Wall clock time and date at job start Tue Mar 31 2020 15:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47269 * 2 1 4 4 C 1.50706 * 109.47079 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99670 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99952 * 179.97438 * 4 3 2 7 7 C 1.47016 * 125.64880 * 359.97438 * 6 4 3 8 8 C 1.54326 * 107.26978 * 181.10246 * 7 6 4 9 9 C 1.55159 * 102.94205 * 22.19335 * 8 7 6 10 10 H 1.08998 * 111.00344 * 82.60944 * 9 8 7 11 11 C 1.53000 * 111.00121 * 206.42566 * 9 8 7 12 12 H 1.09001 * 109.47643 * 58.54681 * 11 9 8 13 13 C 1.53002 * 109.46984 * 178.54798 * 11 9 8 14 14 N 1.46504 * 109.46987 * 298.54206 * 11 9 8 15 15 C 1.34775 * 119.99561 * 155.00053 * 14 11 9 16 16 O 1.21282 * 120.00577 * 0.02562 * 15 14 11 17 17 C 1.50703 * 119.99768 * 179.97438 * 15 14 11 18 18 S 1.81002 * 109.47349 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99849 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46819 * 59.99977 * 23 21 19 25 25 H 1.48494 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47086 * 300.00273 * 23 21 19 27 27 C 1.47424 * 125.64548 * 180.02562 * 6 4 3 28 28 H 1.09010 * 109.46963 * 300.00337 * 1 2 3 29 29 H 1.08997 * 109.47082 * 59.99493 * 1 2 3 30 30 H 1.08993 * 109.47740 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46710 * 240.00189 * 2 1 3 32 32 H 1.08997 * 109.47082 * 120.00507 * 2 1 3 33 33 H 1.09001 * 109.47560 * 60.00162 * 3 2 1 34 34 H 1.08998 * 109.47463 * 299.99707 * 3 2 1 35 35 H 1.09000 * 109.88714 * 61.68796 * 7 6 4 36 36 H 1.09006 * 109.88481 * 300.51811 * 7 6 4 37 37 H 1.09000 * 110.71761 * 263.82930 * 8 7 6 38 38 H 1.08999 * 110.71954 * 140.55796 * 8 7 6 39 39 H 1.09004 * 109.46952 * 299.99957 * 13 11 9 40 40 H 1.08994 * 109.47180 * 59.99863 * 13 11 9 41 41 H 1.08999 * 109.46967 * 179.97438 * 13 11 9 42 42 H 0.96993 * 120.00065 * 335.00312 * 14 11 9 43 43 H 1.09005 * 109.46867 * 60.00428 * 17 15 14 44 44 H 1.09000 * 109.47235 * 300.00468 * 17 15 14 45 45 H 0.97005 * 119.99878 * 179.97438 * 22 21 19 46 46 H 1.09006 * 110.36917 * 36.98922 * 27 6 4 47 47 H 1.09003 * 110.36998 * 274.66579 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2210 2.6096 0.0002 7 6 3.6148 3.9489 -0.0014 8 6 4.7683 4.9738 -0.0296 9 6 5.9484 4.1528 -0.6135 10 1 5.8992 4.1178 -1.7018 11 6 7.2921 4.7155 -0.1459 12 1 7.3333 4.7001 0.9433 13 6 8.4277 3.8601 -0.7113 14 7 7.4362 6.0939 -0.6207 15 6 8.2383 6.9533 0.0385 16 8 8.8412 6.5854 1.0245 17 6 8.3870 8.3711 -0.4502 18 16 9.5226 9.2681 0.6370 19 6 9.5106 10.8475 -0.1442 20 1 8.9096 11.0088 -1.0269 21 6 10.2728 11.8846 0.3756 22 7 11.0049 11.6881 1.4517 23 14 10.2606 13.5587 -0.4529 24 1 8.8770 14.0982 -0.4586 25 1 11.1498 14.4860 0.2917 26 1 10.7448 13.4230 -1.8503 27 6 5.6881 2.7546 0.0002 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.0183 4.0871 0.9004 36 1 2.9884 4.0714 -0.8850 37 1 5.0007 5.3207 0.9772 38 1 4.5228 5.8128 -0.6807 39 1 8.3205 2.8345 -0.3581 40 1 8.3865 3.8755 -1.8003 41 1 9.3850 4.2612 -0.3785 42 1 6.9543 6.3881 -1.4094 43 1 7.4135 8.8616 -0.4436 44 1 8.7843 8.3658 -1.4652 45 1 11.5378 12.4128 1.8147 46 1 6.1459 1.9794 -0.6143 47 1 6.0738 2.7095 1.0187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049784968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:42 Heat of formation + Delta-G solvation = -118.720832 kcal Electronic energy + Delta-G solvation = -25174.246587 eV Core-core repulsion = 21481.282124 eV Total energy + Delta-G solvation = -3692.964463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38466 -40.61037 -38.90557 -36.34785 -35.30424 -34.56652 -33.27341 -31.67000 -30.41853 -29.43834 -28.29320 -27.63796 -25.30346 -23.35700 -22.55269 -21.62208 -21.43428 -20.14726 -19.78389 -18.18569 -17.92288 -17.73794 -16.93511 -16.85898 -16.54432 -16.36214 -15.97484 -15.69783 -15.10493 -14.87539 -14.72360 -14.45630 -14.35740 -14.16791 -14.08493 -13.75686 -13.58467 -13.37522 -13.17086 -13.14443 -12.87336 -12.85192 -12.65995 -12.62730 -12.41459 -12.11689 -12.03843 -11.82915 -11.73460 -11.65552 -11.58783 -11.11205 -10.95936 -10.86272 -10.24633 -10.10705 -9.69976 -8.64335 -8.32833 -6.10628 1.28691 1.44996 1.48475 1.57407 1.59879 1.66400 1.93306 2.27803 2.32701 3.01365 3.30371 3.39481 3.49099 3.69817 3.81042 3.99655 4.02352 4.09245 4.21674 4.24677 4.28515 4.35772 4.38335 4.46849 4.53954 4.54995 4.67567 4.68558 4.74424 4.75129 4.82645 4.87851 4.92386 5.01446 5.06798 5.20909 5.23085 5.23360 5.27191 5.36152 5.43335 5.46486 5.53553 6.21206 6.48594 6.56930 7.08538 7.11731 7.31017 8.75960 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030609 B = 0.001869 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.549412 B =14977.641789 C =15526.326181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.128 4.128 4 C 0.517 3.483 5 O -0.592 6.592 6 N -0.621 5.621 7 C 0.099 3.901 8 C -0.126 4.126 9 C -0.092 4.092 10 H 0.113 0.887 11 C 0.158 3.842 12 H 0.067 0.933 13 C -0.163 4.163 14 N -0.704 5.704 15 C 0.537 3.463 16 O -0.566 6.566 17 C -0.129 4.129 18 S -0.154 6.154 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.997 3.003 24 H -0.261 1.261 25 H -0.281 1.281 26 H -0.262 1.262 27 C 0.111 3.889 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.417 0.583 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.270 0.730 46 H 0.072 0.928 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.159 -17.608 -8.932 30.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.167 4.167 4 C 0.309 3.691 5 O -0.473 6.473 6 N -0.354 5.354 7 C -0.023 4.023 8 C -0.164 4.164 9 C -0.112 4.112 10 H 0.131 0.869 11 C 0.053 3.947 12 H 0.085 0.915 13 C -0.222 4.222 14 N -0.358 5.358 15 C 0.323 3.677 16 O -0.445 6.445 17 C -0.280 4.280 18 S 0.073 5.927 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.187 1.187 27 C -0.012 4.012 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.254 0.746 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.802 -18.783 -7.174 29.658 hybrid contribution -0.057 1.379 -1.322 1.911 sum -21.859 -17.404 -8.496 29.205 Atomic orbital electron populations 1.21753 0.93556 1.02376 1.02788 1.21268 0.96813 0.94886 1.01917 1.21745 0.88419 1.00123 1.06398 1.21194 0.91646 0.81542 0.74761 1.90693 1.71768 1.32389 1.52441 1.48670 1.07246 1.06810 1.72711 1.22294 0.96468 0.79644 1.03871 1.22744 0.93095 0.97973 1.02562 1.22498 0.92913 0.93654 1.02097 0.86926 1.20794 0.94414 0.80463 0.99035 0.91506 1.22192 0.97754 0.99998 1.02215 1.45706 1.47541 1.10697 1.31823 1.20024 0.78410 0.86641 0.82656 1.90702 1.47116 1.78773 1.27860 1.23375 1.05044 0.95233 1.04365 1.85613 1.58467 1.09055 1.39579 1.23186 1.33297 0.96741 1.16216 0.89798 1.26117 0.93871 1.03631 0.95505 1.70183 1.27739 1.34527 1.22367 0.85021 0.78771 0.76008 0.78306 1.18551 1.20578 1.18702 1.22139 0.81255 0.97070 1.00761 0.91764 0.91496 0.92440 0.92834 0.93169 0.86952 0.86423 0.89827 0.88486 0.91408 0.87362 0.90600 0.90634 0.94602 0.74556 0.86919 0.87332 0.92066 0.90915 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 71.98 0.71 -0.42 16 2 C -0.11 -1.41 5.22 30.59 0.16 -1.25 16 3 C -0.13 -1.29 4.89 29.85 0.15 -1.15 16 4 C 0.52 9.61 7.85 87.66 0.69 10.30 16 5 O -0.59 -16.66 16.24 -3.03 -0.05 -16.71 16 6 N -0.62 -9.31 3.33 -811.78 -2.70 -12.01 16 7 C 0.10 0.80 6.49 86.73 0.56 1.36 16 8 C -0.13 -1.25 6.13 31.78 0.19 -1.06 16 9 C -0.09 -1.15 2.62 -9.40 -0.02 -1.18 16 10 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 11 C 0.16 3.10 2.09 44.99 0.09 3.19 16 12 H 0.07 1.70 7.54 -2.39 -0.02 1.68 16 13 C -0.16 -3.29 9.33 71.98 0.67 -2.62 16 14 N -0.70 -15.11 4.77 -442.52 -2.11 -17.23 16 15 C 0.54 18.35 7.81 87.66 0.68 19.03 16 16 O -0.57 -25.24 15.53 -3.04 -0.05 -25.29 16 17 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16 18 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 19 C -0.55 -30.59 9.50 67.96 0.65 -29.94 16 20 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -55.56 13.22 21.65 0.29 -55.27 16 23 Si 1.00 42.81 29.55 68.60 2.03 44.84 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 27 C 0.11 1.84 5.56 86.85 0.48 2.32 16 28 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.83 8.10 -2.39 -0.02 0.82 16 32 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 33 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 37 H 0.07 0.94 8.04 -2.39 -0.02 0.92 16 38 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 1.35 7.45 -2.39 -0.02 1.33 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.42 5.79 8.60 -92.71 -0.80 5.00 16 43 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 44 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 45 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 46 H 0.07 1.35 7.96 -2.38 -0.02 1.33 16 47 H 0.06 1.14 8.00 -2.39 -0.02 1.12 16 Total: -1.00 -82.72 399.35 2.31 -80.41 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.15 Total: 15.34 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 5.92 Total: -4.54 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -4.53 Total: -84.51 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.10 Total: -41.99 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -82.72 2.31 -80.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049784968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.312 kcal (2) G-P(sol) polarization free energy of solvation -82.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds