Wall clock time and date at job start Tue Mar 31 2020 15:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 C 1.50696 * 109.47605 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99517 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00237 * 179.97438 * 4 3 2 7 7 C 1.47019 * 125.64675 * 0.02750 * 6 4 3 8 8 C 1.54334 * 107.26908 * 178.89348 * 7 6 4 9 9 C 1.55158 * 102.94108 * 337.80492 * 8 7 6 10 10 H 1.08998 * 110.99782 * 277.38691 * 9 8 7 11 11 C 1.53001 * 111.00177 * 153.57611 * 9 8 7 12 12 H 1.09000 * 109.47263 * 303.95877 * 11 9 8 13 13 C 1.53004 * 109.46969 * 63.95832 * 11 9 8 14 14 N 1.46495 * 109.46840 * 183.95869 * 11 9 8 15 15 C 1.34772 * 120.00048 * 155.00532 * 14 11 9 16 16 O 1.21280 * 120.00256 * 359.97438 * 15 14 11 17 17 C 1.50698 * 120.00303 * 179.97438 * 15 14 11 18 18 S 1.80996 * 109.47493 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00416 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99754 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00307 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99942 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00324 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46787 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47166 * 119.99668 * 23 21 19 26 26 H 1.48502 * 109.47121 * 239.99894 * 23 21 19 27 27 C 1.47429 * 125.64606 * 179.97438 * 6 4 3 28 28 H 1.09001 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47328 * 299.99555 * 1 2 3 30 30 H 1.09000 * 109.47460 * 60.00454 * 1 2 3 31 31 H 1.08994 * 109.47592 * 239.99992 * 2 1 3 32 32 H 1.09000 * 109.47460 * 119.99546 * 2 1 3 33 33 H 1.09002 * 109.47230 * 59.99613 * 3 2 1 34 34 H 1.09000 * 109.47055 * 300.00284 * 3 2 1 35 35 H 1.08994 * 109.89097 * 59.47687 * 7 6 4 36 36 H 1.09002 * 109.87978 * 298.30321 * 7 6 4 37 37 H 1.09004 * 110.71719 * 219.43732 * 8 7 6 38 38 H 1.08996 * 110.71544 * 96.16844 * 8 7 6 39 39 H 1.08998 * 109.47140 * 294.92353 * 13 11 9 40 40 H 1.09003 * 109.47121 * 174.91933 * 13 11 9 41 41 H 1.09004 * 109.47238 * 54.92071 * 13 11 9 42 42 H 0.97008 * 120.00233 * 334.99729 * 14 11 9 43 43 H 1.09007 * 109.47376 * 299.99600 * 17 15 14 44 44 H 1.09001 * 109.47427 * 59.99288 * 17 15 14 45 45 H 0.96995 * 120.00169 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.36565 * 85.34157 * 27 6 4 47 47 H 1.08999 * 110.37007 * 323.01307 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 8 4.1533 0.3923 -0.0006 6 7 4.2207 2.6098 -0.0013 7 6 3.6144 3.9492 -0.0008 8 6 4.7679 4.9742 0.0266 9 6 5.9480 4.1538 0.6112 10 1 5.8987 4.1198 1.6996 11 6 7.2917 4.7162 0.1432 12 1 7.3155 4.7413 -0.9462 13 6 7.4695 6.1341 0.6901 14 7 8.3761 3.8632 0.6358 15 6 9.5550 3.8281 -0.0163 16 8 9.7181 4.5022 -1.0112 17 6 10.6708 2.9512 0.4907 18 16 12.1115 3.1214 -0.5916 19 6 13.2291 2.0209 0.2111 20 1 12.9204 1.4916 1.1004 21 6 14.5065 1.8351 -0.2989 22 7 14.8829 2.4806 -1.3826 23 14 15.6917 0.6689 0.5525 24 1 15.0308 0.0721 1.7410 25 1 16.0866 -0.4098 -0.3886 26 1 16.8999 1.4177 0.9824 27 6 5.6879 2.7549 -0.0014 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 2.9880 4.0724 0.8826 36 1 3.0181 4.0863 -0.9029 37 1 4.5222 5.8138 0.6769 38 1 5.0002 5.3202 -0.9805 39 1 6.7160 6.7892 0.2528 40 1 8.4632 6.5007 0.4329 41 1 7.3557 6.1223 1.7741 42 1 8.2457 3.3238 1.4315 43 1 10.9389 3.2532 1.5032 44 1 10.3421 1.9119 0.4968 45 1 15.7758 2.3511 -1.7388 46 1 6.0735 2.7091 -1.0199 47 1 6.1458 1.9803 0.6138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049784962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:25 Heat of formation + Delta-G solvation = -119.723227 kcal Electronic energy + Delta-G solvation = -25340.860956 eV Core-core repulsion = 21647.853026 eV Total energy + Delta-G solvation = -3693.007930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.39327 -40.62687 -38.92284 -36.35307 -35.31552 -34.60533 -33.40690 -31.42491 -30.23097 -29.75791 -28.44291 -27.67912 -24.82016 -23.83373 -22.45295 -21.63836 -21.42514 -20.13595 -19.78305 -18.20511 -17.90936 -17.72319 -16.96621 -16.89826 -16.65432 -16.38054 -15.99767 -15.72041 -15.28792 -14.87409 -14.65810 -14.50905 -14.38073 -14.25906 -14.02185 -13.69755 -13.42299 -13.36601 -13.17991 -12.93300 -12.89258 -12.88053 -12.68409 -12.66225 -12.53502 -12.14269 -12.04451 -11.89630 -11.73284 -11.65960 -11.57212 -11.17693 -10.94973 -10.89302 -10.29809 -10.12564 -9.70364 -8.68249 -8.36876 -6.14662 1.25458 1.39490 1.45214 1.56786 1.58945 1.61516 1.95234 2.23737 2.28172 2.97158 3.28308 3.38441 3.49007 3.68532 3.80738 3.96926 3.99306 4.08565 4.21858 4.27620 4.31117 4.34930 4.39653 4.48680 4.50267 4.52452 4.67329 4.68417 4.73074 4.80718 4.83937 4.87880 4.91923 5.03006 5.10686 5.21422 5.23045 5.26274 5.31851 5.37692 5.40095 5.45815 5.54373 6.18047 6.49100 6.49850 7.04560 7.12103 7.24677 8.72625 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015854 B = 0.002229 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.708164 B =12557.576391 C =13954.484066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.124 4.124 4 C 0.513 3.487 5 O -0.597 6.597 6 N -0.622 5.622 7 C 0.095 3.905 8 C -0.117 4.117 9 C -0.092 4.092 10 H 0.112 0.888 11 C 0.153 3.847 12 H 0.066 0.934 13 C -0.156 4.156 14 N -0.712 5.712 15 C 0.537 3.463 16 O -0.563 6.563 17 C -0.132 4.132 18 S -0.149 6.149 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.272 1.272 27 C 0.105 3.895 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.031 0.969 41 H 0.076 0.924 42 H 0.413 0.587 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.271 0.729 46 H 0.047 0.953 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.695 5.206 8.646 34.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.163 4.163 4 C 0.304 3.696 5 O -0.478 6.478 6 N -0.355 5.355 7 C -0.026 4.026 8 C -0.155 4.155 9 C -0.111 4.111 10 H 0.130 0.870 11 C 0.049 3.951 12 H 0.084 0.916 13 C -0.214 4.214 14 N -0.366 5.366 15 C 0.323 3.677 16 O -0.441 6.441 17 C -0.284 4.284 18 S 0.079 5.921 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.182 1.182 25 H -0.199 1.199 26 H -0.197 1.197 27 C -0.018 4.018 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.249 0.751 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -32.072 5.754 6.874 33.301 hybrid contribution 1.273 -1.883 1.357 2.647 sum -30.799 3.871 8.231 32.114 Atomic orbital electron populations 1.21742 0.93274 1.02375 1.02922 1.21284 0.97032 0.95056 1.01740 1.21733 0.88020 1.00001 1.06581 1.21326 0.91854 0.81622 0.74798 1.90712 1.71897 1.32727 1.52459 1.48700 1.07052 1.07085 1.72653 1.22387 0.96715 0.79383 1.04102 1.22752 0.91764 0.97829 1.03180 1.22564 0.93444 0.93098 1.02027 0.87000 1.20987 0.84552 0.90592 0.98997 0.91554 1.22128 1.01919 0.94905 1.02421 1.45900 1.12160 1.47321 1.31212 1.19957 0.83557 0.81322 0.82896 1.90683 1.81850 1.44506 1.27054 1.23398 0.97486 1.02929 1.04556 1.85513 1.07429 1.60352 1.38846 1.23237 1.00782 1.30049 1.15426 0.90096 1.26132 0.99382 0.98001 0.95671 1.70185 1.20267 1.42012 1.22232 0.84904 0.77333 0.77396 0.78302 1.18185 1.19937 1.19694 1.22196 0.81360 0.98120 1.00118 0.92575 0.91300 0.91570 0.93462 0.93067 0.86124 0.86668 0.88340 0.89430 0.86231 0.90105 0.89007 0.95002 0.90466 0.75058 0.87228 0.87851 0.91956 0.93475 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.11 -1.61 5.22 30.59 0.16 -1.45 16 3 C -0.12 -1.36 4.89 29.85 0.15 -1.22 16 4 C 0.51 10.61 7.85 87.66 0.69 11.29 16 5 O -0.60 -19.00 16.24 -3.03 -0.05 -19.04 16 6 N -0.62 -10.17 3.33 -811.78 -2.70 -12.87 16 7 C 0.10 0.63 6.49 86.73 0.56 1.19 16 8 C -0.12 -0.76 5.56 31.79 0.18 -0.59 16 9 C -0.09 -1.15 2.63 -9.40 -0.02 -1.17 16 10 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 11 C 0.15 3.00 2.08 44.99 0.09 3.09 16 12 H 0.07 1.68 7.57 -2.39 -0.02 1.66 16 13 C -0.16 -2.62 9.23 71.98 0.66 -1.96 16 14 N -0.71 -17.55 4.83 -442.55 -2.14 -19.69 16 15 C 0.54 19.88 7.81 87.66 0.68 20.57 16 16 O -0.56 -25.96 15.52 -3.03 -0.05 -26.01 16 17 C -0.13 -5.40 6.16 71.24 0.44 -4.96 16 18 S -0.15 -8.41 20.57 -56.49 -1.16 -9.58 16 19 C -0.55 -31.96 9.50 67.95 0.65 -31.32 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.75 5.49 84.86 0.47 1.21 16 22 N -0.91 -56.73 13.22 21.65 0.29 -56.44 16 23 Si 1.00 44.56 29.55 68.60 2.03 46.59 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 C 0.11 2.08 6.14 86.86 0.53 2.61 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 32 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 33 H 0.12 0.65 8.14 -2.39 -0.02 0.64 16 34 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.09 0.35 8.14 -2.39 -0.02 0.34 16 37 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.08 0.63 8.04 -2.39 -0.02 0.61 16 39 H 0.09 1.06 7.60 -2.39 -0.02 1.04 16 40 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.41 7.73 8.60 -92.70 -0.80 6.93 16 43 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 44 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 45 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 46 H 0.05 1.16 8.03 -2.39 -0.02 1.14 16 47 H 0.06 1.41 8.04 -2.39 -0.02 1.39 16 Total: -1.00 -87.15 399.60 2.31 -84.84 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.14 Total: 15.41 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 5.95 Total: -3.20 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -4.55 Total: -89.00 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -0.10 Total: -45.05 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.58 kcal Total: -87.15 2.31 -84.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049784962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.886 kcal (2) G-P(sol) polarization free energy of solvation -87.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds