Wall clock time and date at job start Tue Mar 31 2020 15:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47218 * 2 1 4 4 C 1.50703 * 109.47197 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99952 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00081 * 179.97438 * 4 3 2 7 7 C 1.46501 * 120.00286 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46824 * 35.00000 * 7 6 4 9 9 C 1.52998 * 109.47055 * 275.00233 * 7 6 4 10 10 C 1.52999 * 109.46871 * 154.99785 * 7 6 4 11 11 H 1.09001 * 110.91426 * 62.45493 * 10 7 6 12 12 C 1.55282 * 111.09626 * 186.35885 * 10 7 6 13 13 C 1.54322 * 103.00430 * 153.45081 * 12 10 7 14 14 N 1.47023 * 107.27149 * 337.88615 * 13 12 10 15 15 C 1.34780 * 125.64409 * 178.95789 * 14 13 12 16 16 O 1.21286 * 119.99503 * 179.97438 * 15 14 13 17 17 C 1.50696 * 120.00388 * 359.97438 * 15 14 13 18 18 S 1.80999 * 109.47155 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00208 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00260 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99777 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00081 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47068 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47393 * 119.99724 * 23 21 19 26 26 H 1.48500 * 109.46940 * 239.99805 * 23 21 19 27 27 C 1.47419 * 108.70585 * 358.94325 * 14 13 12 28 28 H 1.08995 * 109.46875 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46946 * 300.00492 * 1 2 3 30 30 H 1.09001 * 109.47009 * 60.00288 * 1 2 3 31 31 H 1.09002 * 109.47701 * 239.99997 * 2 1 3 32 32 H 1.09001 * 109.47009 * 119.99712 * 2 1 3 33 33 H 1.08998 * 109.47564 * 59.99886 * 3 2 1 34 34 H 1.09001 * 109.46895 * 299.99782 * 3 2 1 35 35 H 0.97007 * 119.99996 * 0.02562 * 6 4 3 36 36 H 1.08997 * 109.47114 * 299.99589 * 9 7 6 37 37 H 1.09002 * 109.47248 * 59.99901 * 9 7 6 38 38 H 1.09003 * 109.46828 * 179.97438 * 9 7 6 39 39 H 1.09006 * 110.61769 * 35.10160 * 12 10 7 40 40 H 1.08997 * 110.91483 * 271.93842 * 12 10 7 41 41 H 1.09009 * 109.88484 * 218.47198 * 13 12 10 42 42 H 1.09003 * 110.01148 * 97.38135 * 13 12 10 43 43 H 1.08996 * 109.47261 * 300.00000 * 17 15 14 44 44 H 1.09001 * 109.46966 * 59.99896 * 17 15 14 45 45 H 0.97003 * 119.99734 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.36926 * 142.96521 * 27 14 13 47 47 H 1.08995 * 110.36556 * 265.17805 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0013 7 6 5.6860 2.6097 -0.0013 8 1 6.0492 1.7676 -0.5903 9 6 6.1960 2.4847 1.4357 10 6 6.1958 3.9168 -0.6117 11 1 5.8816 4.7733 -0.0153 12 6 7.7396 3.8916 -0.7771 13 6 7.9792 4.8658 -1.9496 14 7 6.7233 4.9519 -2.7092 15 6 6.5154 5.7172 -3.7990 16 8 5.4341 5.7091 -4.3483 17 6 7.6264 6.5828 -4.3351 18 16 7.0411 7.4817 -5.7930 19 6 8.4976 8.3856 -6.2004 20 1 9.3874 8.2759 -5.5982 21 6 8.5012 9.2394 -7.2947 22 7 7.4166 9.3735 -8.0284 23 14 10.0452 10.1983 -7.7262 24 1 11.1181 9.8732 -6.7523 25 1 10.4901 9.8306 -9.0944 26 1 9.7546 11.6536 -7.6745 27 6 5.7293 4.0624 -2.0816 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.7359 3.4498 -0.0009 36 1 5.8327 3.3268 2.0247 37 1 5.8327 1.5535 1.8705 38 1 7.2860 2.4843 1.4356 39 1 8.0820 2.8888 -1.0328 40 1 8.2336 4.2474 0.1270 41 1 8.7748 4.4859 -2.5907 42 1 8.2496 5.8502 -1.5674 43 1 7.9348 7.2941 -3.5689 44 1 8.4743 5.9560 -4.6113 45 1 7.4192 9.9699 -8.7934 46 1 4.7377 4.5132 -2.1221 47 1 5.7240 3.0910 -2.5759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050099003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:38 Heat of formation + Delta-G solvation = -94.688366 kcal Electronic energy + Delta-G solvation = -25335.180539 eV Core-core repulsion = 21643.258201 eV Total energy + Delta-G solvation = -3691.922337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.49652 -39.61342 -37.71116 -35.57971 -34.62424 -32.45117 -32.38998 -30.36214 -29.71761 -28.14707 -28.04976 -25.51263 -23.81619 -23.21182 -21.92585 -20.84359 -20.34589 -19.29783 -17.78217 -17.34616 -16.94552 -16.56996 -16.13105 -15.77034 -15.24287 -14.81956 -14.62329 -14.40645 -14.32069 -14.09653 -13.86466 -13.58123 -13.42977 -13.14083 -12.84136 -12.64185 -12.54906 -12.35657 -12.27124 -12.09682 -11.90275 -11.79167 -11.54862 -11.42142 -11.23495 -11.08598 -11.08340 -11.02852 -10.96359 -10.76745 -10.06440 -9.82225 -9.46103 -9.38742 -9.08834 -8.53827 -8.24755 -6.51965 -6.23223 -3.93942 2.37907 2.81597 2.88385 3.03333 3.20415 3.24960 3.30053 3.59319 4.10363 4.18762 4.24478 4.38914 4.42710 4.54668 4.64764 4.87256 4.87780 4.94254 5.04885 5.09121 5.12043 5.13540 5.14993 5.21443 5.27134 5.34964 5.39092 5.45021 5.51063 5.58861 5.61767 5.69545 5.70560 5.75483 5.80147 5.81029 5.91535 5.94894 5.97472 6.12167 6.18260 6.38280 7.18105 7.58331 7.63759 7.94535 8.33999 8.52615 9.22190 10.84287 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021642 B = 0.002105 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.489670 B =13296.260401 C =14390.378124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.514 3.486 5 O -0.541 6.541 6 N -0.729 5.729 7 C 0.154 3.846 8 H 0.092 0.908 9 C -0.161 4.161 10 C -0.112 4.112 11 H 0.092 0.908 12 C -0.120 4.120 13 C 0.101 3.899 14 N -0.627 5.627 15 C 0.548 3.452 16 O -0.516 6.516 17 C -0.147 4.147 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.116 3.884 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.401 0.599 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.076 0.924 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.925 -14.950 22.106 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.183 4.183 4 C 0.301 3.699 5 O -0.418 6.418 6 N -0.381 5.381 7 C 0.049 3.951 8 H 0.110 0.890 9 C -0.220 4.220 10 C -0.131 4.131 11 H 0.110 0.890 12 C -0.159 4.159 13 C -0.022 4.022 14 N -0.365 5.365 15 C 0.337 3.663 16 O -0.390 6.390 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 C -0.007 4.007 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.236 0.764 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.185 -15.580 21.039 27.147 hybrid contribution 2.092 1.168 0.360 2.422 sum -5.093 -14.412 21.398 26.297 Atomic orbital electron populations 1.21798 0.95442 1.02003 1.01864 1.21274 0.95314 0.94615 1.03510 1.21750 0.91643 1.00346 1.04559 1.20787 0.90396 0.83500 0.75217 1.90703 1.70552 1.31300 1.49241 1.46148 1.07119 1.08918 1.75882 1.20889 0.79669 0.97539 0.97017 0.89033 1.22163 1.01622 1.02372 0.95818 1.22709 0.96449 0.97826 0.96162 0.89008 1.22672 0.94517 1.00343 0.98351 1.22005 0.87328 0.99897 0.92972 1.48496 1.13501 1.45080 1.29391 1.20040 0.89362 0.78768 0.78133 1.90709 1.26184 1.65012 1.57100 1.23505 0.99699 1.01309 1.05192 1.85401 1.19430 1.51860 1.26800 1.22898 0.98831 1.29826 1.16707 0.90870 1.24999 0.97234 0.96239 0.95156 1.70030 1.27265 1.36077 1.16886 0.86108 0.81630 0.79304 0.78403 1.19614 1.20545 1.20558 1.22110 0.93441 0.94327 0.90851 0.92404 0.92728 0.92532 0.91189 0.91367 0.88934 0.88665 0.76429 0.92357 0.92011 0.91293 0.90131 0.89561 0.91120 0.91129 0.89299 0.89296 0.92224 0.90525 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.11 -0.78 5.22 -26.73 -0.14 -0.92 16 3 C -0.14 -0.90 5.70 -27.88 -0.16 -1.06 16 4 C 0.51 4.65 7.79 -10.98 -0.09 4.56 16 5 O -0.54 -6.99 15.64 5.56 0.09 -6.91 16 6 N -0.73 -5.24 4.77 -53.81 -0.26 -5.50 16 7 C 0.15 1.16 2.09 -67.93 -0.14 1.02 16 8 H 0.09 0.87 7.55 -51.93 -0.39 0.48 16 9 C -0.16 -1.06 9.33 37.16 0.35 -0.71 16 10 C -0.11 -0.85 2.63 -88.41 -0.23 -1.08 16 11 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 12 C -0.12 -0.85 5.60 -24.83 -0.14 -0.99 16 13 C 0.10 1.03 6.49 -3.06 -0.02 1.01 16 14 N -0.63 -8.87 3.33 -170.52 -0.57 -9.43 16 15 C 0.55 10.59 7.87 -10.99 -0.09 10.50 16 16 O -0.52 -11.97 16.12 5.55 0.09 -11.88 16 17 C -0.15 -3.01 5.35 36.00 0.19 -2.82 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 20 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.12 1.33 6.08 -2.53 -0.02 1.31 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.40 2.07 8.60 -40.82 -0.35 1.72 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.38 7.52 -51.93 -0.39 -0.01 16 39 H 0.08 0.54 8.01 -51.93 -0.42 0.12 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 47 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -36.45 399.50 -9.31 -45.76 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -8.27 Total: -2.47 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 0.09 Total: -2.61 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.09 Total: -40.34 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.18 Total: -18.79 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.45 -9.31 -45.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050099003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.933 kcal (2) G-P(sol) polarization free energy of solvation -36.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds