Wall clock time and date at job start Tue Mar 31 2020 15:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46975 * 2 1 4 4 C 1.50696 * 109.47006 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00241 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00110 * 179.97438 * 4 3 2 7 7 C 1.47026 * 125.64849 * 0.02855 * 6 4 3 8 8 C 1.54318 * 107.27476 * 181.03793 * 7 6 4 9 9 C 1.55157 * 102.94125 * 22.19208 * 8 7 6 10 10 H 1.08998 * 111.00693 * 82.57214 * 9 8 7 11 11 C 1.53005 * 111.00454 * 206.39143 * 9 8 7 12 12 H 1.08996 * 109.47141 * 56.03273 * 11 9 8 13 13 C 1.53002 * 109.46655 * 296.03659 * 11 9 8 14 14 N 1.46498 * 109.47142 * 176.03688 * 11 9 8 15 15 C 1.34779 * 120.00031 * 204.99632 * 14 11 9 16 16 O 1.21284 * 119.99950 * 359.97438 * 15 14 11 17 17 C 1.50702 * 120.00073 * 180.02562 * 15 14 11 18 18 S 1.80993 * 109.46918 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00055 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99868 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00568 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99655 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00454 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47264 * 90.00005 * 23 21 19 25 25 H 1.48503 * 109.47423 * 210.00222 * 23 21 19 26 26 H 1.48506 * 109.47185 * 330.00064 * 23 21 19 27 27 C 1.47425 * 125.65360 * 180.02562 * 6 4 3 28 28 H 1.08997 * 109.47587 * 299.99871 * 1 2 3 29 29 H 1.09005 * 109.47543 * 59.99940 * 1 2 3 30 30 H 1.09003 * 109.47423 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46731 * 240.00426 * 2 1 3 32 32 H 1.09000 * 109.47267 * 119.99696 * 2 1 3 33 33 H 1.09005 * 109.46710 * 59.99979 * 3 2 1 34 34 H 1.09000 * 109.46875 * 299.99936 * 3 2 1 35 35 H 1.09003 * 109.88473 * 61.61551 * 7 6 4 36 36 H 1.09002 * 109.87693 * 300.45607 * 7 6 4 37 37 H 1.08993 * 110.72418 * 140.55237 * 8 7 6 38 38 H 1.09005 * 110.71816 * 263.82952 * 8 7 6 39 39 H 1.09000 * 109.46854 * 185.08264 * 13 11 9 40 40 H 1.09003 * 109.46939 * 305.07529 * 13 11 9 41 41 H 1.08997 * 109.47191 * 65.07928 * 13 11 9 42 42 H 0.96998 * 120.00098 * 25.00082 * 14 11 9 43 43 H 1.08999 * 109.46591 * 299.99778 * 17 15 14 44 44 H 1.08996 * 109.47416 * 59.99885 * 17 15 14 45 45 H 0.96991 * 120.00112 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.36278 * 37.05129 * 27 6 4 47 47 H 1.09000 * 110.45950 * 274.78118 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0002 7 6 3.6146 3.9492 -0.0002 8 6 4.7679 4.9742 -0.0273 9 6 5.9481 4.1539 -0.6116 10 1 5.8989 4.1192 -1.6999 11 6 7.2918 4.7167 -0.1439 12 1 7.3156 4.7423 0.9455 13 6 7.4693 6.1343 -0.6914 14 7 8.3765 3.8637 -0.6361 15 6 9.5554 3.8291 0.0161 16 8 9.7186 4.5044 1.0102 17 6 10.6714 2.9522 -0.4906 18 16 12.1124 3.1244 0.5909 19 6 13.2302 2.0236 -0.2112 20 1 12.9211 1.4925 -1.0993 21 6 14.5081 1.8389 0.2984 22 7 14.8847 2.4858 1.3812 23 14 15.6928 0.6714 -0.5515 24 1 16.4757 1.4156 -1.5706 25 1 16.6173 0.0864 0.4528 26 1 14.9274 -0.4162 -1.2123 27 6 5.6879 2.7550 0.0002 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.0178 4.0864 0.9015 36 1 2.9884 4.0723 -0.8839 37 1 4.5226 5.8137 -0.6776 38 1 5.0000 5.3202 0.9800 39 1 8.4630 6.5013 -0.4345 40 1 7.3556 6.1220 -1.7754 41 1 6.7157 6.7895 -0.2544 42 1 8.2462 3.3240 -1.4315 43 1 10.3428 1.9129 -0.4960 44 1 10.9394 3.2538 -1.5032 45 1 15.7775 2.3566 1.7375 46 1 6.1457 1.9805 -0.6152 47 1 6.0754 2.7082 1.0179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049784963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:32 Heat of formation + Delta-G solvation = -119.674307 kcal Electronic energy + Delta-G solvation = -25340.301281 eV Core-core repulsion = 21647.295471 eV Total energy + Delta-G solvation = -3693.005809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39308 -40.62607 -38.92333 -36.35282 -35.31516 -34.60329 -33.40687 -31.42552 -30.23240 -29.75820 -28.44333 -27.67488 -24.82006 -23.83331 -22.45332 -21.63868 -21.42481 -20.13665 -19.78129 -18.20521 -17.90918 -17.72296 -16.96534 -16.89489 -16.65465 -16.38009 -15.99748 -15.72080 -15.28742 -14.87355 -14.65864 -14.50621 -14.38152 -14.25834 -14.02206 -13.69750 -13.42194 -13.36563 -13.18400 -12.90927 -12.89405 -12.88054 -12.68706 -12.66423 -12.54219 -12.14420 -12.04492 -11.89736 -11.74809 -11.66090 -11.57184 -11.15940 -10.95031 -10.89323 -10.30142 -10.12578 -9.70389 -8.68162 -8.36537 -6.14411 1.25405 1.40637 1.45087 1.56071 1.58882 1.61491 1.95163 2.23992 2.28257 2.97382 3.28412 3.38477 3.49039 3.68469 3.80707 3.96927 3.99282 4.08564 4.21887 4.27660 4.31034 4.34953 4.39583 4.48720 4.50311 4.52445 4.67341 4.68403 4.73088 4.80726 4.83960 4.87866 4.91893 5.03006 5.10704 5.21403 5.23022 5.26257 5.31841 5.37704 5.39940 5.45787 5.54361 6.17980 6.49090 6.49824 7.04703 7.12052 7.24660 8.72711 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015859 B = 0.002229 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.144749 B =12559.997922 C =13956.776177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.124 4.124 4 C 0.513 3.487 5 O -0.597 6.597 6 N -0.621 5.621 7 C 0.095 3.905 8 C -0.117 4.117 9 C -0.092 4.092 10 H 0.112 0.888 11 C 0.153 3.847 12 H 0.066 0.934 13 C -0.156 4.156 14 N -0.712 5.712 15 C 0.537 3.463 16 O -0.563 6.563 17 C -0.132 4.132 18 S -0.148 6.148 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.260 1.260 27 C 0.105 3.895 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.413 0.587 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.271 0.729 46 H 0.059 0.941 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.692 5.193 -8.640 34.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.163 4.163 4 C 0.304 3.696 5 O -0.478 6.478 6 N -0.355 5.355 7 C -0.026 4.026 8 C -0.155 4.155 9 C -0.111 4.111 10 H 0.130 0.870 11 C 0.049 3.951 12 H 0.084 0.916 13 C -0.214 4.214 14 N -0.366 5.366 15 C 0.323 3.677 16 O -0.441 6.441 17 C -0.284 4.284 18 S 0.079 5.921 19 C -0.696 4.696 20 H 0.099 0.901 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.184 1.184 27 C -0.018 4.018 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.249 0.751 43 H 0.121 0.879 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -32.067 5.740 -6.864 33.292 hybrid contribution 1.270 -1.884 -1.367 2.651 sum -30.797 3.857 -8.231 32.111 Atomic orbital electron populations 1.21744 0.93274 1.02375 1.02923 1.21287 0.97032 0.95056 1.01739 1.21734 0.88013 1.00002 1.06583 1.21329 0.91855 0.81619 0.74795 1.90712 1.71892 1.32733 1.52460 1.48700 1.07043 1.07088 1.72652 1.22387 0.96714 0.79380 1.04106 1.22748 0.91760 0.97830 1.03183 1.22558 0.93449 0.93095 1.02031 0.87008 1.20986 0.84545 0.90593 0.98999 0.91555 1.22127 1.01921 0.94906 1.02418 1.45900 1.12158 1.47306 1.31232 1.19963 0.83558 0.81331 0.82884 1.90684 1.81853 1.44452 1.27104 1.23397 0.97482 1.02922 1.04569 1.85510 1.07357 1.60303 1.38944 1.23204 1.00760 1.30049 1.15562 0.90097 1.26131 0.99377 0.98015 0.95650 1.70178 1.20253 1.42027 1.22205 0.84954 0.77275 0.77866 0.77888 1.19102 1.20213 1.18428 1.22184 0.81367 0.98120 1.00129 0.91570 0.91300 0.92574 0.93067 0.93460 0.86663 0.86121 0.89426 0.88340 0.86230 0.90102 0.95002 0.90466 0.89005 0.75061 0.87859 0.87220 0.91958 0.92208 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.11 -1.61 5.22 30.60 0.16 -1.45 16 3 C -0.12 -1.36 4.89 29.85 0.15 -1.21 16 4 C 0.51 10.61 7.85 87.66 0.69 11.30 16 5 O -0.60 -19.00 16.24 -3.04 -0.05 -19.05 16 6 N -0.62 -10.18 3.33 -811.84 -2.70 -12.88 16 7 C 0.10 0.63 6.49 86.73 0.56 1.19 16 8 C -0.12 -0.76 5.56 31.78 0.18 -0.59 16 9 C -0.09 -1.15 2.63 -9.41 -0.02 -1.17 16 10 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 11 C 0.15 3.00 2.08 44.99 0.09 3.09 16 12 H 0.07 1.68 7.58 -2.39 -0.02 1.66 16 13 C -0.16 -2.62 9.23 71.98 0.66 -1.96 16 14 N -0.71 -17.55 4.83 -442.52 -2.14 -19.69 16 15 C 0.54 19.88 7.81 87.66 0.68 20.57 16 16 O -0.56 -25.96 15.53 -3.04 -0.05 -26.01 16 17 C -0.13 -5.40 6.16 71.24 0.44 -4.96 16 18 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 19 C -0.55 -32.00 9.50 67.96 0.65 -31.35 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.71 13.22 21.65 0.29 -56.43 16 23 Si 1.00 44.53 29.55 68.60 2.03 46.56 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 27 C 0.11 2.08 6.14 86.85 0.53 2.61 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 32 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 33 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.08 0.63 8.04 -2.38 -0.02 0.61 16 39 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.06 7.60 -2.39 -0.02 1.04 16 42 H 0.41 7.73 8.60 -92.71 -0.80 6.93 16 43 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 44 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 45 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 46 H 0.06 1.41 8.04 -2.39 -0.02 1.39 16 47 H 0.05 1.15 8.03 -2.39 -0.02 1.13 16 Total: -1.00 -87.10 399.61 2.31 -84.79 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.14 Total: 15.49 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.95 Total: -3.22 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -4.55 Total: -89.00 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -0.10 Total: -45.06 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -87.10 2.31 -84.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049784963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.881 kcal (2) G-P(sol) polarization free energy of solvation -87.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds