Wall clock time and date at job start Tue Mar 31 2020 15:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46975 * 2 1 4 4 C 1.50696 * 109.47006 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00241 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00110 * 179.97438 * 4 3 2 7 7 C 1.47026 * 125.64849 * 0.02855 * 6 4 3 8 8 C 1.54318 * 107.27476 * 181.03793 * 7 6 4 9 9 C 1.55157 * 102.94125 * 22.19208 * 8 7 6 10 10 H 1.08998 * 111.00693 * 82.57214 * 9 8 7 11 11 C 1.53005 * 111.00454 * 206.39143 * 9 8 7 12 12 H 1.08996 * 109.47141 * 56.03273 * 11 9 8 13 13 C 1.53002 * 109.46655 * 296.03659 * 11 9 8 14 14 N 1.46498 * 109.47142 * 176.03688 * 11 9 8 15 15 C 1.34779 * 120.00031 * 204.99632 * 14 11 9 16 16 O 1.21284 * 119.99950 * 359.97438 * 15 14 11 17 17 C 1.50702 * 120.00073 * 180.02562 * 15 14 11 18 18 S 1.80993 * 109.46918 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00055 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99868 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00568 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99655 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00454 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47264 * 90.00005 * 23 21 19 25 25 H 1.48503 * 109.47423 * 210.00222 * 23 21 19 26 26 H 1.48506 * 109.47185 * 330.00064 * 23 21 19 27 27 C 1.47425 * 125.65360 * 180.02562 * 6 4 3 28 28 H 1.08997 * 109.47587 * 299.99871 * 1 2 3 29 29 H 1.09005 * 109.47543 * 59.99940 * 1 2 3 30 30 H 1.09003 * 109.47423 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46731 * 240.00426 * 2 1 3 32 32 H 1.09000 * 109.47267 * 119.99696 * 2 1 3 33 33 H 1.09005 * 109.46710 * 59.99979 * 3 2 1 34 34 H 1.09000 * 109.46875 * 299.99936 * 3 2 1 35 35 H 1.09003 * 109.88473 * 61.61551 * 7 6 4 36 36 H 1.09002 * 109.87693 * 300.45607 * 7 6 4 37 37 H 1.08993 * 110.72418 * 140.55237 * 8 7 6 38 38 H 1.09005 * 110.71816 * 263.82952 * 8 7 6 39 39 H 1.09000 * 109.46854 * 185.08264 * 13 11 9 40 40 H 1.09003 * 109.46939 * 305.07529 * 13 11 9 41 41 H 1.08997 * 109.47191 * 65.07928 * 13 11 9 42 42 H 0.96998 * 120.00098 * 25.00082 * 14 11 9 43 43 H 1.08999 * 109.46591 * 299.99778 * 17 15 14 44 44 H 1.08996 * 109.47416 * 59.99885 * 17 15 14 45 45 H 0.96991 * 120.00112 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.36278 * 37.05129 * 27 6 4 47 47 H 1.09000 * 110.45950 * 274.78118 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0002 7 6 3.6146 3.9492 -0.0002 8 6 4.7679 4.9742 -0.0273 9 6 5.9481 4.1539 -0.6116 10 1 5.8989 4.1192 -1.6999 11 6 7.2918 4.7167 -0.1439 12 1 7.3156 4.7423 0.9455 13 6 7.4693 6.1343 -0.6914 14 7 8.3765 3.8637 -0.6361 15 6 9.5554 3.8291 0.0161 16 8 9.7186 4.5044 1.0102 17 6 10.6714 2.9522 -0.4906 18 16 12.1124 3.1244 0.5909 19 6 13.2302 2.0236 -0.2112 20 1 12.9211 1.4925 -1.0993 21 6 14.5081 1.8389 0.2984 22 7 14.8847 2.4858 1.3812 23 14 15.6928 0.6714 -0.5515 24 1 16.4757 1.4156 -1.5706 25 1 16.6173 0.0864 0.4528 26 1 14.9274 -0.4162 -1.2123 27 6 5.6879 2.7550 0.0002 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.0178 4.0864 0.9015 36 1 2.9884 4.0723 -0.8839 37 1 4.5226 5.8137 -0.6776 38 1 5.0000 5.3202 0.9800 39 1 8.4630 6.5013 -0.4345 40 1 7.3556 6.1220 -1.7754 41 1 6.7157 6.7895 -0.2544 42 1 8.2462 3.3240 -1.4315 43 1 10.3428 1.9129 -0.4960 44 1 10.9394 3.2538 -1.5032 45 1 15.7775 2.3566 1.7375 46 1 6.1457 1.9805 -0.6152 47 1 6.0754 2.7082 1.0179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049784963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:34 Heat of formation + Delta-G solvation = -94.015691 kcal Electronic energy + Delta-G solvation = -25339.188639 eV Core-core repulsion = 21647.295471 eV Total energy + Delta-G solvation = -3691.893168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.58801 -39.39879 -38.00944 -35.29167 -34.72787 -32.41974 -32.34306 -30.41305 -29.61061 -28.45220 -27.87879 -25.47158 -24.10128 -23.07674 -21.89580 -20.66309 -20.30071 -19.41266 -17.86265 -17.41704 -16.98929 -16.37412 -16.12414 -15.72499 -15.18917 -14.95739 -14.78771 -14.53871 -14.10331 -13.98706 -13.82794 -13.59128 -13.28052 -13.05877 -12.94615 -12.83038 -12.59468 -12.33133 -12.28705 -12.10360 -11.97213 -11.77051 -11.54793 -11.42956 -11.23836 -11.11366 -11.04910 -11.00985 -10.93139 -10.73757 -10.08469 -9.79945 -9.38477 -9.05674 -8.97786 -8.92539 -8.22380 -6.48309 -6.20246 -3.90532 2.36316 2.62553 3.01614 3.09497 3.23751 3.28884 3.33057 3.66872 4.01979 4.09207 4.22068 4.33909 4.42738 4.49807 4.59742 4.73403 4.89085 4.92795 5.00193 5.08414 5.14800 5.15265 5.17006 5.20416 5.22936 5.28197 5.34377 5.40993 5.53626 5.55170 5.59668 5.66333 5.67263 5.74527 5.77294 5.90574 5.90712 5.98563 5.99881 6.15426 6.17554 6.64003 7.18357 7.61341 7.69964 7.88498 8.36927 8.61355 9.25239 10.87205 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015859 B = 0.002229 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.144749 B =12559.997922 C =13956.776177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.524 3.476 5 O -0.537 6.537 6 N -0.623 5.623 7 C 0.101 3.899 8 C -0.123 4.123 9 C -0.108 4.108 10 H 0.091 0.909 11 C 0.155 3.845 12 H 0.091 0.909 13 C -0.162 4.162 14 N -0.736 5.736 15 C 0.535 3.465 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.110 3.890 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.397 0.603 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.080 0.920 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.932 4.324 -6.252 30.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.175 4.175 4 C 0.313 3.687 5 O -0.413 6.413 6 N -0.358 5.358 7 C -0.022 4.022 8 C -0.161 4.161 9 C -0.128 4.128 10 H 0.109 0.891 11 C 0.050 3.950 12 H 0.109 0.891 13 C -0.221 4.221 14 N -0.390 5.390 15 C 0.321 3.679 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.012 4.012 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -29.239 4.832 -4.437 29.966 hybrid contribution 0.530 -1.646 -2.110 2.728 sum -28.709 3.187 -6.547 29.618 Atomic orbital electron populations 1.21789 0.95391 1.02061 1.01720 1.21305 0.95304 0.94609 1.03719 1.21701 0.91332 1.00223 1.04199 1.20496 0.90169 0.82112 0.75879 1.90743 1.70491 1.30505 1.49577 1.48569 1.07518 1.05785 1.73894 1.22067 0.96472 0.81865 1.01841 1.22673 0.93347 0.97334 1.02773 1.22675 0.94461 0.94580 1.01082 0.89108 1.20794 0.84089 0.89956 1.00173 0.89102 1.22181 1.03106 0.95801 1.00974 1.46094 1.13475 1.47758 1.31715 1.20294 0.82517 0.81949 0.83140 1.90698 1.80874 1.42531 1.25011 1.23542 0.99968 1.01431 1.05575 1.85366 1.03098 1.59588 1.35291 1.22871 1.00200 1.29948 1.15313 0.90934 1.24993 0.97361 0.96241 0.95015 1.70016 1.19584 1.40273 1.20439 0.86168 0.80044 0.80289 0.79004 1.20288 1.20754 1.19684 1.22270 0.80203 0.96972 1.01755 0.92680 0.92717 0.92317 0.91189 0.91146 0.89009 0.89037 0.91129 0.91214 0.89364 0.89781 0.91437 0.92556 0.91764 0.76886 0.89206 0.89247 0.92203 0.90127 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.11 -0.82 5.22 -26.73 -0.14 -0.96 16 3 C -0.13 -0.89 4.89 -27.88 -0.14 -1.03 16 4 C 0.52 5.58 7.85 -10.99 -0.09 5.49 16 5 O -0.54 -8.14 16.24 5.56 0.09 -8.05 16 6 N -0.62 -5.59 3.33 -170.53 -0.57 -6.16 16 7 C 0.10 0.54 6.49 -3.06 -0.02 0.52 16 8 C -0.12 -0.64 5.56 -24.90 -0.14 -0.78 16 9 C -0.11 -0.81 2.63 -88.48 -0.23 -1.04 16 10 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 11 C 0.16 1.61 2.08 -67.93 -0.14 1.47 16 12 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 13 C -0.16 -1.54 9.23 37.16 0.34 -1.20 16 14 N -0.74 -9.30 4.83 -53.80 -0.26 -9.56 16 15 C 0.53 9.72 7.81 -10.98 -0.09 9.64 16 16 O -0.52 -11.42 15.53 5.55 0.09 -11.33 16 17 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 23 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.11 1.10 6.14 -2.54 -0.02 1.09 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.48 7.60 -51.93 -0.39 0.08 16 42 H 0.40 4.04 8.60 -40.82 -0.35 3.68 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 47 H 0.07 0.84 8.03 -51.93 -0.42 0.43 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -36.83 399.61 -9.27 -46.10 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -8.27 Total: -0.97 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 0.13 Total: -3.23 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.09 Total: -41.34 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.18 Total: -19.38 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.83 -9.27 -46.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049784963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.914 kcal (2) G-P(sol) polarization free energy of solvation -36.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds