 * 298.30321 * 7 6 4 37 37 H 1.09004 * 110.71719 * 219.43732 * 8 7 6 38 38 H 1.08996 * 110.71544 * 96.16844 * 8 7 6 39 39 H 1.08998 * 109.47140 * 294.92353 * 13 11 9 40 40 H 1.09003 * 109.47121 * 174.91933 * 13 11 9 41 41 H 1.09004 * 109.47238 * 54.92071 * 13 11 9 42 42 H 0.97008 * 120.00233 * 334.99729 * 14 11 9 43 43 H 1.09007 * 109.47376 * 299.99600 * 17 15 14 44 44 H 1.09001 * 109.47427 * 59.99288 * 17 15 14 45 45 H 0.96995 * 120.00169 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.36565 * 85.34157 * 27 6 4 47 47 H 1.08999 * 110.37007 * 323.01307 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 8 4.1533 0.3923 -0.0006 6 7 4.2207 2.6098 -0.0013 7 6 3.6144 3.9492 -0.0008 8 6 4.7679 4.9742 0.0266 9 6 5.9480 4.1538 0.6112 10 1 5.8987 4.1198 1.6996 11 6 7.2917 4.7162 0.1432 12 1 7.3155 4.7413 -0.9462 13 6 7.4695 6.1341 0.6901 14 7 8.3761 3.8632 0.6358 15 6 9.5550 3.8281 -0.0163 16 8 9.7181 4.5022 -1.0112 17 6 10.6708 2.9512 0.4907 18 16 12.1115 3.1214 -0.5916 19 6 13.2291 2.0209 0.2111 20 1 12.9204 1.4916 1.1004 21 6 14.5065 1.8351 -0.2989 22 7 14.8829 2.4806 -1.3826 23 14 15.6917 0.6689 0.5525 24 1 15.0308 0.0721 1.7410 25 1 16.0866 -0.4098 -0.3886 26 1 16.8999 1.4177 0.9824 27 6 5.6879 2.7549 -0.0014 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 2.9880 4.0724 0.8826 36 1 3.0181 4.0863 -0.9029 37 1 4.5222 5.8138 0.6769 38 1 5.0002 5.3202 -0.9805 39 1 6.7160 6.7892 0.2528 40 1 8.4632 6.5007 0.4329 41 1 7.3557 6.1223 1.7741 42 1 8.2457 3.3238 1.4315 43 1 10.9389 3.2532 1.5032 44 1 10.3421 1.9119 0.4968 45 1 15.7758 2.3511 -1.7388 46 1 6.0735 2.7091 -1.0199 47 1 6.1458 1.9803 0.6138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049784962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:26 Heat of formation + Delta-G solvation = -94.041690 kcal Electronic energy + Delta-G solvation = -25339.747321 eV Core-core repulsion = 21647.853026 eV Total energy + Delta-G solvation = -3691.894295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.58827 -39.39967 -38.00931 -35.29214 -34.72827 -32.42124 -32.34335 -30.41258 -29.60942 -28.45198 -27.87840 -25.47488 -24.10158 -23.07727 -21.89547 -20.66365 -20.30047 -19.41181 -17.86373 -17.41742 -16.98933 -16.37435 -16.12447 -15.72472 -15.18867 -14.95810 -14.79035 -14.53920 -14.10374 -13.98816 -13.82757 -13.59190 -13.28034 -13.05876 -12.94623 -12.83162 -12.59661 -12.33140 -12.28677 -12.10358 -11.97216 -11.77060 -11.54793 -11.43003 -11.23784 -11.11338 -11.05716 -11.00572 -10.93293 -10.73355 -10.08415 -9.79044 -9.38494 -9.06592 -8.97800 -8.92586 -8.21998 -6.48389 -6.20548 -3.90749 2.36357 2.62602 3.01578 3.09513 3.22895 3.29061 3.33716 3.66899 4.01996 4.09122 4.21767 4.33970 4.42723 4.49838 4.59749 4.73454 4.89068 4.92754 5.00192 5.08437 5.14659 5.15225 5.16976 5.20434 5.22946 5.28174 5.34380 5.40972 5.53587 5.55178 5.59574 5.66324 5.67236 5.74538 5.77312 5.90564 5.90661 5.98575 5.99865 6.15383 6.17510 6.63997 7.18371 7.61509 7.69946 7.88526 8.36990 8.61366 9.25125 10.86949 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015854 B = 0.002229 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.708164 B =12557.576391 C =13954.484066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.524 3.476 5 O -0.537 6.537 6 N -0.623 5.623 7 C 0.101 3.899 8 C -0.123 4.123 9 C -0.108 4.108 10 H 0.091 0.909 11 C 0.155 3.845 12 H 0.091 0.909 13 C -0.162 4.162 14 N -0.736 5.736 15 C 0.535 3.465 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.110 3.890 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.073 0.927 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.936 4.335 6.262 30.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.175 4.175 4 C 0.313 3.687 5 O -0.413 6.413 6 N -0.358 5.358 7 C -0.022 4.022 8 C -0.161 4.161 9 C -0.128 4.128 10 H 0.109 0.891 11 C 0.050 3.950 12 H 0.109 0.891 13 C -0.221 4.221 14 N -0.390 5.390 15 C 0.321 3.679 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.012 4.012 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -29.245 4.845 4.451 29.976 hybrid contribution 0.532 -1.644 2.101 2.720 sum -28.712 3.201 6.552 29.624 Atomic orbital electron populations 1.21787 0.95391 1.02061 1.01719 1.21303 0.95304 0.94610 1.03720 1.21700 0.91337 1.00222 1.04198 1.20494 0.90169 0.82115 0.75880 1.90742 1.70497 1.30501 1.49578 1.48570 1.07527 1.05784 1.73894 1.22067 0.96473 0.81866 1.01839 1.22677 0.93350 0.97332 1.02772 1.22681 0.94458 0.94584 1.01078 0.89101 1.20794 0.84095 0.89955 1.00171 0.89101 1.22183 1.03104 0.95800 1.00977 1.46093 1.13479 1.47775 1.31693 1.20289 0.82517 0.81939 0.83153 1.90697 1.80871 1.42585 1.24961 1.23543 0.99971 1.01431 1.05569 1.85369 1.03178 1.59642 1.35193 1.22912 1.00217 1.29948 1.15191 0.90877 1.24995 0.97367 0.96233 0.95031 1.70028 1.19557 1.40258 1.20474 0.86117 0.80115 0.80010 0.79258 1.19612 1.20557 1.20582 1.22282 0.80196 0.96972 1.01739 0.92318 0.92716 0.92679 0.91147 0.91189 0.89040 0.89012 0.91214 0.91129 0.89366 0.89782 0.91765 0.91438 0.92557 0.76883 0.89246 0.89205 0.92255 0.90910 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.15 0.37 -0.42 16 2 C -0.11 -0.82 5.22 -26.73 -0.14 -0.96 16 3 C -0.13 -0.89 4.89 -27.88 -0.14 -1.03 16 4 C 0.52 5.58 7.85 -10.99 -0.09 5.49 16 5 O -0.54 -8.14 16.24 5.56 0.09 -8.05 16 6 N -0.62 -5.59 3.33 -170.51 -0.57 -6.16 16 7 C 0.10 0.54 6.49 -3.06 -0.02 0.52 16 8 C -0.12 -0.64 5.56 -24.89 -0.14 -0.78 16 9 C -0.11 -0.81 2.63 -88.47 -0.23 -1.04 16 10 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 11 C 0.16 1.61 2.08 -67.93 -0.14 1.47 16 12 H 0.09 1.13 7.57 -51.93 -0.39 0.74 16 13 C -0.16 -1.54 9.23 37.16 0.34 -1.20 16 14 N -0.74 -9.30 4.83 -53.81 -0.26 -9.56 16 15 C 0.53 9.72 7.81 -10.99 -0.09 9.64 16 16 O -0.52 -11.41 15.52 5.56 0.09 -11.33 16 17 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 23 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.11 1.10 6.14 -2.52 -0.02 1.09 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 39 H 0.06 0.48 7.60 -51.93 -0.39 0.08 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.40 4.04 8.60 -40.82 -0.35 3.68 16 43 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 44 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.07 0.84 8.03 -51.93 -0.42 0.43 16 47 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 LS Contribution 399.60 15.07 6.02 6.02 Total: -1.00 -36.86 399.60 -9.27 -46.13 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.27 Total: -0.99 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 0.13 Total: -3.22 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.09 Total: -41.34 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.18 Total: -19.38 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.86 -9.27 -46.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049784962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.913 kcal (2) G-P(sol) polarization free energy of solvation -36.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds