Wall clock time and date at job start Tue Mar 31 2020 15:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47218 * 2 1 4 4 C 1.50703 * 109.47197 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99952 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00081 * 179.97438 * 4 3 2 7 7 C 1.46501 * 120.00286 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46824 * 35.00000 * 7 6 4 9 9 C 1.52998 * 109.47055 * 275.00233 * 7 6 4 10 10 C 1.52999 * 109.46871 * 154.99785 * 7 6 4 11 11 H 1.09001 * 110.91426 * 62.45493 * 10 7 6 12 12 C 1.55282 * 111.09626 * 186.35885 * 10 7 6 13 13 C 1.54322 * 103.00430 * 153.45081 * 12 10 7 14 14 N 1.47023 * 107.27149 * 337.88615 * 13 12 10 15 15 C 1.34780 * 125.64409 * 178.95789 * 14 13 12 16 16 O 1.21286 * 119.99503 * 179.97438 * 15 14 13 17 17 C 1.50696 * 120.00388 * 359.97438 * 15 14 13 18 18 S 1.80999 * 109.47155 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00208 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00260 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99777 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00081 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47068 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47393 * 119.99724 * 23 21 19 26 26 H 1.48500 * 109.46940 * 239.99805 * 23 21 19 27 27 C 1.47419 * 108.70585 * 358.94325 * 14 13 12 28 28 H 1.08995 * 109.46875 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46946 * 300.00492 * 1 2 3 30 30 H 1.09001 * 109.47009 * 60.00288 * 1 2 3 31 31 H 1.09002 * 109.47701 * 239.99997 * 2 1 3 32 32 H 1.09001 * 109.47009 * 119.99712 * 2 1 3 33 33 H 1.08998 * 109.47564 * 59.99886 * 3 2 1 34 34 H 1.09001 * 109.46895 * 299.99782 * 3 2 1 35 35 H 0.97007 * 119.99996 * 0.02562 * 6 4 3 36 36 H 1.08997 * 109.47114 * 299.99589 * 9 7 6 37 37 H 1.09002 * 109.47248 * 59.99901 * 9 7 6 38 38 H 1.09003 * 109.46828 * 179.97438 * 9 7 6 39 39 H 1.09006 * 110.61769 * 35.10160 * 12 10 7 40 40 H 1.08997 * 110.91483 * 271.93842 * 12 10 7 41 41 H 1.09009 * 109.88484 * 218.47198 * 13 12 10 42 42 H 1.09003 * 110.01148 * 97.38135 * 13 12 10 43 43 H 1.08996 * 109.47261 * 300.00000 * 17 15 14 44 44 H 1.09001 * 109.46966 * 59.99896 * 17 15 14 45 45 H 0.97003 * 119.99734 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.36926 * 142.96521 * 27 14 13 47 47 H 1.08995 * 110.36556 * 265.17805 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0013 7 6 5.6860 2.6097 -0.0013 8 1 6.0492 1.7676 -0.5903 9 6 6.1960 2.4847 1.4357 10 6 6.1958 3.9168 -0.6117 11 1 5.8816 4.7733 -0.0153 12 6 7.7396 3.8916 -0.7771 13 6 7.9792 4.8658 -1.9496 14 7 6.7233 4.9519 -2.7092 15 6 6.5154 5.7172 -3.7990 16 8 5.4341 5.7091 -4.3483 17 6 7.6264 6.5828 -4.3351 18 16 7.0411 7.4817 -5.7930 19 6 8.4976 8.3856 -6.2004 20 1 9.3874 8.2759 -5.5982 21 6 8.5012 9.2394 -7.2947 22 7 7.4166 9.3735 -8.0284 23 14 10.0452 10.1983 -7.7262 24 1 11.1181 9.8732 -6.7523 25 1 10.4901 9.8306 -9.0944 26 1 9.7546 11.6536 -7.6745 27 6 5.7293 4.0624 -2.0816 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.7359 3.4498 -0.0009 36 1 5.8327 3.3268 2.0247 37 1 5.8327 1.5535 1.8705 38 1 7.2860 2.4843 1.4356 39 1 8.0820 2.8888 -1.0328 40 1 8.2336 4.2474 0.1270 41 1 8.7748 4.4859 -2.5907 42 1 8.2496 5.8502 -1.5674 43 1 7.9348 7.2941 -3.5689 44 1 8.4743 5.9560 -4.6113 45 1 7.4192 9.9699 -8.7934 46 1 4.7377 4.5132 -2.1221 47 1 5.7240 3.0910 -2.5759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050099003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:36 Heat of formation + Delta-G solvation = -119.444907 kcal Electronic energy + Delta-G solvation = -25336.254063 eV Core-core repulsion = 21643.258201 eV Total energy + Delta-G solvation = -3692.995862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.37255 -40.65029 -38.84971 -36.44222 -35.23462 -34.60008 -33.32110 -31.47028 -30.64268 -29.25040 -28.57695 -27.67258 -24.70302 -24.02734 -22.53347 -21.51992 -21.04448 -20.66832 -19.57152 -18.22418 -17.90214 -17.73623 -16.89845 -16.84721 -16.68520 -16.59553 -15.82571 -15.49373 -15.17603 -15.15089 -14.86635 -14.52052 -14.41092 -14.03015 -13.92963 -13.70073 -13.62629 -13.30101 -13.16207 -12.93756 -12.92153 -12.87094 -12.68338 -12.61769 -12.51567 -12.15806 -12.01878 -11.95150 -11.71236 -11.63515 -11.60278 -11.16978 -11.00765 -10.80428 -10.29815 -10.08099 -9.72882 -8.69679 -8.36058 -6.14869 1.22833 1.41111 1.44290 1.52985 1.56516 1.68308 2.06558 2.21982 2.25958 2.98238 3.21228 3.41359 3.49422 3.68505 3.83564 3.89267 4.02654 4.11870 4.18010 4.22310 4.29952 4.33307 4.39750 4.43496 4.51756 4.58394 4.66429 4.70799 4.77658 4.81310 4.83278 4.89224 4.90965 4.99334 5.09218 5.20592 5.23522 5.27381 5.34633 5.37579 5.40804 5.44402 5.56665 6.18783 6.35644 6.57550 7.05176 7.07973 7.29499 8.73513 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021642 B = 0.002105 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.489670 B =13296.260401 C =14390.378124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.138 4.138 4 C 0.509 3.491 5 O -0.586 6.586 6 N -0.721 5.721 7 C 0.157 3.843 8 H 0.070 0.930 9 C -0.154 4.154 10 C -0.093 4.093 11 H 0.110 0.890 12 C -0.110 4.110 13 C 0.088 3.912 14 N -0.618 5.618 15 C 0.545 3.455 16 O -0.568 6.568 17 C -0.119 4.119 18 S -0.152 6.152 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.110 3.890 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.271 0.729 46 H 0.067 0.933 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 -14.323 24.586 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.178 4.178 4 C 0.297 3.703 5 O -0.467 6.467 6 N -0.373 5.373 7 C 0.052 3.948 8 H 0.088 0.912 9 C -0.212 4.212 10 C -0.112 4.112 11 H 0.128 0.872 12 C -0.149 4.149 13 C -0.033 4.033 14 N -0.352 5.352 15 C 0.333 3.667 16 O -0.447 6.447 17 C -0.271 4.271 18 S 0.075 5.925 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.012 4.012 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.458 -14.957 23.578 28.450 hybrid contribution 1.547 0.868 -0.324 1.803 sum -3.911 -14.089 23.254 27.469 Atomic orbital electron populations 1.21766 0.93962 1.02308 1.02624 1.21244 0.96539 0.95028 1.01934 1.21783 0.89605 1.00062 1.06321 1.21291 0.91527 0.83175 0.74323 1.90683 1.71584 1.32908 1.51488 1.46125 1.07233 1.09075 1.74845 1.20833 0.79804 0.96579 0.97623 0.91220 1.22099 1.02573 1.01981 0.94584 1.22611 0.96946 0.98405 0.93251 0.87176 1.22719 0.93885 0.99999 0.98250 1.22402 0.85466 1.01727 0.93749 1.48447 1.15769 1.43286 1.27735 1.19792 0.88214 0.79386 0.79294 1.90686 1.27774 1.67011 1.59188 1.23299 1.00283 1.01297 1.02176 1.85591 1.21635 1.53702 1.31561 1.23223 0.98863 1.29984 1.17204 0.89859 1.26152 1.00992 0.97245 0.94833 1.70193 1.29926 1.37083 1.17576 0.84883 0.77053 0.77488 0.78383 1.17933 1.19974 1.19837 1.22291 0.92710 0.92978 0.93269 0.92416 0.91470 0.92183 0.93316 0.92498 0.86334 0.87469 0.75016 0.90877 0.93887 0.89734 0.89542 0.86268 0.90650 0.89780 0.87322 0.87754 0.91964 0.91473 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.11 -1.57 5.22 30.59 0.16 -1.41 16 3 C -0.14 -1.59 5.70 29.85 0.17 -1.42 16 4 C 0.51 9.00 7.79 87.66 0.68 9.68 16 5 O -0.59 -15.56 15.64 -3.03 -0.05 -15.61 16 6 N -0.72 -9.40 4.77 -442.54 -2.11 -11.51 16 7 C 0.16 2.08 2.09 44.99 0.09 2.17 16 8 H 0.07 1.28 7.55 -2.39 -0.02 1.26 16 9 C -0.15 -1.61 9.33 71.98 0.67 -0.94 16 10 C -0.09 -1.14 2.63 -9.36 -0.02 -1.17 16 11 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 12 C -0.11 -1.14 5.60 31.83 0.18 -0.96 16 13 C 0.09 1.53 6.49 86.73 0.56 2.09 16 14 N -0.62 -16.64 3.33 -811.80 -2.70 -19.34 16 15 C 0.54 21.05 7.87 87.66 0.69 21.74 16 16 O -0.57 -27.25 16.12 -3.05 -0.05 -27.30 16 17 C -0.12 -4.86 5.35 71.23 0.38 -4.47 16 18 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 19 C -0.54 -31.17 9.50 67.95 0.65 -30.52 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 23 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 C 0.11 2.41 6.08 86.85 0.53 2.94 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 32 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 33 H 0.12 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.41 3.44 8.60 -92.70 -0.80 2.64 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.63 7.52 -2.39 -0.02 0.61 16 39 H 0.09 0.86 8.01 -2.38 -0.02 0.84 16 40 H 0.12 0.57 8.14 -2.39 -0.02 0.56 16 41 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.11 3.95 8.14 -2.40 -0.02 3.94 16 44 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.07 1.61 8.04 -2.39 -0.02 1.59 16 47 H 0.05 1.34 8.03 -2.39 -0.02 1.32 16 Total: -1.00 -83.67 399.50 2.31 -81.36 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.14 Total: 14.31 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 5.92 Total: -1.91 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -4.53 Total: -86.62 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.10 Total: -42.90 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -83.67 2.31 -81.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050099003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.084 kcal (2) G-P(sol) polarization free energy of solvation -83.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds